SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO07211
Annotation
PREDICTED:_transmembrane_and_TPR_repeat-containing_protein_CG4341_[Papilio_machaon]
Location
Bomo_Chr12(-):8194383-8299065      View in EpiBrowser
Location in the cell
PlasmaMembrane   Reliability : 4.529
 

Sequence

CDS
ATGGATCACTGGGTGACGGCAGCGAGCGCGCTGTTGGCCTTCTTACTATACTATAACACCTTAGACGCCGGCTTCGTCTACGATGACAGACGAGCGATCCTATCCAACCCGGACGTCATCGGGCACACTCCACTATGGTCGTTATTTGAAAACGATTTCTGGGGTACTCCGCTCTCAGATCCCGGCTCGCACGGCTCCTACAGACCGCTTTGCGTTGCGACATATCGACTGAACTACGCATTCGGCGGATTCAAGCCTTGGAGCTATCACTTTCTCAACATAATATTTCATTGCACGGCCACTGTTTTAGTGGTGACAACGGCTCGGAGACTTTTACCTCCGTATTGTACGAGAGTCGGCACTGCCGTCGCTGGACTTACCTTCGCTGCACATCCGATACACACAGAAGCAGTGGCAGGGGTAGTCGGCCGAGCTGACCTCGTTTCCTGTAATTTATTCCTTTTGAGTTTCCTAATTTACACTGAACACATTCGTCTTCGCGATGAACAATATAAAAAGAAACATCGAACAATAGTGAAAGAAAAAACGATCCGGTGCGAAGTTTCGTCGAGAGATCAATCATTCCGCTTAACTTGCCACGGTTTAATGCAGCACATAATGCTAAACTTTCGTAGACTGCTAAAGGCGAGTAAATCAGGACCGATGAAGGTGTTTGACGCTTGTGATATAAAAGGAACCGTGAGACAGGTTAAGTGTCAGTACAGTGATAGTGTCAGTGGGGATACGAGTGAACTTTTGCAGTGGGTCGCGTTAGGAGGGACACTTGTGTTCGCTGCAGCCGCCACTTTGTGCAAAGAACCGGCGATAATGGTTCTGCCACTTTGCATATTCTATGACTTCCTGAGAGGTCCTCGACACGAGGAATCCTACTTTAAGTGGAGATGGCGAAGTGTCTGCGCGCTCAGCATGGGCGGCTTCGCGTTGCTTTACTGGCGGCTGAGACTAGCCGGGGTACCTGCTCCGTTTGCAGCAGCTGATAACCCAGCCTCAAGAGATCCCTCACTTTTTACAAGAGTCTACACTTTTGCCTACCTTCCCATTTTCAATTTTTTTCTTCTGATTTTCCCCTATCACCTCAGTTTCGATTGGTCTATGGACGCTATACCAAGAATAGTTACTATACTTGATCCACGTAACATCTTCACAATGGCGTTTTACGCTGTCATATCTAAAGTAACTTGGCGGCTCTTAGTTAATGAATTCAAAAAACCTCCAGATAATTTAGTCAGAGAAATGAAATTCTACAAAAAGCAAAGTTGCAAGACTAAACATAGATGGAATTATAATAACTGCAAACAATACAATAGAGGACAAGACTGTGTCGAGAGAAAAAGCTATCATGGTCCGCACAAAGAGAATGTATCATCTAAAAAGCTATTGTGTCCGTGCACCGGTTGCAAACATTCGCTCACTGATGAGCACACGAGCTTGTGCCGAGCTAGTAACAACAACAACATTATGATGCATAATTCTGTTTGCATTTGCCCAATACCTCATTCTAAAACTAGGACACAGAATCTTTACAGAATAGTTAATCGCAGTCCGCAAGTTGCATTTTTAATGTTTGTTGCTTTTATGGTTTTGCCATTTATACCTGCAACGAATTTTTTATTCTACGTCGGTTTTGTGATTGCTGAAAGAGTGTTGTATACCCCTAGTGTAGGCTTTTGTTTATTACTTGGACTTGGGGCTGGAACTTTGACAAAAAATTGGCACCGAAATGAGAAACGAAGTAGGATATTTATGATGTCGCTTCTCATATTACTTTCGGCCATGTGTGCTAGGACTTTATCAAGAAATATTGACTGGAGGGATGAAGAAAATCTGTTCAAAAGTTCGTTGCATATCAATCCACCAAAAGCGTATGGAAATCTTGGTAGTGTGCTGACGGCTCAGGGGCGAATGGCGGAAGCGGAAGCTGCGTTTTTGAAGGCGCTCAAATATAGACCAAACATGGCCGACGTTCATTACAATCTGGGAATTTTACTACAGAACCAAAGGAGGTACGGCGAAGCTATCAAAAGTTTTGAGAGAGCAATTTACTTTCGACCTTCAATGGCTCGTAAGTTGCCGAGATAA
Protein
MDHWVTAASALLAFLLYYNTLDAGFVYDDRRAILSNPDVIGHTPLWSLFENDFWGTPLSDPGSHGSYRPLCVATYRLNYAFGGFKPWSYHFLNIIFHCTATVLVVTTARRLLPPYCTRVGTAVAGLTFAAHPIHTEAVAGVVGRADLVSCNLFLLSFLIYTEHIRLRDEQYKKKHRTIVKEKTIRCEVSSRDQSFRLTCHGLMQHIMLNFRRLLKASKSGPMKVFDACDIKGTVRQVKCQYSDSVSGDTSELLQWVALGGTLVFAAAATLCKEPAIMVLPLCIFYDFLRGPRHEESYFKWRWRSVCALSMGGFALLYWRLRLAGVPAPFAAADNPASRDPSLFTRVYTFAYLPIFNFFLLIFPYHLSFDWSMDAIPRIVTILDPRNIFTMAFYAVISKVTWRLLVNEFKKPPDNLVREMKFYKKQSCKTKHRWNYNNCKQYNRGQDCVERKSYHGPHKENVSSKKLLCPCTGCKHSLTDEHTSLCRASNNNNIMMHNSVCICPIPHSKTRTQNLYRIVNRSPQVAFLMFVAFMVLPFIPATNFLFYVGFVIAERVLYTPSVGFCLLLGLGAGTLTKNWHRNEKRSRIFMMSLLILLSAMCARTLSRNIDWRDEENLFKSSLHINPPKAYGNLGSVLTAQGRMAEAEAAFLKALKYRPNMADVHYNLGILLQNQRRYGEAIKSFERAIYFRPSMARKLPR

