Gene

KWMTBOMO07163

Annotation

PREDICTED:_limbic_system-associated_membrane_protein-like_[Bombyx_mori]

Location

Bomo_Chr12(-):6860020-6869558      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 1.624

CDS

ATGAAGTGGTTATTTTATTTAATAGTTCTGGTATACATGTTGTATAGAGCAGTATACGCAAAGGAAACAAATCGCGTGACGGTGGATAAGATAGATTACTATCGGAAGTCGCCATTTTGGAAAGCTGGCAGTCGCCATTCCATTAATTGCAAAGGTTCGAGTAAAAGTCAAAAGATTGAATGGACAGACCCAGCTGGTAAAGCTATAAAGCAGATACCATCAAATAGAGTATATGCCTTGGAGCATTCCGTGCCGTCGCCCGCAGGTCGCATTCCTGCTTCACTATTACACTTCAAGTCCGTGACGCTGGACGATACTGGATTGTACACGTGTCGTTCTGGTGACTCAGAAGATCACGCGGAAGTTTGTGTTATTGATCCTGTAGTGTTCAAGAATATACGAACTGAACTGACGGCAGATCTCGGTCGGTCTATAACGTTAAATTGTCACGCCAAAGGCAATCCTGAACCCAGGATTCAGTGGAAAAGAAATGATAATCTTATTAATGAAGGACAAGACGACACGAAATATAAATTGAATACGAAATTCAGCAGCGATGGATTCGAGAGTTCACTCACTATATTTTCATTGACGTCGGAAGACAGCGGATTGTACTCGTGCGTCGCTATACAAGAAAACACAGAACAGTGCAAACACTCAAATTATGTGAACACCACTCTAAACGTGAATCATGCTCCGATTTTTGAAGACGGGAATGATACCGAGTTGGTTTATGGTCGATTCAATCAGAGTATTAACTTGGTTTGCTCCGCAAGAGGATATCCCGCTCCCACATATCGGTGGTTCTCAAATATTAACGATAGTACCCTAATCGAGTTTGACAAGAAACAAATTGAATTCAACCAAGAAGCCAACACTGCTATATTGACAGTCACGGTGAATCAAACCGAAACCTTCAAATGCTCAGCCAAAAACGAATATGGAGAAGCGGAAAAAGATTTTAAATTGGTGGAAACTACGACGAACCCCGCTGGCGGTTTTGAAATTCAGTATTTACATGTGTCTGGATTTAAAGAAGAGCCTAGTGAAAACGATTGGAAAAATGGAGAGCTTGTTACAAAAGAATTTCCTATCTCTGATGACGATCCTGATTTTAAAGGGTCCATAACCAAGTTGAGTGAATTAGAAAAAAATATGAATTACTGGGTTCGTATTAGGGTTTCGAACAGTGCTGGTGTTTCTACGTGGTCTACACCCATACAAATTGGAGCTCTTACTGAAAACGAGGATTTGCAGGAAGAACCACAAGATGAAGAGATTAGTACTGAAAGATCAAAGAGTATTGCTGTTGGAAATAGTGATGTGACATTCTATGGGATCTTCTTTGCTGGAGGCATTTTGGTCGTAGCTGCTGTCTGTATGTTTGTCATGAGGATGGTTTAA

Protein

MKWLFYLIVLVYMLYRAVYAKETNRVTVDKIDYYRKSPFWKAGSRHSINCKGSSKSQKIEWTDPAGKAIKQIPSNRVYALEHSVPSPAGRIPASLLHFKSVTLDDTGLYTCRSGDSEDHAEVCVIDPVVFKNIRTELTADLGRSITLNCHAKGNPEPRIQWKRNDNLINEGQDDTKYKLNTKFSSDGFESSLTIFSLTSEDSGLYSCVAIQENTEQCKHSNYVNTTLNVNHAPIFEDGNDTELVYGRFNQSINLVCSARGYPAPTYRWFSNINDSTLIEFDKKQIEFNQEANTAILTVTVNQTETFKCSAKNEYGEAEKDFKLVETTTNPAGGFEIQYLHVSGFKEEPSENDWKNGELVTKEFPISDDDPDFKGSITKLSELEKNMNYWVRIRVSNSAGVSTWSTPIQIGALTENEDLQEEPQDEEISTERSKSIAVGNSDVTFYGIFFAGGILVVAAVCMFVMRMV

Uniprot

A0A2H1VBZ7   A0A2A4JG26   A0A194R5S7   A0A194PNN6   A0A212F9T9   A0A3S2N6K1   + More
A0A212F9U5   A0A2A4JGX1   W8AST7   W8BD55   A0A1J1I1R6   H9JM02   A0A1W4UIW6   A0A0A1XD89   A0A0M3QSZ8   B4JAH4   A0A2J7R8N1   A0A1I8M2C2   W8ALP2   A0A0L0C706   A0A182H555   B4KLE0   A0A034UYQ7   B4NZ06   A0A0L0CMK1   A0A0A1X7L8   B3N495   B4I3C2   B4Q324   A0A2H8THC6   A0A0K8W9X7   A0A0J9TFK6   Q9VR25   B4LUV2   B4LVH9   A0A1S4J637   B0W5V2   T1J3N4   A0A1B6CVZ1   A0A0K2U1D1   B3MTZ8   A0A3B0JGE0   A0A3B0K2T3   A0A0Q9XIZ7   B4KIY3   A0A1D1UJH3   C3YY39   A0A067R4S6   A0A1B6KQK2   B4MVI2   B4MTW1   A0A1B0AZB3   A0A1A9YQX8   A0A3B0JV17   A0A1B0F9W5   A0A0R3NKV5   A0A2S2NJ87   B4IDE7   A0A0R3NR58   B4NW33   A0A0R3NKV1   A0A0R3NKR6   B4Q7L2   A0A0R3NRN1   A0A0J9QU46   Q59E14   A0A1W4V1S0   A0A182NEE1   B4JQQ7   B3N901  

