Gene

KWMTBOMO07219

Pre Gene Modal

BGIBMGA010374

Annotation

PREDICTED:_lateral_signaling_target_protein_2_homolog_[Bombyx_mori]

Location

Bomo_Chr12(-):8453992-8456025      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 1.923

CDS

ATGTCTTCAGCTTCGGGAGCAAAAGGGGGACCTGCTGATCATTGGGTTAGAGACGACACTGCTCCTTATTGCACGCAATGTCAAGTACGTTTCACGGCGCTGGAGCGGCGGCACCACTGTCGCGAGTGCGGCGCCGTGTTCTGCGGGCGCTGCTCGCGGTACGAGGCGCCCGTGCGGCGCCTGCGCGCGCTGCGACCCGTGCGCGTCTGCCAGCGGTGCCACGACAACATACACGGGAAGAAAGAATAA

Protein

MSSASGAKGGPADHWVRDDTAPYCTQCQVRFTALERRHHCRECGAVFCGRCSRYEAPVRRLRALRPVRVCQRCHDNIHGKKE

Uniprot

A0A194PNT7   A0A212FAA3   A0A2A4K9R0   A0A2A4K9C2   H9JLH3   A0A0N0PD96   + More
A0A194R0Y0   A0A0L7K4U8   A0A2H1W8G9   A0A0P5P8Y6   A0A0P6FYD3   A0A0P5GCD6   A0A0P5EGG0   A0A0P5T7B4   A0A0P4ZNG2   A0A0P5ZHG9   A0A0N8AAG6   A0A0P4Y6L9   A0A162CEK7   A0A0P5ZFG6   A0A0P6AK04   A0A0P5Y374   A0A0P5YUA4   A0A0P5GE98   A0A0P5D9Z1   A0A0P6H601   T1IFV9   A0A023F476   A0A3S3SCH5   A0A210QSY5   D6W992   A0A0N4UMZ7   A0A0V1BR20   A0A0V1BTH1   A0A0V1BR86   A0A0V1JS03   A0A0V1EM44   A0A0V1FS81   A0A0V1EJV5   A0A0V1FSJ5   A0A0V1JA59   A0A0V1JT30   A0A0V1JS09   A0A0V1EJR9   E2BI71   A0A0V0XPE5   A0A0V0XPE1   A0A0V0XPF7   A0A0V0VFS4   A0A0V1NV94   A0A0V0VEV7   A0A0V0UE40   A0A0V0SBC4   A0A0V0WEC6   A0A0V1KYD0   A0A0V0ZIC1   A0A0V1NVE9   A0A0D8Y0F6   A0A3Q0II75   A0A1B0DKX8   A0A0A9YVE9   A0A0V1CH23   A0A0V0VEY0   A0A0V1CG95   A0A0V0UDH9   A0A0V1CGA1   A0A0V0WCE8   A0A0V0SBA5   A0A085NL72   A0A077Z0B9   A0A1Y1L5H9   A0A0V1CGX9   A0A087SUX2   E0VI72   B4JBT3   B4LR57   A0A3P9L505   H2MQV2   A0A183UN25   A0A3P9J0T7   A0A2S2NZU6   A0A2H8THQ8   B4KGE6   A0A0M4EP89   A0A250Y8L3   A0A3P8Z6K4   A0A0B2VJ60   A0A0N4TMS0   A0A1J1ITB5   A0A0V1HZ15   A0A0V1HYR0   A0A0V1HYE4   A0A0V1HZT2   A0A0V1MSQ1   A0A3S2Q372   B4I1L7  

Pubmed

26354079    22118469    19121390    26227816    25474469    28812685    + More
18362917    19820115    20798317    26856411    25401762    24929829    28004739    20566863    17994087    18057021    17554307    28087693    25069045   

