Gene

KWMTBOMO07207

Pre Gene Modal

BGIBMGA010380

Annotation

seminal_vesicle_secretory_protein_2_[Cricetulus_griseus]

Location

Bomo_Chr12(-):7968744-7969785      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.741

CDS

ATGTCGAGAGCACCTGAATTAGACTACGAGGGTGCAAATATAAAGACGTATGTTCCATTAAATAGTTATATGAAAATGTCAAGAGCACCTGATTTGGACGACGAGGGCGCAAACATAAAGACGTATGTTCAATTAAATAGTGATGTGAAAATGTCGAGAGCACCTGAACTAGACTACGAGGGCGCAAATATAAAAACGTATGTTCAATTAAATAGTGATGTGAAAATGTCAAGAGCACCTGAATTAGACGACGAGGGCGCAAACATAAAGACGTATGTTCAATTAAATAGTGATGTGAAAATGTCGAGAGCACCTGAACTAGACTACGAGGGCGCAAATATAAAAACGTATGTTCAATTAAATAGTGATGTGAAAATGTCAAGAGCACCTGAATTAGACGACGAAGGCACAAATATAAAGACGTATGTTCAATTAAATAGTGATGTGAAAATGTCGAGAGCACCTGAATTAGACTACGAGGGTGCAAATATAAAGACTTATGTTCAATTAAAAAGTGATGTGAAAATGTCGAGAGCACCTGAATTAGACGACGAAGGCACAAATATAAAGACGTATGTTCAATTAAATAGTGATGTGAAAATGTCGAGAGCACCTGAATTAGACTACGAGGGTGCAAATATAAAGACTTATGTTCAATTAAAAAGTGATGTGAAAATGTCGAGAGCACCTGAATTAGACGACGAGGGCGCAAATATAAAAACGTATGTTCAATTAAATAGTGATGTGAAAATGTCGAGAGCACCTGAATTAGACGACGAGGGCGCAAATATAAAAACGTATGTTCAATTAAATAGTGATGTGAAAATGTCGAGAGCACCTGAATTAGACGACGACGGCGCAAATATAAAGACTATGTTCAATTAA

Protein

MSRAPELDYEGANIKTYVPLNSYMKMSRAPDLDDEGANIKTYVQLNSDVKMSRAPELDYEGANIKTYVQLNSDVKMSRAPELDDEGANIKTYVQLNSDVKMSRAPELDYEGANIKTYVQLNSDVKMSRAPELDDEGTNIKTYVQLNSDVKMSRAPELDYEGANIKTYVQLKSDVKMSRAPELDDEGTNIKTYVQLNSDVKMSRAPELDYEGANIKTYVQLKSDVKMSRAPELDDEGANIKTYVQLNSDVKMSRAPELDDEGANIKTYVQLNSDVKMSRAPELDDDGANIKTMFN

Uniprot

H9JLH9   A0A2G5TWD2   A0A3N0YM34   A0A0V0G6A2   A0A2A4JFA6   B4PWY5   + More
A0A069DTB1   A0A3L7HD85   A0A023F6U4   A0A2C9L014   A0A0L7LJ78   A0A0L8I668   A0A0L8H383   A0A224XSR3   A0A2G5TLK0   A0A0L8GU17   A0A0E3L2R5   A0A1Z5KMG1   A0A0E3NTN0   A0A0L8FYV2   A0A1Q7G2V3   A0A1Q7PNI3   A0A1Q7CV00   A0A3B4USG8   A0A1C3KMF4   A0A1F6WPI1   A7SLL3   A0A0L8FRI4   A0A0L8I9P6   A0A3B4WDE6   A0A3B9SJC7   A0A0L8HPU0   A0A1Z5KJQ1   A0A0Y9WPU4   A0A077XFM2   A0A162QZF5   A0A0R2SVM0   L8ID89   A0A0L8GP37   A0A3N0YPF3   A0A077Y4X4   A0A069DT83   A0A0V0G633   Q7RR45   A0A3Q2G4Z9   A0A1D3SFW1   A0A078KAW2   A0A3S1A567   D7FJ32   A0A146QTD2   A0A146TL91   A0A0R1ZPW9   A0A146R079   A0A0L8I774   A0A2X1IBI1   A0A2R6TBK3   A0A0V0G4L2   A0A2P4PMB7   A0A0L8GZW0   A0A0G3CFF0   A0A0U1MEU8  

