Gene

KWMTBOMO07208

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr12(-):8044417-8045405      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.183 Nuclear   Reliability : 1.536

CDS

ATGCCACATGCCATCCGACTTTGGAATGAGCTTCCCTCCACGGTGTTTCCCGAGCGCTACGACATGTCCTTCTTCAAACAAGATTTGTGGACAGTACTTAACGGTAGGCAGCGGACGTCGCAGCGACGTGCAGATAGCAACGTCGTCTGCGGATTCATCTATGCAGACGACGTTGCTATCTGCACCGAGAGCCGCACAGAGCTACGAGAGGCACTCCTGTTGTGGAAACAGCAGTTACAAGCCGGTGGCCTAATATTGAGTGTTGCGAAGACACATTACATGTCTTTTAATGACCCAGATCCAGGTGACAACAGTCCGATTTCCATTGACGGTCAACTTGTAAACATGTGCGATCAATACAAGTATCTGGGTACTATGATGCACAGATCTGGAAATTTAAAATGCAACATTCAACACCGAATAGCCGCAGCGTGGCTAAAATGGCGAGAAGTAAGTGGTGTCACCTGCGATAGGAGGATGCCCGTTAAGCTCAAGGGTATGATCTATAAGACTATAATAAGGCCTGTTCTTATGTATGGCAGCGAAACATGGGCGGCAACCAAAAGGAACGTACATACCATTCAAGTTGCTGAAATGAAAATGCTGAGGTGGATGTGCGGCGTGACTAGGCTCGATAAAATCCGCAACGAGTACGTGCGTGGAAGTCTAGGTGTACGGGACATCGCCGACAAGATGCAGGAGAGTAGGCTGAGATGGTATGGTCACGTGAAAAGGAAGCCACCTGACTACGTCGGAAATTTGGCGCTACTGCTCGACCTCCCCGGTCGAAGACCTAGAGGCAGACCCAAGACAAGGTGGAGGGACGTAGTGCTGAAGGACAAGAGAGAATGCAATGCTGCTGACGAGGATGTCGAAGACAGAGCGAAGTGGAGGAGTAAAGTCAGGAAAGCTGACCCCACCACCATGTGGGATAAATAG

Protein

MPHAIRLWNELPSTVFPERYDMSFFKQDLWTVLNGRQRTSQRRADSNVVCGFIYADDVAICTESRTELREALLLWKQQLQAGGLILSVAKTHYMSFNDPDPGDNSPISIDGQLVNMCDQYKYLGTMMHRSGNLKCNIQHRIAAAWLKWREVSGVTCDRRMPVKLKGMIYKTIIRPVLMYGSETWAATKRNVHTIQVAEMKMLRWMCGVTRLDKIRNEYVRGSLGVRDIADKMQESRLRWYGHVKRKPPDYVGNLALLLDLPGRRPRGRPKTRWRDVVLKDKRECNAADEDVEDRAKWRSKVRKADPTTMWDK

Uniprot

D7F169   C6Y4D5   A0A2T8I3I2   A0A3B3HQB6   A0A3B3HJS0   A0A2T7D601   + More
A0A2T8I3A3   A0A2S3IS22   A0A2S3HUX6   A0A2T8KNP5   A0A2T8KX40   A0A2T7C0N1   A0A2T8JCL0   A0A2S3HU98   Q1AKH8   A0A2T7C422   A0A2T7CCN9   I7K8L3   A0A3P9JDN6   A0A2T7F8M8   A0A2T8JCD8   A0A2T8KII0   A0A3Q1K9G2   A0A3P9JAC7   A0A3P9LFN7   A0A2T8I2Z1   A0A3P9I3Z4   A0A3P9MAU2   A0A3P9K1J1   A0A3B3H8Q9   A0A3P9IJG8   A0A3B3HJN2   A0A2T8HZM0   A0A3B3H6E8   A0A3Q1HIZ5   A0A3B3HFD6   A0A016UE98   A0A2T7F0C3   A0A3P9L6C8   A0A3P9HQ45   A0A2T8KVU2   A0A3B3I2L1   A0A3B3HGK1   A0A3B3H2V1   A0A1D6EFS5   A0A3B3HQ23   A0A3B3HVS1   A0A3P9IMA9   A0A3P9MDZ4   A0A3P9MJS1   A0A3B3H692   A0A3B3HIQ7   A0A3B3HSD0   A0A3B3ILX4   A0A3B3HTF4   A0A3B3HMM1   A0A3B3H644   A0A3B3IBX6   A0A3P9JLZ1   A0A3B3IM62   A0A3B3IDD8   A0A3B3H9R1   A0A3B3IM16   A0A3P9HCZ5   A0A3B3H5C8   A0A3B3IJY6   A0A3B3IEJ9   A0A3B3HVG5   A0A3B3IN57   A0A2T8I0K1   A0A2I0BDY2   A0A3B3HQS3   A0A3B3H879   A0A3B3H5B4   A0A3B3IIV8   A0A3B3HW87   A0A3P9MCH9   A0A2T7DY88   A0A3B3I4X3   A0A3P9HH58   A0A3B3I0B4   A0A3B3I8U4   A0A3B3HQW9   A0A3B3HYL2   A0A3P9IV37   A0A3B3H3Q1   A0A3B3INX9   A0A3B3IFB5   A0A3B3HXS2   A0A3B3ICX9   A0A3B3IC09   A0A3B3IEV4   A0A3B3HQP1   A0A3B3HT45   A0A3B3HV05   A0A3B3HQ01   A0A3P9JZH0   A0A2T7C6D7   A0A3P9KEZ0   A0A3P9LQU2  

