SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO07176  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA010396
Annotation
uncharacterized_protein_LOC106123913_[Papilio_xuthus]
Location in the cell
Nuclear   Reliability : 2.927
 

Sequence

CDS
ATGTCACGCTATGGTGACTGCAAAGTTTATGTTGGAGATTTGGGGAATAATGCTAGTAAACCTGAACTTGAAGATGCCTTTTCATATTATGGTCCACTGAGGAATGTGTGGGTTGCAAGAAATCCTCCAGGCTTCGCATTTGTTGAATTCGAAGATCCACGGGATGCTGAAGACGCAGTACGTGGTTTGGATGGACGGACGATTTGCGGTCGTAGAGCCCGTGTAGAAATGTCTAATGGGGGTCGCGGTTATGGCAGCCGGGGTCCACCACCTCGTTCGCGTCTGCCTCCTCGGCCGTATGATGATCGTTGTTACGACTGCGGCGACAGAGGACACTACGCTCGTGACTGTTCACGTCGTCGGCGACGCAGGTTATCATTGGGTTGTGCGCCGAGAACGAACTCGTCAGTGTCTGCACTTCTTATTATCTGCGCTACGTAG
Protein
MSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAFVEFEDPRDAEDAVRGLDGRTICGRRARVEMSNGGRGYGSRGPPPRSRLPPRPYDDRCYDCGDRGHYARDCSRRRRRRLSLGCAPRTNSSVSALLIICAT

Summary

EMBL
NWSH01000345    PCG77243.1    GDQN01002899    JAT88155.1    AK401477    BAM18099.1    + More
KQ460883    KPJ11210.1    BABH01005659    AGBW02013442    OWR43431.1    PCG77245.1    PCG77244.1    JTDY01008585    KOB64499.1    DQ443394    DQ497207    ABF51483.1    ABF55972.2    GAIX01005549    JAA87011.1    KQ459603    KPI92747.1    GAIX01005906    JAA86654.1    GFDF01008870    JAV05214.1    GEZM01088780    GEZM01088779    GEZM01088770    GEZM01088769    GEZM01088764    GEZM01088762    JAV57932.1    GEZM01088783    GEZM01088781    GEZM01088773    GEZM01088765    JAV57922.1    APGK01029461    APGK01029462    APGK01029463    KB740735    ENN79141.1    AJVK01008748    KQ971372    EFA09429.1    GECZ01022531    JAS47238.1    GECU01028450    JAS79256.1    GL448558    EFN84192.1    ABLF02027459    GEBQ01020330    JAT19647.1    DS235221    EEB13469.1    GFXV01000187    MBW11992.1    GGMR01019370    MBY31989.1    NNAY01001755    OXU23021.1    KZ288238    PBC31334.1    GL438827    EFN68328.1    UFQT01000770    SSX27106.1    LBMM01000694    KMQ97725.1    QOIP01000001    RLU26434.1    KQ760832    OAD58886.1    KQ414579    KOC71109.1    FJ774776    ACY66497.1    GBYB01003122    JAG72889.1    GBHO01038779    GBRD01008394    JAG04825.1    JAG57427.1    GBHO01038782    JAG04822.1    GBHO01009401    GBRD01006452    JAG34203.1    JAG59369.1    GBHO01038780    JAG04824.1    GBHO01009399    GBRD01006451    JAG34205.1    JAG59370.1    GBYB01003123    JAG72890.1    GBHO01038781    JAG04823.1    KC571978    AGM32477.1    AM950284    CAQ34906.1    GEMB01007011    JAR96355.1    KQ982796    KYQ50593.1    KQ976687    KYM78145.1    ADTU01013114    ADTU01013115    KQ981064    KYN09842.1    KQ981607    KYN39417.1    GFTR01002212    JAW14214.1    GDKW01003586    JAI53009.1    QCYY01000931    ROT81713.1    AXCM01013990    DS235271    EEB14140.1    GL767538    EFZ13615.1    GECL01002381    JAP03743.1    GBBI01002295    JAC16417.1    AXCN02000773    KQ977477    KYN02486.1    ACPB03010532    GDIP01048425    JAM55290.1    GDIQ01057024    JAN37713.1    GDIP01046826    JAM56889.1    CVRI01000038    CRK94404.1    GDIQ01209919    JAK41806.1    GDIP01214350    JAJ09052.1    GDIQ01074665    JAN20072.1    GDIQ01223512    JAK28213.1    GBBL01000679    JAC26641.1    GDIQ01119052    GDIP01056573    JAL32674.1    JAM47142.1    MWRG01006646    PRD28816.1    GGFL01003423    MBW67601.1    GDIP01097817    JAM05898.1    GFPF01005933    MAA17079.1    GFAC01005988    JAT93200.1    GANP01001661    JAB82807.1    GDIP01136060    JAL67654.1    GFPF01012045    MAA23191.1    GEDV01003812    JAP84745.1   
Pfam
PF00076   RRM_1        + More
PF00098   zf-CCHC
PF16454   PI3K_P85_iSH2
PF00017   SH2
PF12796   Ank_2
Interpro
IPR000504   RRM_dom        + More
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR001878   Znf_CCHC       
IPR035979   RBD_domain_sf       
IPR035022   PI3kinase_P85_nSH2       
IPR000980   SH2       
IPR032498   PI3K_P85_iSH2       
IPR036860   SH2_dom_sf       
IPR036875   Znf_CCHC_sf       
IPR036770   Ankyrin_rpt-contain_sf       
IPR020683   Ankyrin_rpt-contain_dom       
IPR002110   Ankyrin_rpt       
SUPFAM
SSF54928   SSF54928        + More
SSF55550   SSF55550       
SSF57756   SSF57756       
SSF48403   SSF48403       
Gene 3D
PDB
2I38     E-value=6.239e-31,     Score=328

Ontologies

Topology

Length:
146
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.26863
Exp number, first 60 AAs:
0
Total prob of N-in:
0.43444
outside
1  -  146
 
 

Population Genetic Test Statistics

Pi
120.336172
Theta
146.647073
Tajima's D
-0.72057
CLR
0.115381
CSRT
0.192340382980851
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Peptides ×
Source Sequence Identity Evalue
28556443 NPPGFAFVEFEDPR 100.00 7e-13
26822097 VPIIGAIPIEPR 100.00 6e-09
26280517 NPDCIIPIK 100.00 6e-09
28467696 NPPAPQPAVHIQGQEPITSTMIAAAPIQEQK 100.00 6e-09
26822097 VYVGNIGTNASK 95.24 1e-08
26280517 NPPDATITMDGK 95.24 1e-08
26822097 NPPGFAFVEFEDPRDAEDSVR 100.00 4e-04
26280517 NPAITDVADKIK 100.00 4e-04
28556443 NPPGFAFVEFEDPR 100.00 4e-04
28556443 NPPGFAFVEFEDPR 100.00 4e-04
28556443 VYVGNLGTNASK 100.00 4e-04
28556443 NPPGFAFVEFEDPR 100.00 4e-04
28556443 VYVGDLGNNASKPELEDAFSYYGPLR 100.00 4e-04
28556443 TGYTLDVTTGQR 100.00 4e-04
28556443 NPPGFAFVEFEDPR 100.00 0.003
28556443 NPPGFAFVEFEDPR 100.00 0.003
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