Gene

KWMTBOMO07188  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA010388

Annotation

PREDICTED:_DDB1-_and_CUL4-associated_factor_13_[Papilio_polytes]

Location

Bomo_Chr12(-):7556214-7560686      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.208

CDS

ATGTCTAACGTAAAAATTAAAGTTATAAGTCGTAACCCAGAAGATTATTTGCGCGCTACGAAACGAGATATTCAGAAAATACCTCGCAACTATGACCCGAGCTTGCATCCACTAGAAGCACCCCGTGAATATGTGCGTGCTTTGAATGCTGTAAAATTAGAGAGGGTATTTGCCAAGCCCTTTATTGGTTGTTTAGATGGTCACAGAGATGGGGTTTCTACTATGGCCAAGCATCCTAGCCAACTAGCAGTTCTAGCTAGTGGAGCATTTGATGGTGAAGTACGTATTTGGGACTTAACTGTACGGAAGTGTACAAGAAATTTTGTTGCTCATGAGGGATGGGTGAGAGCTTTATGTTACAATCCAGATGGAAAGCATTTTATGAGTGTTGGTGATGATAAAACTATTAAAACGTGGAAAGCTGAAGCTGTCACAGAGGAAGATGAGGAACCCACTAATACGTTGCTAAGCATGTCAGTGGTGTCTGGTATAACACATCATAGAAACAAACCAATCTTTGCCACCTGTGGTGAACAATGTCAACTGTGGGAGAACACAAGAAATGAACCGATTAAAGTTTTTAAATGGGGCGTAGATAGCTTACATCATGTTTCATTTAACCAGGTTGAATACAATTTGTTGGCTTCTTGTGCTAGTGACAGAAGTATTATTTTATATGACTGCCGTGAATCTGGTCCTCTGAGGAAAGTTGTATTGGAGTTACGATCCAATGCACTCTCCTGGAACCCTATGGAAGCATTCATCTTTACAGTAGCTAATGAAGACTATAATTTGTACACATTTGATGTAAGGAGACTAAAAGAACCAGTGGCCATTCACATGGATCATACGTCTGCCGTGATTGATGTTGACTATGCGCCAACTGGCCGTGAATTTGTCGCGGGTAGCTATGACAAAACTATCAGAATATTCCAGAATGACAAAGGACACTCCCGAGATGTTTACCATACAAAAAGAATGCAGCGATTAACCTGCGTGAAATGGTCTCTAGATAATAAATATGTAATGAGTGGATCTGACGAAATGAATATAAGAATGTGGAAGGCCAGGGCATCTGAAAAACTTGGTGTGCTTAAGCCTCGTGAAAGACAAGCTCTTAATTATGCGGAAGCCCTAAAGGAGAAGTTTGCGACGCATCCACAAGTGAAGCGTATCGCTCGTCACAGACACGTCCCTAAACACATACTGAATGCGCAGAAAGAACTACGAACTATCCGAGAGAAAACGAAGAGAAAAGAAGCAAATAGACGCGCCCACAGTAAAAAGGGGACAATACCGGTTGTTTCTGAGAAAAAGAGACATGTCGTTAAAGAAGACGAATGA

Protein

MSNVKIKVISRNPEDYLRATKRDIQKIPRNYDPSLHPLEAPREYVRALNAVKLERVFAKPFIGCLDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCTRNFVAHEGWVRALCYNPDGKHFMSVGDDKTIKTWKAEAVTEEDEEPTNTLLSMSVVSGITHHRNKPIFATCGEQCQLWENTRNEPIKVFKWGVDSLHHVSFNQVEYNLLASCASDRSIILYDCRESGPLRKVVLELRSNALSWNPMEAFIFTVANEDYNLYTFDVRRLKEPVAIHMDHTSAVIDVDYAPTGREFVAGSYDKTIRIFQNDKGHSRDVYHTKRMQRLTCVKWSLDNKYVMSGSDEMNIRMWKARASEKLGVLKPRERQALNYAEALKEKFATHPQVKRIARHRHVPKHILNAQKELRTIREKTKRKEANRRAHSKKGTIPVVSEKKRHVVKEDE

Similarity

Belongs to the peptidase C19 family.

