SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO07183
Annotation
PREDICTED:_serine/arginine_repetitive_matrix_protein_1-like?_partial_[Bombyx_mori]
Location
Bomo_Chr12(+):7227202-7233882      View in EpiBrowser
Location in the cell
Mitochondrial   Reliability : 1.187 Nuclear   Reliability : 1.291
 

Sequence

CDS
ATGGGTGACGGAGGGTACCTCCCGCTCCGCGGGGGAGAATCCCTCCGTGCGGTCGAGCGATCGGCCGCACGCTGCCCCACCGTTTCTGGGGGGGGCAAACATTGCCACGACGAAGGGGGCGACAGCACGGGTCGCGTAAGGGACAGAGTCCCCACCGTGCGCCTCGAACGCTGCGAGAGCCTGATCTCGCTCTACTCGGCGCGGAGCTCCGCAAGGGGCGACGCGTCCAGTGGGCGGGAGACGCCAGCGCTGTTCGTGGACAGTGCTCGACAGCGCACTAGACGGAAGAGGAAGTCGGCTCGTCAGCCGGCATCTGTCCCTCCGTCCGACTCCTCGGAAGGAGAGCCTACCAGCGCCAAGTACTTGGCGTTGGCGGAAGGGCCGGCGACTGCTGCGGCGTCGCCCGCCACCGGCTTTGACAAAAGAGCATCTTGCGGACTGGATGCTGCCTCCTCGGCGCAGTCCAGGGCCGCCTGCCGTGAGGCACATAAACGGTTGGCAACGGTTGGAGAGGTCGAGCGACTGGAGCGCTCCCTGACAGAGGTGGGTCCCTATGACCCCCTCCGTAGATATGGCATCAGCCAAAAAATTGTTTCTACGGTGGCGACGAAGTCGAGTGCAGGCCTAAAGGGCGACTATGTGCGGGCCCTAAAATCGGCCGCCTCCTCCATGGAGGAAGTAATGGTGGAGGTGTTGGAGCGCACCAAGGATGGGGAGACGGAAGGTCTGCGCAAATCGGTGGACCTGCTGCACGCCCGACTGGCCCAAATCAGCGCGGAGAACGGTCATCTTCGCGCTGAGAACGGGCAGATGAAGGTGGACTTGGCCGAGTTGCGCACACTGGTCAACGACCTAATCGAGAAGCAGTGCAACTCGGCCCCTGTACCTACTCCGCTCGAGACCGAAGAGGCCAATGAGGCCGAGGAGCTGAGGCGGCAGCTCCTAATACAGGAGGCACGTAGCTCCAACGTGGAGCGCGCGAGACCGCCCCTCGCCCATGAAGCGAAAAGCAGTGCGCCTGTGCCGGCGCCCCGCAGGAAGGTGCAGCCCAGCCAGAAGATAAAAACAACACCCGCGCGAACTTCCGCTGCGGCTGGACCTACACCTGCGGCTGCGGGGGTGCCGGCACCCACGGCCCCTACAAGAAAACCGGCGTCCGCTCCTGCCCCGCCCCAGCCTGCGAAAGCAGGGCCCGGCAGGAGCCGGACAAAGAAGAAGGGAGGCGTCAACGCCGCCAAACCGGCACTGACCCCCCAGCCCCGCCCACTGCCCCCCGCCCCGGCCAACATGGATGAGGCCTGGACGACGGTAGTGCGGCGTGGGCCCAAAAAGGTGGCGGCGCCTCCTGCGCCACGCCCCAAGCCCACCCCTGCGGCCGCCGCTCCCCGCCAAGAGGGTCGAGCGGAGCCGAGGGGCCGAACTGGTAGAAGGAGGCCGCGCGCCCCGCGGTCGGCTGCAGTGGTAGTGGAGCTGCTGCCGGCCGGCAAAGAAAAGGGCATCACCTACCACGAGGTGATGACCCAGGCGCGTGGCGGCGTGAATGTGGACGCCCTCGGCGTGGAGGGGGGCATCAAGGTCCGGCAGACGGCCAACGGGGCTCGTCTTATAGAGTGCCCCGGCCCCAACACAAACGCCGCGGCCGAAAAATTGGCGGCCCGGCTGAGGGAGATCCTGCCGGACCCCGAGGTGGTGCGCATCGCGCGGCCCGTGAAGATGGGGGAAGTAAAAATCACGGGCCTCGACGAGTGCGCCACGAAAGAGGAGGTCGCCGCGGCCATCGCGTCGCAGGGCAACTGCGCCCTCGCCGACGTCAAAGTCGGGGAGCTCCGGGCGACGTACTCCGGAACCCGGACGGCGTGGGCGCGTTGCCCGGTAGTAACGGCGAACCTCCTGGCCACCCCTCCGCAGGGTCGGCCTTCGGACAGCCCTGGATGGCTGCGCGTGGGCTGGGTAGTGGCCCACGTGCAACTGCAGGAGAGCAGGCCGTGGCGTTGTCTTCGGTGCTTCGGCACCGGCCACGGCCTCGCCAAGTGCCCCTCGACCGTGGACCGCAGCGATCTGTGTTTCCGCTGCGGCCAACCGGGGCACAAGGCAGCCTCCTGCACCACAGCCGCGCCGCACTGCGTCTTGTGCGACGCGGCTAAAAGGAAGGCCGACCACCGGGCCGGGGGCCCGGCGTGTAAGTCCGCCCCCTCCTCTACCAAAACGAGGAGGGGCGGCAAGAAAAATAAAAAGAAGGAGAGGCCGGCTGCAATAAGGGCAGCCGGCGAGTCAGTTCCCGCCGCGGCACCAGACGAGCCGCAGGGCGGGACAGACGAGGGAGCGATGGACGATCTCCTCGTCCACACCATGGCGGAGTGGTCAATCGACGTCGCTGTCGCCGCGGAGCCGTACTTCGTCCCCACCGACCAGGACTGCTGGATGGGGGACGTCGACGGCTCCGTGGCCATAGCACTAAGACAGTCCGCGGCGTTACCCCCCTTGGATATGGTGGCCAGGGGACCCGGGTGGGCCTTGAAACGAATGAACAAGGAGTTGCTGATGGAGGCGGCCGCTGTTGCTGCGTGGGCGCCAAAACCCGCGCGGCTCGCGGACGTGGATGCGGAGGTCGACTGGTTCCGGGGCACCATGGCAAACATCTGTGATGCCGCCATGCCCCGGGTCGGCCCCGAGCACCACGTGGGGACGGCGCTGCAGCTGGCCATCGGCGAGGCCAAGAAGCAGAGCATGAAGACTCTCCTGGAGTCGCTCGACGAAGATCCCTGGGGGCGCCCATACAAGATGGTTCGCAGGAAACTGCAGCCGTGGGCGCTCCCGGTGACCGAGCGGCTCCAGCCTCGGCAGCTGCGGGAAATAGTTTCTGCGCTTTTCCCGCCGGCAGCGGGGGGGGACTTTGAGCCCCCCCAGATGGACGCCACGTGGGGCACGCCTCCGCGTCGCCCCAGCGTTCCCGCTGCCGAGGAGCCCCCTCCCCCTATCACGGGGGCGGAGATCCATGCGGCCGTGTCCAGAATGAGAGCGAAGGACGCGGCCCCCGGCCCTGACGGCGTTCACGGCCGGGTCTGGAGCTTGGCCTTCGAGGCCCTAGGGGACCGGCTCGGGGGGCTTTTCGAAGCGTGCCTCGAGTCGGGACGGTTCCCGTCGAAATGGAAGACGGGCAGACTGGTCCTTCTGCGGAAGGACGGGCGCCCCGCGGACTCACCCGCGGGCTATCGCCCCATCGTGTTGCTGGACGAAGCGGGCAAGATGCTCGAGAGAATCGTCGCGGCCCGCATCGTCCGGCACCTGACCGAGACGGGTCCCGATCTTTCGGCGGAGCAATACGGCTTCAGGGAGGGCCGCTCTACGATCGACGCGATTCTGCGCGTGAGGGCCCTCTCCGACGAAGCCGTATCCCGGGGCGGGGTGGCGTTGGCGTTATCCTTAGATGTAAGGAACGCCTTCAACACCCTGCCCTGGTCGGTGATCGCGGGGGCGCTGGAGTATCACGGCGTCCCCGCATACCTCCGCCGACTGATCGGCTCCTACCTCGAGGGCAGGTCGATCCAGTGCATCGGACACGGTGGGGCGATGTACCGCTTCCCCGTCGAGCGCGGTGTTCCGCAGGGGTCCGTCCTGGGCCCCCTGCTGTGGAACATCGGCTACGACTGGGTCCTGCGGGGCGTCATACGGGGTCCCCTCCCCGGACTGAGCGTCATTTGCTACGCTGACGACACTCTGGTCGTGGCTCCGGGGAGGGACTACCGGGAGTCTGCCCGTCTGGCGTGCGCAGGCGTGGCACACGTCGTCACTAGGATCCGACGGTTGGGGCTCGAGGTGGCGCTCGACAAAACCCAGGCCCTGTTATTTCACGGGCCGGGACGAGCGCCGCCTCTGGGTGCCCACCTCGTGATCGGAGGCGTCCGCGTCGGGGTCGGGGTGACTGGTCTTCGGTACCTCGGCCTCGAACTGGACGGTCGGTGGAACTTCCGCGCTCACTTTGCGAAGTTGGGCCCTCGATTGATGGCGACGGCCGGCTCTTTGAGCCGGCTGCTTCCAAACGTCGGGGGTCCCGATCAGGTGGCGCGCCGCCTCTACATGGGGGTGGTGCGGTCGATGGCACTATACGGTGCGCCCGTATGGTGCCACGCCCTGACCCGCCAGAACGTCGCCGCGCTGCGACGTCCGCAGCGCGCGATCGCGGTCAGGGCGATCCGAGGATACCGCACCGTCTCCTTCGAGGCGGCGTGCTTGCTCGCCGGGGCGCCACCCTGGGACCTGGAGGCGGAGGCGCTCGCTGCCGATTACCGGTGGCGTAGCGACCTCCGCTCTAGGGGGAAGGGGGCCCCAGCGAAGATAGCCGGAAGGGAACCGACGGCGCAGTGCCACCACTGCGCGGACCGCGACGAGGAAGACACAGCGGAACATACATTGGCGCGTTGCTCTGGATTCGACGAGCAACGCGCCGCCCTCGTCGCGGTCATAGGAGAGGACCTCTCGCTGCCGCGCGTCGTGGCTACGATGCTCGGCAGCGACGCGTCCTGGAAGGCGATGCTCGACTTCTGCGAGTCCACCATCTCGCAGAAGGAGGCGGCGGAGCGAGAGAGGGAGAGCTCTTCCCTTTCCGCACCGATCCGTCGCCGTCGAGCCGGGGGCCGGAGGCGGGAATACGCCCGTACGTCCCGGCCCCTGTAG
Protein
MGDGGYLPLRGGESLRAVERSAARCPTVSGGGKHCHDEGGDSTGRVRDRVPTVRLERCESLISLYSARSSARGDASSGRETPALFVDSARQRTRRKRKSARQPASVPPSDSSEGEPTSAKYLALAEGPATAAASPATGFDKRASCGLDAASSAQSRAACREAHKRLATVGEVERLERSLTEVGPYDPLRRYGISQKIVSTVATKSSAGLKGDYVRALKSAASSMEEVMVEVLERTKDGETEGLRKSVDLLHARLAQISAENGHLRAENGQMKVDLAELRTLVNDLIEKQCNSAPVPTPLETEEANEAEELRRQLLIQEARSSNVERARPPLAHEAKSSAPVPAPRRKVQPSQKIKTTPARTSAAAGPTPAAAGVPAPTAPTRKPASAPAPPQPAKAGPGRSRTKKKGGVNAAKPALTPQPRPLPPAPANMDEAWTTVVRRGPKKVAAPPAPRPKPTPAAAAPRQEGRAEPRGRTGRRRPRAPRSAAVVVELLPAGKEKGITYHEVMTQARGGVNVDALGVEGGIKVRQTANGARLIECPGPNTNAAAEKLAARLREILPDPEVVRIARPVKMGEVKITGLDECATKEEVAAAIASQGNCALADVKVGELRATYSGTRTAWARCPVVTANLLATPPQGRPSDSPGWLRVGWVVAHVQLQESRPWRCLRCFGTGHGLAKCPSTVDRSDLCFRCGQPGHKAASCTTAAPHCVLCDAAKRKADHRAGGPACKSAPSSTKTRRGGKKNKKKERPAAIRAAGESVPAAAPDEPQGGTDEGAMDDLLVHTMAEWSIDVAVAAEPYFVPTDQDCWMGDVDGSVAIALRQSAALPPLDMVARGPGWALKRMNKELLMEAAAVAAWAPKPARLADVDAEVDWFRGTMANICDAAMPRVGPEHHVGTALQLAIGEAKKQSMKTLLESLDEDPWGRPYKMVRRKLQPWALPVTERLQPRQLREIVSALFPPAAGGDFEPPQMDATWGTPPRRPSVPAAEEPPPPITGAEIHAAVSRMRAKDAAPGPDGVHGRVWSLAFEALGDRLGGLFEACLESGRFPSKWKTGRLVLLRKDGRPADSPAGYRPIVLLDEAGKMLERIVAARIVRHLTETGPDLSAEQYGFREGRSTIDAILRVRALSDEAVSRGGVALALSLDVRNAFNTLPWSVIAGALEYHGVPAYLRRLIGSYLEGRSIQCIGHGGAMYRFPVERGVPQGSVLGPLLWNIGYDWVLRGVIRGPLPGLSVICYADDTLVVAPGRDYRESARLACAGVAHVVTRIRRLGLEVALDKTQALLFHGPGRAPPLGAHLVIGGVRVGVGVTGLRYLGLELDGRWNFRAHFAKLGPRLMATAGSLSRLLPNVGGPDQVARRLYMGVVRSMALYGAPVWCHALTRQNVAALRRPQRAIAVRAIRGYRTVSFEAACLLAGAPPWDLEAEALAADYRWRSDLRSRGKGAPAKIAGREPTAQCHHCADRDEEDTAEHTLARCSGFDEQRAALVAVIGEDLSLPRVVATMLGSDASWKAMLDFCESTISQKEAAERERESSSLSAPIRRRRAGGRRREYARTSRPL

Summary

Uniprot
NA  
ProteinModelPortal
NA  
PDB
6AR3     E-value=0.0001297,     Score=113

Ontologies

KEGG
105842677    no KO assigned | (RefSeq) serine/arginine repetitive matrix protein 1-like
GO
GO:0003676   GO:0008270   GO:0000166   GO:0005515   GO:0031032   GO:0030060   GO:0019752   GO:0016491   GO:0016295   GO:0016296  

Topology

Length:
1557
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.32264
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00000
outside
1  -  1557
 
 

Population Genetic Test Statistics

Pi
138.765547
Theta
16.583537
Tajima's D
0
CLR
51.78639
CSRT
0.377331133443328
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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