Gene

KWMTBOMO07200  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA010571

Annotation

ribosomal_protein_L9_[Bombyx_mori]

Location

Bomo_Chr12(+):7788437-7790974      View in EpiBrowser

Full name

60S ribosomal protein L9      

Location in the cell

Cytoplasmic   Reliability : 2.252 Mitochondrial   Reliability : 1.841

CDS

ATGAAGCAAATTGTAGCAAATCAGAAAGTCAAAATCCCAGACGGGCTTACGGTCCATGTGAAATCGCGTCTGGTGACAGTTAAAGGGCCCCGCGGAGTTCTCAAAAGGAACTTCAAACACTTGGCTGTTGACATTCGCATGGTAAACCCTCGTCTCCTGAAGGTTGAGAAATGGTTCGGATCCAAAAAGGAGCTTGCCGCCGTGAGGACAGTCTGTTCACATGTAGAGAACATGATTAAAGGAGTAACTAAAGGCTTCCAATACAAGATGCGTGCTGTGTATGCTCACTTCCCCATTAACTGTGTCACCACTGAGGGTAATTCAATTATTGAGATACGTAACTTCTTGGGTGAGAAATACATCAGAAGGGTAAAGATGGCACCTGGTGTGACTGTCGTTAACTCTCCAAAACAAAAGGATGAACTAATCATTGAAGGCAACTCTTTGGAAGATGTCTCTAGCTCTGCTGCTCTCATCCAGCAATCTACTACAGTCAAGAATAAGGATATCAGAAAGTTCTTGGATGGTCTTTATGTATCTGAGAAAACAACTGTTGTGCTAGATGACATATAA

Protein

MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVLDDI

Similarity

Belongs to the universal ribosomal protein uL6 family.

Keywords

Ribonucleoprotein   Ribosomal protein   3D-structure   Complete proteome   Reference proteome  

Feature

chain  60S ribosomal protein L9

Uniprot

Q5UAT1   S4NX06   A0A0L7LGQ0   A0A3S2LVN6   E7DYZ3   G0ZEB0   + More
A0A2H1W7A2   Q963B7   I4DN04   A0A212FL44   A0A194R0F9   I4DIH4   A7KCY2   A0A2A4JRL3   A0A194PJ76   Q5MGL6   D1LYL2   A0A026WFS2   E2BE47   D1M7X2   A0A3G1T1J6   A0A158P0U9   A0A232F8Y0   A0A0J7KKG9   A0A348G693   E2A2I3   V9IKT8   A0A2A3ERX7   A0A151WW52   F4WUW7   A0A088A0L9   A0A195AUP2   A0A154NYW9   V5GUX4   Q4GXL0   D1ZZS1   A0A195CXL0   A0A151IUI7   A0A151JZ45   A0A0C4Y3G2   A0A2K8FTM5   A0A1B6CH47   A0A0L7QXD7   J3JTT0   G1C2I7   Q4GXK8   A0A224XKQ0   A0A1B6G3Q1   A0A023F972   A0A069DPP9   A0A0V0G2S9   E9IZD2   A0A0P4VRT6   R4FNQ5   A0A0X7YJH9   A0A2J7RQG5   A0A0C9QF42   A0A067RCA4   R4WPX3   A0A146LYJ9   A0A0A9W8K1   A0A0K8T3M5   A0A0N0BL13   R4UJA5   Q56FH7   A0A1Y1LB62   A0A2P8XWX1   Q4GXK9   E0VFA0   A0A0K8TR54   A0A1I8MKJ2   A0A1L8ECK4   Q0PXW1   A0A1I8P3C8   A0A1A9YH39   A0A1B0C0Q6   A0A1A9ZEX1   A0A1A9WLY8   D3TR48   A0A1D1Z8W9   A2I3Z8   A0A0L0C7R5   C4WT97   A0A226E7G0   A0A0X9GNE5   A0A3B0JMY5   A0A1L8DS27   A0A0R3NW50   B4G761   Q29CL6   B4JBE5   B4LV40   A0A3B0JLG8   A0A0M3QTQ4   A0A1L8EBH1   B3MJZ8   X2JDU0   B4HWZ5   B4QA88   P50882  