Pubmed

20470440    17554307    16699558    25730766    28902843   

EMBL

FJ265554    ADI61822.1    CU462842    CBA11992.1    CM008054    PVH32202.1    + More
CM009754    PUZ51002.1    PVH32156.1    PAN50441.2    CM008050    PAN30387.1    CM008047    PVH63795.1    CM008049    CM008046    PVH47980.1    PVH66734.1    CM009757    PUZ36875.1    PVH47648.1    PAN29912.1    DQ070849    ABB00038.1    PUZ38090.1    PUZ41102.1    HE805490    CCH50976.1    CM009749    PUZ76420.1    PVH47587.1    CM008048    PVH61993.1    PVH32022.1    PVH30886.1    JARK01001380    EYC13251.1    CM009750    PUZ73532.1    PVH66296.1    CM007648    ONM19028.1    PVH31207.1    KZ451888    PKA66013.1    CM009752    PUZ60542.1    PUZ38902.1   

Proteomes

UP000243499    UP000001038    UP000244336    UP000265200    UP000265040    UP000265180    + More
UP000024635    UP000007305    UP000236161   

PRIDE

D7F169   

Pfam

PF00078   RVT_1

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR027124   Swc5/CFDP2       
IPR001229   Jacalin-like_lectin_dom       
IPR036404   Jacalin-like_lectin_dom_sf       

SUPFAM

SSF56219   SSF56219        + More
SSF51101   SSF51101       

Gene 3D

3.60.10.10     2.100.10.30    

ProteinModelPortal

D7F169   C6Y4D5   A0A2T8I3I2   A0A3B3HQB6   A0A3B3HJS0   A0A2T7D601   + More
A0A2T8I3A3   A0A2S3IS22   A0A2S3HUX6   A0A2T8KNP5   A0A2T8KX40   A0A2T7C0N1   A0A2T8JCL0   A0A2S3HU98   Q1AKH8   A0A2T7C422   A0A2T7CCN9   I7K8L3   A0A3P9JDN6   A0A2T7F8M8   A0A2T8JCD8   A0A2T8KII0   A0A3Q1K9G2   A0A3P9JAC7   A0A3P9LFN7   A0A2T8I2Z1   A0A3P9I3Z4   A0A3P9MAU2   A0A3P9K1J1   A0A3B3H8Q9   A0A3P9IJG8   A0A3B3HJN2   A0A2T8HZM0   A0A3B3H6E8   A0A3Q1HIZ5   A0A3B3HFD6   A0A016UE98   A0A2T7F0C3   A0A3P9L6C8   A0A3P9HQ45   A0A2T8KVU2   A0A3B3I2L1   A0A3B3HGK1   A0A3B3H2V1   A0A1D6EFS5   A0A3B3HQ23   A0A3B3HVS1   A0A3P9IMA9   A0A3P9MDZ4   A0A3P9MJS1   A0A3B3H692   A0A3B3HIQ7   A0A3B3HSD0   A0A3B3ILX4   A0A3B3HTF4   A0A3B3HMM1   A0A3B3H644   A0A3B3IBX6   A0A3P9JLZ1   A0A3B3IM62   A0A3B3IDD8   A0A3B3H9R1   A0A3B3IM16   A0A3P9HCZ5   A0A3B3H5C8   A0A3B3IJY6   A0A3B3IEJ9   A0A3B3HVG5   A0A3B3IN57   A0A2T8I0K1   A0A2I0BDY2   A0A3B3HQS3   A0A3B3H879   A0A3B3H5B4   A0A3B3IIV8   A0A3B3HW87   A0A3P9MCH9   A0A2T7DY88   A0A3B3I4X3   A0A3P9HH58   A0A3B3I0B4   A0A3B3I8U4   A0A3B3HQW9   A0A3B3HYL2   A0A3P9IV37   A0A3B3H3Q1   A0A3B3INX9   A0A3B3IFB5   A0A3B3HXS2   A0A3B3ICX9   A0A3B3IC09   A0A3B3IEV4   A0A3B3HQP1   A0A3B3HT45   A0A3B3HV05   A0A3B3HQ01   A0A3P9JZH0   A0A2T7C6D7   A0A3P9KEZ0   A0A3P9LQU2  

KEGG

105842995    no KO assigned | (RefSeq) RNA-directed DNA polymerase from mobile element jockey-like

GO

GO:0003964   GO:0004519   GO:0016740  

PANTHER

PTHR23227  

Length:

312

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00531

Exp number, first 60 AAs:

0.00105

Total prob of N-in:

0.02261

outside

1  -  312

 

 

Pi

273.518458

Theta

150.232955

Tajima's D

4.547944

CLR

0

CSRT

0.999950002499875

Interpretation

Uncertain