Pubmed

19121390    17994087    17550304    26334808    29704459    25474469    + More
15562597    26227816    25634988    27843720    27774985    17615350    30148503    25359557    22751099    12368865    30590650    20520714    26415554    24277808    29355972    26413197   

EMBL

BABH01005722    PDUG01000004    PIC31592.1    RJVU01035944    ROL47276.1    GECL01002539    + More
JAP03585.1    NWSH01001797    PCG70113.1    CM000162    EDX02869.2    KRK06991.1    KRK06992.1    GBGD01002007    JAC86882.1    RAZU01000236    RLQ63783.1    GBBI01001767    JAC16945.1    JTDY01000906    KOB75485.1    KQ416467    KOF96879.1    KQ419393    KOF83733.1    GFTR01005263    JAW11163.1    PDUG01000005    PIC28160.1    KQ420377    KOF80473.1    CP009503    AKB18481.1    BDSP01000257    GAX27520.1    CP009504    AKB21967.1    KQ425217    KOF69759.1    MNFB01000067    OLC33505.1    MNHP01000116    OLD41079.1    MNED01000050    OLB90450.1    LT594505    SBT75169.1    MFUQ01000012    OGI83746.1    DS469699    EDO35428.1    KQ427186    KOF67326.1    KQ416263    KOF97745.1    DMCC01000041    HAG05473.1    KQ417600    KOF91174.1    BDSP01000247    GAX26486.1    LT160029    CXI43870.1    LK023124    CDS46754.1    LSYZ01000014    OAB63509.1    LICE01000005    KRO76419.1    JH881566    ELR53524.1    KQ420947    KOF78776.1    RJVU01033520    ROL48085.1    LK934637    CDU18069.1    GBGD01001729    JAC87160.1    GECL01002671    JAP03453.1    AABL01000239    EAA19159.1    LT608257    SCO62179.1    LM993663    CDZ12342.1    RSCM01000016    RUS93895.1    FN647904    CBJ49071.1    GCES01127372    JAQ58950.1    GCES01092621    JAQ93701.1    AYYO01000027    KRM55252.1    GCES01124558    JAQ61764.1    KOF96880.1    UARM01000063    SPW32420.1    LXWN01000001    PTL88017.1    GECL01003150    JAP02974.1    AUPC02000189    POG66532.1    KQ419747    KOF82477.1    CP008746    AKJ37842.1    CVOQ01000007    CRI07883.1   

Proteomes

UP000005204    UP000230233    UP000218220    UP000002282    UP000273346    UP000076420    + More
UP000037510    UP000053454    UP000033065    UP000033112    UP000261420    UP000001593    UP000261360    UP000074855    UP000051420    UP000008553    UP000265020    UP000276103    UP000002630    UP000051679    UP000241022    UP000018888    UP000035331    UP000039437   

PRIDE

H9JLH9   

Pfam

PF00096   zf-C2H2        + More
PF00136   DNA_pol_B
PF08490   DUF1744
PF03104   DNA_pol_B_exo1
PF10578   SVS_QK
PF00373   FERM_M
PF09379   FERM_N
PF02412   TSP_3
PF00805   Pentapeptide
PF13573   SprB
PF09756   DDRGK
PF03130   HEAT_PBS
PF03797   Autotransporter