Pubmed

19121390    23622113    26227816    14668217    22651552    22118469    + More
26354079    17603110    16023793    24508170    30249741    20798317    21347285    28648823    21719571    18362917    19820115    22516182    23537049    25474469    26334808    21282665    27129103    24845553    23691247    26823975    25401762    28004739    29403074    20566863    26369729    25315136    20353571    26108605    15632085    17994087    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    22936249    8676882    23636399   

EMBL

BABH01005704    AY769277    AAV34819.1    GAIX01012352    JAA80208.1    JTDY01001258    + More
KOB74376.1    RSAL01000003    RVE54754.1    HQ424696    ADT80640.1    JF264988    AEL28819.1    ODYU01006772    SOQ48927.1    AF391091    AK402672    BAM19294.1    AGBW02007871    OWR54461.1    KQ460883    KPJ11187.1    AK401092    BAM17714.1    EF207975    ABS57450.1    NWSH01000781    PCG74254.1    KQ459603    KPI92774.1    AY829770    AAV91384.1    GU084286    ACY95319.1    KK107235    QOIP01000009    EZA54902.1    RLU18991.1    GL447755    EFN86034.1    GU120396    ACY71246.1    MG992423    AXY94861.1    ADTU01005815    NNAY01000665    OXU27105.1    LBMM01006121    KMQ90908.1    FX985635    BBF97966.1    GL436038    EFN72386.1    JR049350    AEY60934.1    KZ288191    PBC34515.1    KQ982691    KYQ52090.1    GL888378    EGI62031.1    KQ976738    KYM75694.1    KQ434783    KZC04866.1    GALX01000537    JAB67929.1    AM049013    CAJ17250.1    KQ971338    EFA01805.1    KQ977141    KYN05398.1    KQ980961    KYN11041.1    KQ981414    KYN41878.1    KM885285    AJF93905.1    KY618832    AQW43018.1    GEDC01024586    JAS12712.1    KQ414705    KOC63204.1    APGK01024550    BT126639    KB740551    KB631878    AEE61602.1    ENN80387.1    ERL86896.1    JF728806    AEJ38208.1    AM049015    CAJ17251.1    GFTR01003379    JAW13047.1    GECZ01020733    GECZ01012712    GECZ01000921    JAS49036.1    JAS57057.1    JAS68848.1    GBBI01000666    JAC18046.1    GBGD01003094    JAC85795.1    GECL01003745    JAP02379.1    GL767121    EFZ14104.1    GDKW01001311    JAI55284.1    ACPB03003574    GAHY01001199    JAA76311.1    KC507332    AHB12455.1    NEVH01001337    PNF43081.1    GBYB01013118    JAG82885.1    KK852559    KDR21397.1    AK417726    BAN20941.1    GDHC01006962    JAQ11667.1    GBHO01038812    JAG04792.1    GBRD01005684    JAG60137.1    KQ435687    KOX81388.1    KC632320    AGM32134.1    AY961523    AAX62425.1    GEZM01060836    JAV70864.1    PYGN01001224    PSN36506.1    AM049014    CAJ17273.1    DS235110    EEB12056.1    GDAI01001193    JAI16410.1    GFDG01002427    JAV16372.1    DQ673425    ABG81998.1    JXJN01023734    CCAG010017495    EZ423900    ADD20176.1    GDJX01004600    JAT63336.1    EF070501    ABM55567.1    JRES01000799    KNC28297.1    ABLF02031629    AK340526    BAH71117.1    LNIX01000006    OXA53270.1    KP735523    ALO78729.1    OUUW01000006    SPP81702.1    GFDF01004959    JAV09125.1    CH475452    KRT05330.1    CH479180    CH479693    EDW28315.1    EDW36722.1    EAL29296.2    CH916368    EDW02950.1    CH940649    EDW63289.1    SPP81703.1    CP012523    ALC39289.1    GFDG01002692    JAV16107.1    CH902620    EDV32453.1    AE014134    AHN54340.1    CH480818    EDW52540.1    CM000361    CM002910    EDX04643.1    KMY89675.1    X94613    BT022718   