Uniprot

H9JLI7   A0A194R5Q9   A0A194PHG8   A0A1E1WUS4   A0A2A4K0U9   A0A2H1V2I6   + More
S4NIF0   A0A212EWA7   A0A3S2NRT3   D6W8S8   A0A087ZVV4   A0A2A3EFY4   A0A1Y1MYC5   A0A154PNE6   A0A0M9A2B5   A0A067QK63   A0A232ETH7   A0A2J7RPA9   A0A0L7RKT4   A0A158NYH8   A0A0C9PZ86   A0A195F641   A0A151ITA1   A0A195AYM4   A0A0J7KX70   A0A026WMM6   F4WT05   U4UL95   E2BL45   A0A151WHN7   A0A195CXI0   A0A310SJU2   A0A1B6E184   N6U300   A0A1W4W599   E2A657   A0A1I8NZH6   E9JD02   T1PAL9   A0A0A1XIB0   A0A1I8MNH7   A0A0L0C3P9   A0A034WMV6   A0A1L8DH58   W8BYE1   B7P621   A0A0K8UQD1   B4N502   A0A1W4VAK8   A0A1S3K776   A0A1S3K6T0   B3M714   B4L147   A0A1B0D8J4   A0A1B0G441   B4PCF6   Q9VUN7   B4ITZ7   A0A1A9XDT6   A0A1B0B8F7   I3IU87   A0A0J9RVH1   B4HI79   B3NI21   A0A3B4F4W9   A0A3Q4GYU1   B4LH67   D3TRG9   A0A1A9WGK1   A0A3P8R7Z3   A0A3P9C237   A0A3Q4BQZ0   A0A3Q2VR09   A0A0M5IYR0   L7M7G5   A0A1J1IUH4   A0A087U3V3   A0A224Z3N5   A0A3Q1FFH1   A0A3Q0R1L5   A0A131Z4K8   H3AZV2   B4IZ12   T1H724   A0A3B5BHV8   W5MTA1   A0A3Q1CB57   A0A3Q3IXZ5   A0A3S2PVM0   A0A131XLL4   A0A023FXF9   J9JM86   A0A023GK62   B4GUC4   A0A3B3D4F2   A0A3P9JWE8   A0A0K8TR14   A0A1W5ARW2   A0A3Q2ZHD4   E9H698  

Pubmed

19121390    26354079    23622113    22118469    18362917    19820115    + More
28004739    24845553    28648823    21347285    24508170    30249741    21719571    23537049    20798317    21282665    25830018    25315136    26108605    25348373    24495485    17994087    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    25186727    22936249    20353571    25576852    28797301    26830274    9215903    28049606    29451363    17554307    26369729    21292972   

EMBL

BABH01005687    KQ460883    KPJ11201.1    KQ459603    KPI92757.1    GDQN01000284    + More
JAT90770.1    NWSH01000298    PCG77646.1    ODYU01000375    SOQ35053.1    GAIX01014099    JAA78461.1    AGBW02012025    OWR45782.1    RSAL01000003    RVE54745.1    KQ971312    EEZ98265.1    KZ288262    PBC30394.1    GEZM01021529    JAV88956.1    KQ435004    KZC13401.1    KQ435775    KOX74996.1    KK853353    KDR08204.1    NNAY01002275    OXU21653.1    NEVH01001462    PNF42659.1    KQ414570    KOC71346.1    ADTU01003883    GBYB01006823    JAG76590.1    KQ981768    KYN35938.1    KQ981029    KYN10187.1    KQ976701    KYM77296.1    LBMM01002404    KMQ94869.1    KK107151    QOIP01000003    EZA57285.1    RLU25170.1    GL888331    EGI62618.1    KB632375    ERL93872.1    GL448921    EFN83595.1    KQ983114    KYQ47334.1    KQ977220    KYN04849.1    KQ760538    OAD59999.1    GEDC01005612    JAS31686.1    APGK01051684    KB741201    ENN72947.1    GL437108    EFN71116.1    GL771866    EFZ09142.1    KA644963    AFP59592.1    GBXI01003178    JAD11114.1    JRES01001015    KNC26114.1    GAKP01002061    JAC56891.1    GFDF01008400    JAV05684.1    GAMC01002193    JAC04363.1    ABJB010458834    DS643501    EEC02043.1    GDHF01023422    JAI28892.1    CH964101    EDW79441.1    CH902618    EDV40879.1    CH933809    EDW18204.1    AJVK01027480    CCAG010006632    CM000159    EDW94866.1    AE014296    AY058590    AAF49638.2    AAL13819.1    CH891752    EDW99860.1    JXJN01009933    AERX01031290    AERX01031291    AERX01031292    CM002912    KMY99741.1    CH480815    EDW41575.1    CH954178    EDV52107.1    CH940647    EDW70580.1    EZ424021    ADD20297.1    CP012525    ALC44048.1    GACK01004798    JAA60236.1    CVRI01000057    CRL02193.1    KK118034    KFM72042.1    GFPF01013342    MAA24488.1    GEDV01002825    JAP85732.1    AFYH01111405    AFYH01111406    AFYH01111407    AFYH01111408    CH916366    EDV97720.1    AHAT01004778    CM012452    RVE62242.1    GEFH01001553    JAP67028.1    GBBL01001151    JAC26169.1    ABLF02037926    GBBM01001104    JAC34314.1    CH479191    EDW26207.1    GDAI01000796    JAI16807.1    GL732597    EFX72618.1   