EMBL

KQ459603    KPI92790.1    AGBW02009504    OWR50662.1    NWSH01000030    PCG80523.1    + More
PCG80524.1    BABH01005773    KQ460281    KPJ16301.1    KQ460883    KPJ11169.1    JTDY01011318    KOB56977.1    ODYU01007005    SOQ49360.1    GDIQ01132008    JAL19718.1    GDIQ01052337    JAN42400.1    GDIQ01244671    JAK07054.1    GDIP01148764    JAJ74638.1    GDIP01131665    JAL72049.1    GDIP01212157    JAJ11245.1    GDIP01043928    JAM59787.1    GDIP01166609    JAJ56793.1    GDIP01232056    JAI91345.1    LRGB01000944    KZS14862.1    GDIP01045428    JAM58287.1    GDIP01033635    JAM70080.1    GDIP01063627    JAM40088.1    GDIP01053328    JAM50387.1    GDIQ01247768    JAK03957.1    GDIP01163259    JAJ60143.1    GDIQ01024152    JAN70585.1    ACPB03021527    GBBI01002898    JAC15814.1    NCKU01000976    RWS13484.1    NEDP02002059    OWF51828.1    KQ971312    EEZ98466.1    JYDH01000016    KRY39749.1    KRY39747.1    KRY39748.1    JYDV01000054    KRZ37735.1    JYDR01000029    KRY74051.1    JYDT01000037    KRY88877.1    KRY74052.1    KRY88876.1    JYDS01000021    KRZ31839.1    KRZ37733.1    KRZ37734.1    KRY74053.1    GL448457    EFN84602.1    JYDU01000183    KRX89876.1    KRX89878.1    KRX89879.1    JYDN01000041    KRX62093.1    JYDM01000094    KRZ87845.1    KRX62092.1    JYDJ01000018    KRX49313.1    JYDL01000020    KRX23998.1    JYDK01000173    KRX73539.1    JYDW01000196    KRZ52319.1    JYDQ01000173    KRY12130.1    KRZ87846.1    KN716232    KJH49519.1    AJVK01006530    AJVK01006531    AJVK01006532    GBHO01008028    JAG35576.1    JYDI01000212    KRY48284.1    KRX62091.1    KRY48285.1    KRX49314.1    KRY48283.1    KRX73540.1    KRX23997.1    KL367489    KFD70218.1    HG805870    CDW53857.1    GEZM01066221    JAV68051.1    KRY48286.1    KK112075    KFM56661.1    DS235184    EEB13078.1    CH916368    EDW03018.1    CH940649    EDW63521.1    KRF81153.1    UYWY01020318    VDM41216.1    GGMR01010124    MBY22743.1    GFXV01001849    MBW13654.1    CH933807    EDW12142.1    CP012523    ALC38357.1    GFFV01000019    JAV39926.1    JPKZ01001180    KHN83531.1    UZAD01013163    VDN90901.1    CVRI01000058    CRL02820.1    JYDP01000016    KRZ15734.1    KRZ15737.1    KRZ15736.1    KRZ15735.1    JYDO01000049    KRZ74533.1    CM012445    RVE68648.1    CH480820    EDW54424.1   

Proteomes

UP000053268    UP000007151    UP000218220    UP000005204    UP000053240    UP000037510    + More
UP000076858    UP000015103    UP000285301    UP000242188    UP000007266    UP000038040    UP000054776    UP000054826    UP000054632    UP000054995    UP000054805    UP000008237    UP000054815    UP000054681    UP000054924    UP000055048    UP000054630    UP000054673    UP000054721    UP000054783    UP000053766    UP000079169    UP000092462    UP000054653    UP000030665    UP000054359    UP000009046    UP000001070    UP000008792    UP000265180    UP000001038    UP000050794    UP000267007    UP000265200    UP000009192    UP000092553    UP000265140    UP000031036    UP000038020    UP000278627    UP000183832    UP000055024    UP000054843    UP000001292   

PRIDE

H9JLH3   

Pfam

PF01363   FYVE        + More
PF02138   Beach
PF14844   PH_BEACH
PF00400   WD40
PF15787   DUF4704

Interpro

IPR001680   WD40_repeat        + More
IPR016024   ARM-type_fold       
IPR017455   Znf_FYVE-rel       
IPR023362   PH-BEACH_dom       
IPR017986   WD40_repeat_dom       
IPR013083   Znf_RING/FYVE/PHD       
IPR036372   BEACH_dom_sf       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR011011   Znf_FYVE_PHD       
IPR036322   WD40_repeat_dom_sf       
IPR000306   Znf_FYVE       
IPR019775   WD40_repeat_CS       
IPR000409   BEACH_dom       
IPR013320   ConA-like_dom_sf       
IPR031570   DUF4704       
IPR011989   ARM-like       
IPR011047   Quinoprotein_ADH-like_supfam       