Interpro

IPR036236   Znf_C2H2_sf        + More
IPR013087   Znf_C2H2_type       
IPR000782   FAS1_domain       
IPR029703   POL2       
IPR012337   RNaseH-like_sf       
IPR042087   DNA_pol_B_C       
IPR013697   DNA_pol_e_suA_C       
IPR036397   RNaseH_sf       
IPR006172   DNA-dir_DNA_pol_B       
IPR006134   DNA-dir_DNA_pol_B_multi_dom       
IPR006133   DNA-dir_DNA_pol_B_exonuc       
IPR011004   Trimer_LpxA-like_sf       
IPR018942   Seminal_vesicle_protein_repeat       
IPR002080   SVP_II_CS       
IPR035963   FERM_2       
IPR014352   FERM/acyl-CoA-bd_prot_sf       
IPR019749   Band_41_domain       
IPR000299   FERM_domain       
IPR029071   Ubiquitin-like_domsf       
IPR018979   FERM_N       
IPR019747   FERM_CS       
IPR019748   FERM_central       
IPR030696   Band4.1-like4A       
IPR036278   Sialidase_sf       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR036034   PDZ_sf       
IPR001478   PDZ       
IPR028974   TSP_type-3_rpt       
IPR003367   Thrombospondin_3-like_rpt       
IPR026341   Bac_Flav_CTERM       
IPR036390   WH_DNA-bd_sf       
IPR019153   DDRGK_dom-contain       
IPR036388   WH-like_DNA-bd_sf       
IPR006626   PbH1       
IPR001646   5peptide_repeat       
IPR025667   SprB_repeat       
IPR011989   ARM-like       
IPR004155   PBS_lyase_HEAT       
IPR016024   ARM-type_fold       
IPR027417   P-loop_NTPase       
IPR005123   Oxoglu/Fe-dep_dioxygenase       
IPR022263   KxYKxGKxW       
IPR036709   Autotransporte_beta_dom_sf       
IPR005546   Autotransporte_beta       
IPR014262   Extracellular_HAF       
IPR036514   SGNH_hydro_sf       

SUPFAM

SSF57667   SSF57667        + More
SSF53098   SSF53098       
SSF51161   SSF51161       
SSF47031   SSF47031       
SSF54236   SSF54236       
SSF50939   SSF50939       
SSF50156   SSF50156       
SSF103647   SSF103647       
SSF46785   SSF46785       
SSF52540   SSF52540       
SSF48371   SSF48371       
SSF103515   SSF103515       

Gene 3D

1.10.132.60     3.30.420.10     1.20.80.10     2.130.10.10     4.10.1080.10     1.10.10.10     1.25.10.10     2.40.128.130     3.40.50.1110    

CDD

cd14473  FERM_B-lobe

ProteinModelPortal

H9JLH9   A0A2G5TWD2   A0A3N0YM34   A0A0V0G6A2   A0A2A4JFA6   B4PWY5   + More
A0A069DTB1   A0A3L7HD85   A0A023F6U4   A0A2C9L014   A0A0L7LJ78   A0A0L8I668   A0A0L8H383   A0A224XSR3   A0A2G5TLK0   A0A0L8GU17   A0A0E3L2R5   A0A1Z5KMG1   A0A0E3NTN0   A0A0L8FYV2   A0A1Q7G2V3   A0A1Q7PNI3   A0A1Q7CV00   A0A3B4USG8   A0A1C3KMF4   A0A1F6WPI1   A7SLL3   A0A0L8FRI4   A0A0L8I9P6   A0A3B4WDE6   A0A3B9SJC7   A0A0L8HPU0   A0A1Z5KJQ1   A0A0Y9WPU4   A0A077XFM2   A0A162QZF5   A0A0R2SVM0   L8ID89   A0A0L8GP37   A0A3N0YPF3   A0A077Y4X4   A0A069DT83   A0A0V0G633   Q7RR45   A0A3Q2G4Z9   A0A1D3SFW1   A0A078KAW2   A0A3S1A567   D7FJ32   A0A146QTD2   A0A146TL91   A0A0R1ZPW9   A0A146R079   A0A0L8I774   A0A2X1IBI1   A0A2R6TBK3   A0A0V0G4L2   A0A2P4PMB7   A0A0L8GZW0   A0A0G3CFF0   A0A0U1MEU8  

KEGG

NA   

GO

GO:0003676   GO:0008270   GO:0006281   GO:0003887   GO:0000166   GO:0003677   GO:0008622   GO:0006260   GO:0040034   GO:0000981   GO:0005856   GO:0016021   GO:0005509   GO:0007155   GO:0016491  

PANTHER

PTHR10670   PTHR23280:SF4  

Length:

294

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02563

outside

1  -  294

 

 

Pi

144.949943

Theta

166.510566

Tajima's D

-0.331045

CLR

12.776794

CSRT

0.280185990700465

Interpretation

Uncertain