Proteomes

UP000005204    UP000053240    UP000053268    UP000218220    UP000007151    UP000283053    + More
UP000007266    UP000005203    UP000242457    UP000076502    UP000053105    UP000027135    UP000215335    UP000235965    UP000053825    UP000005205    UP000078541    UP000078492    UP000078540    UP000036403    UP000053097    UP000279307    UP000007755    UP000030742    UP000008237    UP000075809    UP000078542    UP000019118    UP000192223    UP000000311    UP000095300    UP000095301    UP000037069    UP000001555    UP000007798    UP000192221    UP000085678    UP000007801    UP000009192    UP000092462    UP000092444    UP000002282    UP000000803    UP000092443    UP000092460    UP000005207    UP000001292    UP000008711    UP000261460    UP000261580    UP000008792    UP000091820    UP000265100    UP000265160    UP000261620    UP000264840    UP000092553    UP000183832    UP000054359    UP000257200    UP000261340    UP000008672    UP000001070    UP000015102    UP000261400    UP000018468    UP000257160    UP000261600    UP000007819    UP000008744    UP000261560    UP000265180    UP000192224    UP000264800    UP000000305   

PRIDE

H9JLI7    B7P621    Q9VUN7   

Pfam

PF00400   WD40        + More
PF04158   Sof1
PF08662   eIF2A
PF08755   YccV-like
PF00443   UCH
PF04379   DUF525
PF00085   Thioredoxin

Interpro

IPR036322   WD40_repeat_dom_sf        + More
IPR019775   WD40_repeat_CS       
IPR001680   WD40_repeat       
IPR017986   WD40_repeat_dom       
IPR007287   Sof1       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR013979   TIF_beta_prop-like       
IPR020472   G-protein_beta_WD-40_rep       
IPR036623   Hemimethylated_DNA-bd_sf       
IPR011722   Hemimethylated_DNA-bd_dom       
IPR001394   Peptidase_C19_UCH       
IPR036249   Thioredoxin-like_sf       
IPR018200   USP_CS       
IPR038765   Papain-like_cys_pep_sf       
IPR013766   Thioredoxin_domain       
IPR007474   ApaG_domain       
IPR028889   USP_dom       
IPR036767   ApaG_sf       

SUPFAM

SSF50978   SSF50978        + More
SSF52833   SSF52833       
SSF54001   SSF54001       
SSF141255   SSF141255       
SSF110069   SSF110069       

Gene 3D

2.130.10.10     2.60.40.1470    

ProteinModelPortal

H9JLI7   A0A194R5Q9   A0A194PHG8   A0A1E1WUS4   A0A2A4K0U9   A0A2H1V2I6   + More
S4NIF0   A0A212EWA7   A0A3S2NRT3   D6W8S8   A0A087ZVV4   A0A2A3EFY4   A0A1Y1MYC5   A0A154PNE6   A0A0M9A2B5   A0A067QK63   A0A232ETH7   A0A2J7RPA9   A0A0L7RKT4   A0A158NYH8   A0A0C9PZ86   A0A195F641   A0A151ITA1   A0A195AYM4   A0A0J7KX70   A0A026WMM6   F4WT05   U4UL95   E2BL45   A0A151WHN7   A0A195CXI0   A0A310SJU2   A0A1B6E184   N6U300   A0A1W4W599   E2A657   A0A1I8NZH6   E9JD02   T1PAL9   A0A0A1XIB0   A0A1I8MNH7   A0A0L0C3P9   A0A034WMV6   A0A1L8DH58   W8BYE1   B7P621   A0A0K8UQD1   B4N502   A0A1W4VAK8   A0A1S3K776   A0A1S3K6T0   B3M714   B4L147   A0A1B0D8J4   A0A1B0G441   B4PCF6   Q9VUN7   B4ITZ7   A0A1A9XDT6   A0A1B0B8F7   I3IU87   A0A0J9RVH1   B4HI79   B3NI21   A0A3B4F4W9   A0A3Q4GYU1   B4LH67   D3TRG9   A0A1A9WGK1   A0A3P8R7Z3   A0A3P9C237   A0A3Q4BQZ0   A0A3Q2VR09   A0A0M5IYR0   L7M7G5   A0A1J1IUH4   A0A087U3V3   A0A224Z3N5   A0A3Q1FFH1   A0A3Q0R1L5   A0A131Z4K8   H3AZV2   B4IZ12   T1H724   A0A3B5BHV8   W5MTA1   A0A3Q1CB57   A0A3Q3IXZ5   A0A3S2PVM0   A0A131XLL4   A0A023FXF9   J9JM86   A0A023GK62   B4GUC4   A0A3B3D4F2   A0A3P9JWE8   A0A0K8TR14   A0A1W5ARW2   A0A3Q2ZHD4   E9H698  

PDB

5WLC     E-value=2.51309e-105,     Score=977

KEGG

101743321    K11806 WD repeat and SOF domain-containing protein 1 | (RefSeq) DDB1- and CUL4-associated factor 13

GO

GO:0080008   GO:0005730   GO:0000462   GO:0032040   GO:0004402   GO:0016021   GO:0003677   GO:0036459   GO:0005623   GO:0016579   GO:0045454   GO:0006511   GO:0005515   GO:0008270   GO:0000166   GO:0031032   GO:0030060   GO:0019752   GO:0016491   GO:0016295   GO:0016296  

Length:

447

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.000800000000000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00997

outside

1  -  447

 

 

Pi

140.834486

Theta

120.250156

Tajima's D

0.701113

CLR

0.029311

CSRT

0.572171391430428

Interpretation

Uncertain