Summary

Uniprot
A0A2A4J239   A0A1W4WP32   A0A139WIR8   A0A139WIW0   A0A1B6FYK7   A0A0P6CZN5   + More
A0A2S2QFW5   A0A369SA51   F1KV56  
Pubmed
18362917    19820115    30042472    21685128   
EMBL
NWSH01003470    PCG66227.1    KQ971338    KYB27853.1    KYB27854.1    GECZ01014501    + More
JAS55268.1    GDIP01007579    JAM96136.1    GGMS01007434    MBY76637.1    NOWV01000034    RDD43777.1    JI166408    ADY41760.1   
Proteomes
UP000218220    UP000192223    UP000007266    UP000253843   
Pfam
PF08409   DUF1736        + More
PF13181   TPR_8
PF00515   TPR_1
PF07719   TPR_2
Interpro
IPR013618   DUF1736        + More
IPR011990   TPR-like_helical_dom_sf       
IPR019734   TPR_repeat       
IPR013026   TPR-contain_dom       
IPR001440   TPR_1       
IPR013105   TPR_2       
SUPFAM
SSF48452   SSF48452       
Gene 3D
1.25.40.10    
ProteinModelPortal
A0A2A4J239   A0A1W4WP32   A0A139WIR8   A0A139WIW0   A0A1B6FYK7   A0A0P6CZN5   + More
A0A2S2QFW5   A0A369SA51   F1KV56  
PDB
6EOU     E-value=0.00094935,     Score=103

Ontologies

KEGG
101744805    K23424 protein O-mannosyl-transferase [EC:2.4.1.-] | (RefSeq) transmembrane and TPR repeat-containin
GO
GO:0016021   GO:0005515   GO:0016810   GO:0005576   GO:0006030   GO:0008061   GO:0003824   GO:0005783   GO:0016702   GO:0016295   GO:0016296  

Topology

SignalP
Position:   1 - 23,         Likelihood:  0.571920
 
 
Length:
699
Number of predicted TMHs:
5
Exp number of AAs in TMHs:
166.4864
Exp number, first 60 AAs:
20.81882
Total prob of N-in:
0.23607
POSSIBLE N-term signal
sequence
outside
1  -  3
TMhelix
4  -  26
inside
27  -  85
TMhelix
86  -  108
outside
109  -  345
TMhelix
346  -  368
inside
369  -  523
TMhelix
524  -  546
outside
547  -  555
TMhelix
556  -  578
inside
579  -  699
 
 

Population Genetic Test Statistics

Pi
230.896583
Theta
178.165554
Tajima's D
0.532376
CLR
0.296603
CSRT
0.521173941302935
Interpretation
Uncertain
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