SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO07172
Pre Gene Modal
BGIBMGA010560
Annotation
PREDICTED:_protein_retinal_degeneration_B_[Amyelois_transitella]
Location in the cell
Nuclear   Reliability : 2.83
 

Sequence

CDS
ATGCTTATTAAAGAATACAGAATACCGCTACCACTCACGGTTGAAGAATACAGAATAGCACAACTTTATATGATTGCAAAGAAAAGTAGGGAAGAAAGCTCTGGTGAAGGAAGTGGTGTAGAAATTTTAGTCAACGAACCATATGAAGATGGGCCAGGTGGCAAAGGTCAGTACACTCAAAAAATATACCATGTTGGTAGCCATTTACCAGGTTGGTTTAAGAGTCTCCTCCCAAAATCTGCATTAACAGTATCTGAGGAAGCTTGGAATGCTTATCCTTACACAAAAACTAGGTACACATGTCCATTTGTTGAAAAATTTTCACTGGAAATTGAAACTTACTATTATGCTGACAATGGCCACCAAGAAAATGTATTTGACCTTTCTGGGAGTGACTTAAAGAACAGAATAGTTGATGTTATTGATGTTGTTAAAGATCAACTGTATGGTACTGATTACATAAAGGAAGAGGATCCAAAATTATTTATTTCACAGAAGTGTAATCGAGGTCCTTTGTCTGATAACTGGTTAGAAGAGTATTGGACAGAGGTACAAGGACAGCCTCAGCCATTAGCTAATGGAAAATCTCTCATGTGTGCCTATAAATTATGTAGAGTAGAATTCAGGTATTGGGGCATGCAAACAAAATTGGAAAAATTTATTCATGATGTTGCATTAAGGAAAACTATGTTGCGAGCTCATAGACAAGCCTGGGCTTGGCAAGATGAATGGCATGGTCTAACAATGGATGATATTAGAGAAATTGAAAGACAGACCCAATTGGCTCTACAGAAAAAAATGTGTGGTGATTCACAGGGTGAGGAACAAGATGTATCAGATGAAAATTCTAAATCCCTTGCAGCTACAATGAGTAGCTTAGAAAAAAATGAAGAATTGACAACCCCTTTGACAAACAAGAAAAATCATAATGAAAAACGCCTTCAAAAACATTTAAGTCCAGAGATTACTCCTCCTTCAGATCGTAAATCAACATCAAAGTCGAATCTCAGATCTTCATCCTCTGGCTCAATAAAAAGTTTGCAGGCTCAAGCTGCAAACTGGCGAATGGAAACACTTGTCAGAGAATCAGAAACAGAAACGGGGTCAGAAGATGAATTTTATGATTGTGAATCTTCTTTTAACAAATGGTCTTCTATGTGCTCTCTTGATGAAGCTGATATTGATATTTCACCCATTCAAGGTGATCTAGGAACTCAAGATAGCATTTTTAATCCTTCTTTCTTAAAACGTGTTACTTCTGAGAGAGGATCTCGGAGAGTAGTAACTTTACAAAGCCACCACAGTGTTGATGGATGTCCTGACACACCAGAACATGGCTCATGCGCTACTACCGTATTGATACTAGTATTTCATGCAGGAAGTGTACTAGACGCAAATGTTGACATGACAGCTAAAAAATCTGATGTTACTACCTTTAAAGGAGCTTTTGAATCAGTAATGCGACAACATTATCCAACTTTAGTTGGACATGTTATTATAAAATTAGTATCTTGTCCTTCCATATGCACTGAATCACTTGGAATATTATCAACATTAAGCCCTTATAGTTTTGATTGTTCTCCATCTACTGTTGAAACACCATCACTAACTAATGATCTTATACCTATTGGTGCTATACCTCTAATAGCCACAACTTGTCCCGAATATCATGAGTCTGTTACAAAAACCATTAACTCAGCTAATGCTGTATTTAACGAGTTTATTAAATCTGAGGATGGAAAAGGTTTCAATGGTCAAGTTTGTATTGTGGGCGATAGTATGGGGTCTGTGCTGGCTTACGACGCACTTGTTAGAAGTTTCCAGTATAACTCACGACACGATAGCGAAAATAGTATATTAGATACTGAAATTACGATTCCAAATGATCCCTTAGATCAACAATATCTAAACAAATCTCATTTACAAGCGCCTACGCCGCGAAGGCGATCGTCTTCTACCAGCGAAAATCAAATAAAATTCGAATTCGAAGTCAGTGATTTTTTTACTTTTGGTAGTCCATTATCATTGATTTTAGCTTCTAGGAAAGTATCAGATGACAGAAGTCGAGATATTACAAAACCACCGGTTCAGCAGGTTTACAATTTATTTCACCCAACTGATCCAGTTGCTTCAAGATTAGAACCATTACTATCAGCAAGATTCACAAATTTGCCCCCCATAAATGTTGCTAGATATACGAAGTATCCATTAGGAAATGGTCAGCCTTATCATTTGATGGAATTAATACAAAGTCATCCTCAATTGTTTGGTGACCATTTACAAATGCCACCTACACCAATTTTACGTAGACTCTCTGAAGCGTCTGTACAAAGCACAGTTAGTGGTTTAGTTGATAATATTCCTTTGTTAACTATGAATGCTTTACAGCAGAAATGGTGGGGTTCTAAACGCTTAGATTACGCCTTATATTGTCCTGAAGGCTTAACCAACTTCCCCACGAATGCTCTTCCTCATCTATTTCATGCAAGTTACTGGGAAAGTTACGACGTTATAGCTTTCATATTACGACAGATCGGTCATTTTGATTTAGCTTTGTATGGACATTCAGATGATAAGGACTGCTCTATGTTTAAACCAGGCCAAGAAAGAGAAAAATGGATGAGAAAGAGAACATCAGTTAAATTAAAAAATGTCGCCGCAAATCATAGAGCCAATGATGTAATAGTGAAAGAAGGTTCTTCGCAAGTTTTCGTTGCTCGTTTTATGTATGGACCTTTGGACATGATAACTCTAACAGGAGAAAAGGTTGATATATATATGATGAAAGACCCACCAGCAGGTGAATGGACACTTTTATCAACTGTCGTGACAGATAAAACGGGAAGAATCTCTTATACATTACCGGAGCGTCAAAGTGTTGGTTGTGGTATTTATCCTGTCAAAGCGGTTGTTAGAGGTGATCACACTAGTTGTAATTTTCACTTAGCTGTTGTTCCACCTCAAACCGAATGCGTTGTTTTTAGTATTGACGGTTCTTTTACCGCTAGCGTTTCTGTAACTGGACGCGACCCAAAAGTAAGAGCTGGTGCAGTTGATGTTGTTCGTTTTTGGCAAGATTTGGGCTATCTCATTCTGTATATTACTGGTAGACCTGATATGCAACAAAGGAAAGTAATATCCTGGTTAGCAGAACACAACTTCCCCCATGGCTTAGTCTTTTTCTCGGACGGATTTTCAACAGACCCCTTGGGACATAAGGCCGCACATTTGAACGGACTTATTAACGATCATGGCATAATTCTACATGCTGCGTACGGTTCGGGAAAAGACATAACGGTCTATAACAATTGTGGTTTGTCTCCTAGACAAATTTATGCCATTGGTCGCATTGGCAAGAAATACAGCAACATGGCTACTACTTTAAGTGATGGATACGCTTCACATTTGGCAGATTTGAAACAGCCTGGGGCAATTCGCCCTGCTAGAGGTAATGCCCGTCTTCTCGTCCCTCGTCGATTGTTAGCTCCGGTTACAAATGCACCTGCTTCCCGTGGTCGCCGTTAG
Protein
MLIKEYRIPLPLTVEEYRIAQLYMIAKKSREESSGEGSGVEILVNEPYEDGPGGKGQYTQKIYHVGSHLPGWFKSLLPKSALTVSEEAWNAYPYTKTRYTCPFVEKFSLEIETYYYADNGHQENVFDLSGSDLKNRIVDVIDVVKDQLYGTDYIKEEDPKLFISQKCNRGPLSDNWLEEYWTEVQGQPQPLANGKSLMCAYKLCRVEFRYWGMQTKLEKFIHDVALRKTMLRAHRQAWAWQDEWHGLTMDDIREIERQTQLALQKKMCGDSQGEEQDVSDENSKSLAATMSSLEKNEELTTPLTNKKNHNEKRLQKHLSPEITPPSDRKSTSKSNLRSSSSGSIKSLQAQAANWRMETLVRESETETGSEDEFYDCESSFNKWSSMCSLDEADIDISPIQGDLGTQDSIFNPSFLKRVTSERGSRRVVTLQSHHSVDGCPDTPEHGSCATTVLILVFHAGSVLDANVDMTAKKSDVTTFKGAFESVMRQHYPTLVGHVIIKLVSCPSICTESLGILSTLSPYSFDCSPSTVETPSLTNDLIPIGAIPLIATTCPEYHESVTKTINSANAVFNEFIKSEDGKGFNGQVCIVGDSMGSVLAYDALVRSFQYNSRHDSENSILDTEITIPNDPLDQQYLNKSHLQAPTPRRRSSSTSENQIKFEFEVSDFFTFGSPLSLILASRKVSDDRSRDITKPPVQQVYNLFHPTDPVASRLEPLLSARFTNLPPINVARYTKYPLGNGQPYHLMELIQSHPQLFGDHLQMPPTPILRRLSEASVQSTVSGLVDNIPLLTMNALQQKWWGSKRLDYALYCPEGLTNFPTNALPHLFHASYWESYDVIAFILRQIGHFDLALYGHSDDKDCSMFKPGQEREKWMRKRTSVKLKNVAANHRANDVIVKEGSSQVFVARFMYGPLDMITLTGEKVDIYMMKDPPAGEWTLLSTVVTDKTGRISYTLPERQSVGCGIYPVKAVVRGDHTSCNFHLAVVPPQTECVVFSIDGSFTASVSVTGRDPKVRAGAVDVVRFWQDLGYLILYITGRPDMQQRKVISWLAEHNFPHGLVFFSDGFSTDPLGHKAAHLNGLINDHGIILHAAYGSGKDITVYNNCGLSPRQIYAIGRIGKKYSNMATTLSDGYASHLADLKQPGAIRPARGNARLLVPRRLLAPVTNAPASRGRR

