SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO07199
Pre Gene Modal
BGIBMGA010383
Annotation
PREDICTED:_kinesin-like_protein_costa_[Amyelois_transitella]
Location
Bomo_Chr12(-):7780228-7787426      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 3.989
 

Sequence

CDS
ATGGATATTCCAGTACAAATCGCCATTCGTTTGAAGCCCCCGAGCTTGGCAGATTCTACTCAATGCATATTCAGTAATCCTGTAACCCAAATTGTTATTACGGAAAGTGGACAGACGTTTCATGTGAATCGAGCTTTGCCTGTTGATTGTAGTCAGGCTCATCTGTTCAATTCGTTTATGATACCTCAAATAAACTGTTTCCTCGATGGCTGTGATACATCTGTTGTTGTTTTTGGTCAGAGTCAGACTGGCAAAACTTACACGCTCTTTGGTCCAGGCTTCGAGTGCATTCACAGTGAATGTGATCAAGGAATCGTTCCAAGATTTTTAACTGAAATATTTCACAAACTGAATCAAATGTCTGAGAGAGAATTTATACTTCACATAACATGGATGCAAGTTGTCACCAATAATATATTTGATGTTCTTGGAGTCGGTTTAGTTAGGTGTTGTAATGTGGAGGAAGCTTTCCAGTATTTACAGCTAGGTTGGAGACAGCAATGCCAGGGGAATTACCATACAGTGTTTACTGTGACTGTTGAACAAAAGTGGGTTGGAACTAATGGCACCTTGAATCATAGAATGTCCACTGCTAGTTTTTGTGAACTTGCAGCATATCCTGATCCTGGTCTTTATACTTTAGAAAATATATTGAAAGAACTATTAGCTGGAAATCCTTCTAAACAGGTTAATTATGATCAGTGCATATTGACAGCAATGCTGCGTGATTCATTTGGAGGCAGAGCATTCACATGGGTCATTGGATGTATTAGTACAGAACCTGAAGACTACCAGGACACATTAAAGATACTGAACCTCTGCCTTTGCTGTAGAGGAATCAAAAACTTTGTAACAGTGAATTTATTTGCTGATAATAATACACCAGTTTACTCTGAGAAGGCAATCAATAGTGCTGATAACAATTTCAATTTACAATTTGCAACTTCACAATGGATTAAGTTGGTTTCGAACGCTGAAGGTCTTTTCAATAAGATCCTTCAATCAAAATCACTTTCAGAAACTGATATCAATCAAGTTAGCGAATGGCTATTTTTGAAAGCTGAATGTGATGAATGTTTAAATGCAGATGGAACTTTAGATAACAAAGATGTAACAATAAAACAAGGCTTACCAAGAATAGCAGAAGATACAGAGCCTAGTGAACTAAGTGAATCTGATGTAGATTCTGGTTCTGAGGAAGATACTCATTCTGACACAGTATTTCAAGATAAAGTCGAAAAATTTATGGAATATTTTAGGGAAAAGAATGATGAACTCTTTGCAGATAGATGTGAAGAATACTTGAATCATATTGACTCTGATGATATCACAATTTCAGAAACAAGTGGGTCTCAATCATTACCTGTCATGACATCACATTCCAATTCTGGACGTAGAAGAACTATACAACCTGGTGAAAGCTTGTCAGGGGCAGAGCTGGAGTTGTTAAGGAAAGTTGCAGCAAAAGCAATCTCACCAGAAACTCAAAAGATACTAATAGAATCTCATAAAAAAGACATGGATCCGGAACCAAAATTAATTGAAAGGGAGTTACTCAAAATGATAGATTCTCCAAAGACTGAAGAGATTTGTAAAAAGTATAAGATAACAAAAGAAAAATATACACAAAAACAGATATTAACTAGAAAACTATCTAAAGAAATAAGTAGTAGTCAAACACAGCTAAAAGAATTGATAAACCTCTGTATTGCAAAAGAGAGGCTTATAGATGATCTCACTAAAGCTATGTCTCAGAATACTCAGAACAAATCTTATGATAAAAATTCAGACTCTAATTTTGTTGAACAAGATACTGTGAAGGAAATCAAGAGACATGAAATTAATTTAAAGACTTATAAAAAACAAATTGATCAAATAAAAAGACAAATCAAGAAAGATGAAAAACGTAAAAATACCTTAGATGTAGAACTTGTAAAAGATAAATTAAAACTGGATGATTTGTCAGACACTTCAATTGAAGTCAAAGATAAGAAAGTTAATTCACTGAAACATTTCACTAACAGAATCACGCAATTAGACAGTATACTAAAGGAGAAAACTAATGATTTAGCCAGTTCAGAGCACTCCAAAGAGAAAGAAGTGATATTAAGAAAAGAAATTAAAAACTTGAGAAAAACCAGAGAATGTTTACACGATCAAAGATGTAGTTTAGGTCATAAGAGAAAAATTTACAAGTCCCTGTCTGATTCTGAAGAACGCAAATTACTCGAATGTGAAGAAGCTATAGAAGCAATAGACACAGCAATTGAGTACAAGAACAATTTAATATGTGGCAAATCACCATCTGCATCTTTGTCTGATTCATTCGACAACAAGGACTCAAGAAGTAGAGGAGAACAGATGTTGATGGCTAGACTGGATAAACTTTCACATGATGAAATTAAGACATTGTTATATAGATATTTTCAAAAGGTAGTGGATTTACGTGGCGCATGTGCTGCCTTAGAAGCCGGTGTAGCGGCTGCCAGTGAAGAGGCTACTATTTGGCGAGCCCGAGCTGCTGCGGCTTGGAGACACGCGCAACGGGTTCGATCACATGCTCACACGAGACATTTCCAATCGTTTCATCGATGTTTGGACGGAGGAAACCCAGAGAGGGCCCTGTCTCTCGGCATGACAACAGATTCGGAAACATCGGATGATGCCATGCGCCTGGTCGACCGAATGAAACAGCTTGCAAGATGCAATCCGCCTCCCATCATACCTAGTCAGAACCTGCGTCAGTTGATGCCCGCAACAAATTTACCAGTAGCAAAAGTCACGAAAGAGAAGAACAAACTTGTTATTGTACAGCAAAGCAAGAAACACTGA
Protein
MDIPVQIAIRLKPPSLADSTQCIFSNPVTQIVITESGQTFHVNRALPVDCSQAHLFNSFMIPQINCFLDGCDTSVVVFGQSQTGKTYTLFGPGFECIHSECDQGIVPRFLTEIFHKLNQMSEREFILHITWMQVVTNNIFDVLGVGLVRCCNVEEAFQYLQLGWRQQCQGNYHTVFTVTVEQKWVGTNGTLNHRMSTASFCELAAYPDPGLYTLENILKELLAGNPSKQVNYDQCILTAMLRDSFGGRAFTWVIGCISTEPEDYQDTLKILNLCLCCRGIKNFVTVNLFADNNTPVYSEKAINSADNNFNLQFATSQWIKLVSNAEGLFNKILQSKSLSETDINQVSEWLFLKAECDECLNADGTLDNKDVTIKQGLPRIAEDTEPSELSESDVDSGSEEDTHSDTVFQDKVEKFMEYFREKNDELFADRCEEYLNHIDSDDITISETSGSQSLPVMTSHSNSGRRRTIQPGESLSGAELELLRKVAAKAISPETQKILIESHKKDMDPEPKLIERELLKMIDSPKTEEICKKYKITKEKYTQKQILTRKLSKEISSSQTQLKELINLCIAKERLIDDLTKAMSQNTQNKSYDKNSDSNFVEQDTVKEIKRHEINLKTYKKQIDQIKRQIKKDEKRKNTLDVELVKDKLKLDDLSDTSIEVKDKKVNSLKHFTNRITQLDSILKEKTNDLASSEHSKEKEVILRKEIKNLRKTRECLHDQRCSLGHKRKIYKSLSDSEERKLLECEEAIEAIDTAIEYKNNLICGKSPSASLSDSFDNKDSRSRGEQMLMARLDKLSHDEIKTLLYRYFQKVVDLRGACAALEAGVAAASEEATIWRARAAAAWRHAQRVRSHAHTRHFQSFHRCLDGGNPERALSLGMTTDSETSDDAMRLVDRMKQLARCNPPPIIPSQNLRQLMPATNLPVAKVTKEKNKLVIVQQSKKH