Proteomes

UP000005204    UP000037510    UP000283053    UP000007151    UP000053240    UP000218220    + More
UP000053268    UP000053097    UP000279307    UP000008237    UP000005205    UP000215335    UP000036403    UP000000311    UP000242457    UP000075809    UP000007755    UP000005203    UP000078540    UP000076502    UP000007266    UP000078542    UP000078492    UP000078541    UP000053825    UP000019118    UP000030742    UP000015103    UP000235965    UP000027135    UP000053105    UP000245037    UP000009046    UP000095301    UP000079169    UP000095300    UP000092443    UP000092460    UP000092445    UP000091820    UP000092444    UP000037069    UP000007819    UP000198287    UP000268350    UP000001819    UP000008744    UP000001070    UP000008792    UP000092553    UP000007801    UP000000803    UP000001292    UP000000304   

PRIDE

Q5UAT1    Q963B7    A0A088A0L9    X2JDU0    P50882   

Pfam

PF00347   Ribosomal_L6

Interpro

IPR020040   Ribosomal_L6_a/b-dom        + More
IPR002359   Ribosomal_L6_CS2       
IPR036789   Ribosomal_L6_a/b-dom_sf       
IPR000702   Ribosomal_L6       

SUPFAM

SSF56053   SSF56053       

Gene 3D

3.90.930.12    

ProteinModelPortal

Q5UAT1   S4NX06   A0A0L7LGQ0   A0A3S2LVN6   E7DYZ3   G0ZEB0   + More
A0A2H1W7A2   Q963B7   I4DN04   A0A212FL44   A0A194R0F9   I4DIH4   A7KCY2   A0A2A4JRL3   A0A194PJ76   Q5MGL6   D1LYL2   A0A026WFS2   E2BE47   D1M7X2   A0A3G1T1J6   A0A158P0U9   A0A232F8Y0   A0A0J7KKG9   A0A348G693   E2A2I3   V9IKT8   A0A2A3ERX7   A0A151WW52   F4WUW7   A0A088A0L9   A0A195AUP2   A0A154NYW9   V5GUX4   Q4GXL0   D1ZZS1   A0A195CXL0   A0A151IUI7   A0A151JZ45   A0A0C4Y3G2   A0A2K8FTM5   A0A1B6CH47   A0A0L7QXD7   J3JTT0   G1C2I7   Q4GXK8   A0A224XKQ0   A0A1B6G3Q1   A0A023F972   A0A069DPP9   A0A0V0G2S9   E9IZD2   A0A0P4VRT6   R4FNQ5   A0A0X7YJH9   A0A2J7RQG5   A0A0C9QF42   A0A067RCA4   R4WPX3   A0A146LYJ9   A0A0A9W8K1   A0A0K8T3M5   A0A0N0BL13   R4UJA5   Q56FH7   A0A1Y1LB62   A0A2P8XWX1   Q4GXK9   E0VFA0   A0A0K8TR54   A0A1I8MKJ2   A0A1L8ECK4   Q0PXW1   A0A1I8P3C8   A0A1A9YH39   A0A1B0C0Q6   A0A1A9ZEX1   A0A1A9WLY8   D3TR48   A0A1D1Z8W9   A2I3Z8   A0A0L0C7R5   C4WT97   A0A226E7G0   A0A0X9GNE5   A0A3B0JMY5   A0A1L8DS27   A0A0R3NW50   B4G761   Q29CL6   B4JBE5   B4LV40   A0A3B0JLG8   A0A0M3QTQ4   A0A1L8EBH1   B3MJZ8   X2JDU0   B4HWZ5   B4QA88   P50882  

PDB

4V6W     E-value=6.72057e-76,     Score=718

KEGG

692664    K02940 large subunit ribosomal protein L9e | (RefSeq) RpL9; ribosomal protein L9

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0006412   GO:0005840   GO:0019843   GO:0003735   GO:0016021   GO:0022625   GO:0002181   GO:0022626   GO:0005622   GO:0004656   GO:0005783   GO:0016702   GO:0016295   GO:0016296  

PANTHER

PTHR11655  

Length:

190

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.114

Exp number, first 60 AAs:

0

Total prob of N-in:

0.35755

outside

1  -  190

 

 

Pi

61.105485

Theta

155.371052

Tajima's D

-1.124105

CLR

1.929031

CSRT

0.117394130293485

Interpretation

Uncertain