Summary

EMBL
BABH01005653    NWSH01000345    PCG77240.1    JTDY01001777    KOB72915.1    AGBW02007731    + More
OWR54650.1    KQ459603    KPI92744.1    KQ460883    KPJ11212.1    KQ971320    EFA00532.2    KYB28802.1    KK853076    KDR11738.1    KQ759817    OAD62778.1    GBYB01002498    JAG72265.1    GBYB01002495    GBYB01002496    JAG72262.1    JAG72263.1    NNAY01001125    OXU25046.1    GBYB01014762    JAG84529.1    KK107837    EZA47530.1    KZ288198    PBC33667.1    GL447151    EFN86826.1    GL435870    EFN72549.1    JR036064    AEY56901.1    JR036061    JR036062    AEY56898.1    AEY56899.1    KQ435922    KOX68465.1    ADTU01006929    KQ977199    KYN05007.1    GL887707    EGI70216.1    CVRI01000056    CRL01780.1    KB632366    ERL93644.1    KQ976731    KYM76285.1    GBHO01044387    JAF99216.1    GBHO01044383    JAF99220.1    KQ434998    KZC13276.1    APGK01052899    APGK01052900    KB741216    ENN72528.1    GFDF01002371    JAV11713.1    KQ414582    KOC70885.1    GDHF01003048    JAI49266.1    GDHF01030441    JAI21873.1    GDHF01017798    JAI34516.1    GAMC01016982    JAB89573.1    GDHF01008448    JAI43866.1    GDHF01020105    JAI32209.1    GDHF01009303    JAI43011.1    GBXI01007214    JAD07078.1    GDHF01010816    JAI41498.1    GDHF01004963    JAI47351.1    GAKP01019255    GAKP01019252    JAC39700.1    GAMC01016980    JAB89575.1    CCAG010014042    GBXI01007855    JAD06437.1    GBXI01005337    JAD08955.1    GBBI01002630    JAC16082.1    JXJN01009116    JRES01001705    KNC20731.1    GDHC01005730    JAQ12899.1    GAKP01019253    JAC39699.1    GAMC01016984    JAB89571.1    GBXI01015468    JAC98823.1    CP012528    ALC49367.1    ACPB03005597    ACPB03005598    ACPB03005599    GECU01035839    JAS71867.1    DS235361    EEB15211.1    LNIX01000020    OXA44036.1    GGMS01017618    MBY86821.1    ABLF02030848    ABLF02030858    ABLF02059694    GECL01001822    JAP04302.1    MG020534    AUC64090.1    GEDC01028556    GEDC01017286    GEDC01000059    JAS08742.1    JAS20012.1    JAS37239.1    GALX01004090    JAB64376.1    LN830735    CFW94244.1    NCKU01003324    RWS07747.1    ABJB010061859    ABJB010101686    ABJB010143426    ABJB010148606    ABJB010175315    ABJB010316315    ABJB010403582    ABJB010498213    ABJB010717668    ABJB011110390    DS766923    EEC08941.1    GDHF01004846    JAI47468.1    GEZM01012188    GEZM01012187    JAV93126.1    GEZM01012191    JAV93123.1    AMQN01000748    KB295062    ELU13727.1    GGMS01006727    MBY75930.1    GFDL01000557    JAV34488.1    GEZM01012189    GEZM01012186    JAV93125.1    AEMK02000096    DQIR01101632    HDA57108.1    GEZM01012190    JAV93124.1   
Pfam
PF02121   IP_trans        + More
PF02862   DDHD
PF14768   RPA_interact_C
PF14766   RPA_interact_N
PF09739   MCM_bind
PF07679   I-set
Interpro
IPR004177   DDHD_dom        + More
IPR023393   START-like_dom_sf       
IPR036412   HAD-like_sf       
IPR031315   LNS2/PITP       
IPR001666   PI_transfer       
IPR023214   HAD_sf       
IPR028158   RPA_interact_N_dom       
IPR028159   RPA_interact_C_dom       
IPR019140   MCM_complex-bd       
IPR003599   Ig_sub       
IPR013783   Ig-like_fold       
IPR013098   Ig_I-set       
IPR007110   Ig-like_dom       
IPR003961   FN3_dom       
IPR036116   FN3_sf       
IPR003598   Ig_sub2       
IPR036179   Ig-like_dom_sf       
SUPFAM
SSF56784   SSF56784        + More
SSF49265   SSF49265       
SSF48726   SSF48726       
Gene 3D
PDB
1T27     E-value=1.32034e-54,     Score=543

Ontologies

Topology

Length:
1174
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00678999999999999
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00001
outside
1  -  1174
 
 

Population Genetic Test Statistics

Pi
199.931841
Theta
182.254591
Tajima's D
-0.643926
CLR
0.527119
CSRT
0.212939353032348
Interpretation
Uncertain
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