Summary

Similarity
Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
Uniprot
A0A2A4JQI8   A0A2H1X2H9   A0A194R0G4   A0A194PI97   A0A212FL45   A0A0L7K5K0   + More
H9JLI2   A0A1A9WR33  
Pubmed
26354079    22118469    26227816    19121390   
EMBL
NWSH01000781    PCG74261.1    ODYU01012935    SOQ59477.1    KQ460883    KPJ11192.1    + More
KQ459603    KPI92768.1    AGBW02007871    OWR54457.1    JTDY01010588    KOB58164.1    BABH01005703    BABH01005704   
Proteomes
UP000218220    UP000053240    UP000053268    UP000007151    UP000037510    UP000005204    + More
UP000091820   
PRIDE
H9JLI2   
Pfam
PF00225   Kinesin
Interpro
IPR027417   P-loop_NTPase        + More
IPR036961   Kinesin_motor_dom_sf       
IPR027640   Kinesin-like_fam       
IPR001752   Kinesin_motor_dom       
SUPFAM
SSF52540   SSF52540       
Gene 3D
3.40.850.10    
ProteinModelPortal
A0A2A4JQI8   A0A2H1X2H9   A0A194R0G4   A0A194PI97   A0A212FL45   A0A0L7K5K0   + More
H9JLI2   A0A1A9WR33  
PDB
6MLR     E-value=3.95913e-20,     Score=245

Ontologies

KEGG
101744135    K06227 costal 2 | (RefSeq) kinesin-like protein costa
PATHWAY
04341    Hedgehog signaling pathway - fly - Bombyx mori (domestic silkworm)
GO
GO:0005524   GO:0003777   GO:0008017   GO:0007018   GO:0016491   GO:0004656   GO:0005783   GO:0016702   GO:0016295   GO:0016296  
PANTHER
PTHR24115  

Topology

Length:
943
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0646199999999999
Exp number, first 60 AAs:
0.00034
Total prob of N-in:
0.00284
outside
1  -  943
 
 

Population Genetic Test Statistics

Pi
210.203255
Theta
166.878814
Tajima's D
-1.377716
CLR
23.119433
CSRT
0.0786460676966152
Interpretation
Uncertain
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