SUPFAM

SSF81837   SSF81837        + More
SSF48371   SSF48371       
SSF57903   SSF57903       
SSF50978   SSF50978       
SSF49899   SSF49899       
SSF50998   SSF50998       

Gene 3D

1.10.1540.10     2.130.10.10     3.30.40.10     1.25.10.10    

CDD

cd01201  PH_BEACH
cd06071  Beach

ProteinModelPortal

A0A194PNT7   A0A212FAA3   A0A2A4K9R0   A0A2A4K9C2   H9JLH3   A0A0N0PD96   + More
A0A194R0Y0   A0A0L7K4U8   A0A2H1W8G9   A0A0P5P8Y6   A0A0P6FYD3   A0A0P5GCD6   A0A0P5EGG0   A0A0P5T7B4   A0A0P4ZNG2   A0A0P5ZHG9   A0A0N8AAG6   A0A0P4Y6L9   A0A162CEK7   A0A0P5ZFG6   A0A0P6AK04   A0A0P5Y374   A0A0P5YUA4   A0A0P5GE98   A0A0P5D9Z1   A0A0P6H601   T1IFV9   A0A023F476   A0A3S3SCH5   A0A210QSY5   D6W992   A0A0N4UMZ7   A0A0V1BR20   A0A0V1BTH1   A0A0V1BR86   A0A0V1JS03   A0A0V1EM44   A0A0V1FS81   A0A0V1EJV5   A0A0V1FSJ5   A0A0V1JA59   A0A0V1JT30   A0A0V1JS09   A0A0V1EJR9   E2BI71   A0A0V0XPE5   A0A0V0XPE1   A0A0V0XPF7   A0A0V0VFS4   A0A0V1NV94   A0A0V0VEV7   A0A0V0UE40   A0A0V0SBC4   A0A0V0WEC6   A0A0V1KYD0   A0A0V0ZIC1   A0A0V1NVE9   A0A0D8Y0F6   A0A3Q0II75   A0A1B0DKX8   A0A0A9YVE9   A0A0V1CH23   A0A0V0VEY0   A0A0V1CG95   A0A0V0UDH9   A0A0V1CGA1   A0A0V0WCE8   A0A0V0SBA5   A0A085NL72   A0A077Z0B9   A0A1Y1L5H9   A0A0V1CGX9   A0A087SUX2   E0VI72   B4JBT3   B4LR57   A0A3P9L505   H2MQV2   A0A183UN25   A0A3P9J0T7   A0A2S2NZU6   A0A2H8THQ8   B4KGE6   A0A0M4EP89   A0A250Y8L3   A0A3P8Z6K4   A0A0B2VJ60   A0A0N4TMS0   A0A1J1ITB5   A0A0V1HZ15   A0A0V1HYR0   A0A0V1HYE4   A0A0V1HZT2   A0A0V1MSQ1   A0A3S2Q372   B4I1L7  

PDB

4AVX     E-value=6.98295e-07,     Score=120

KEGG

105842113    no KO assigned | (RefSeq) lateral signaling target protein 2 homolog

GO

GO:0046872   GO:0016301   GO:0016021   GO:0031396   GO:0097156   GO:0005764   GO:0048749   GO:0001578   GO:0032418   GO:0022416   GO:0007420   GO:0050807   GO:0031594   GO:0046622   GO:0048786   GO:0009055   GO:0051536   GO:0004854   GO:0004855   GO:0050660   GO:0003824   GO:0005506   GO:0051537  

Length:

82

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00013

Exp number, first 60 AAs:

0.00013

Total prob of N-in:

0.19193

outside

1  -  82

 

 

Pi

24.986587

Theta

20.394989

Tajima's D

0.613996

CLR

2.337997

CSRT

0.552972351382431

Interpretation

Uncertain