Pubmed

26354079    22118469    24495485    19121390    25830018    17994087    + More
18057021    25315136    26108605    26483478    25348373    17550304    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    27649274    18563158    24845553    15632085   

EMBL

ODYU01001738    SOQ38347.1    NWSH01001507    PCG71027.1    KQ460883    KPJ11221.1    + More
KQ459603    KPI92735.1    AGBW02009558    OWR50506.1    RSAL01000299    RVE42787.1    OWR50507.1    PCG71026.1    GAMC01018837    JAB87718.1    GAMC01018836    JAB87719.1    CVRI01000038    CRK94155.1    BABH01005632    GBXI01005367    JAD08925.1    CP012523    ALC38009.1    CH916379    CH916368    EDV94210.1    EDW02760.1    NEVH01006721    PNF37194.1    GAMC01016896    GAMC01016895    JAB89660.1    JRES01000827    KNC28021.1    JXUM01025687    JXUM01025688    JXUM01025689    JXUM01025690    KQ560730    KXJ81109.1    CH933807    EDW12821.1    GAKP01022836    JAC36116.1    CM000157    EDW87670.1    JRES01000186    KNC33506.1    GBXI01007013    JAD07279.1    CH954177    EDV57765.1    KQS70110.1    CH480820    EDW54267.1    CM000361    CM002910    EDX03740.1    KMY88114.1    GFXV01001722    MBW13527.1    GDHF01004480    JAI47834.1    KMY88115.1    AE014134    BT031346    AAF50983.2    ABY21759.1    CH940649    EDW64279.1    EDW64373.2    DS231844    EDS35755.1    JH431829    GEDC01019632    GEDC01012950    GEDC01010991    JAS17666.1    JAS24348.1    JAS26307.1    HACA01014728    CDW32089.1    CH902624    EDV33327.1    OUUW01000004    SPP79322.1    SPP79321.1    KRG03784.1    EDW13496.1    BDGG01000001    GAU88535.1    GG666563    EEN54998.1    KK852698    KDR18247.1    GEBQ01030265    GEBQ01026267    JAT09712.1    JAT13710.1    CH963857    EDW75702.2    CH963852    EDW75550.2    JXJN01006233    JXJN01006234    SPP79320.1    CCAG010016253    CM000071    KRT01543.1    GGMR01004569    MBY17188.1    CH480829    EDW45573.1    KRT01549.1    EDW87313.2    KRT01546.1    KRT01544.1    EDX03392.1    KRT01552.1    KMY87561.1    AAX53591.3    CH916372    EDV99237.1    EDV57401.2   

Proteomes

UP000218220    UP000053240    UP000053268    UP000007151    UP000283053    UP000183832    + More
UP000005204    UP000192221    UP000092553    UP000001070    UP000235965    UP000095301    UP000037069    UP000069940    UP000249989    UP000009192    UP000002282    UP000008711    UP000001292    UP000000304    UP000000803    UP000008792    UP000002320    UP000007801    UP000268350    UP000186922    UP000001554    UP000027135    UP000007798    UP000092460    UP000092443    UP000092444    UP000001819    UP000075884   

PRIDE

H9JM02    Q9VR25    Q59E14   

Pfam

PF07679   I-set        + More
PF00750   tRNA-synt_1d
PF05746   DALR_1
PF00047   ig
PF00041   fn3
PF13895   Ig_2
PF12355   Dscam_C

Interpro

IPR013783   Ig-like_fold        + More
IPR003961   FN3_dom       
IPR003599   Ig_sub       
IPR007110   Ig-like_dom       
IPR036116   FN3_sf       
IPR036179   Ig-like_dom_sf       
IPR003598   Ig_sub2       
IPR013106   Ig_V-set       
IPR013098   Ig_I-set       
IPR009138   Neural_cell_adh       
IPR001412   aa-tRNA-synth_I_CS       
IPR014729   Rossmann-like_a/b/a_fold       
IPR001278   Arg-tRNA-ligase       
IPR009080   tRNAsynth_Ia_anticodon-bd       
IPR008909   DALR_anticod-bd       
IPR035684   ArgRS_core       
IPR013151   Immunoglobulin       
IPR021012   Dscam_C       

SUPFAM

SSF49265   SSF49265        + More
SSF48726   SSF48726       
SSF47323   SSF47323       

Gene 3D

2.60.40.10     3.40.50.620    

CDD

cd00063  FN3

ProteinModelPortal

A0A2H1VBZ7   A0A2A4JG26   A0A194R5S7   A0A194PNN6   A0A212F9T9   A0A3S2N6K1   + More
A0A212F9U5   A0A2A4JGX1   W8AST7   W8BD55   A0A1J1I1R6   H9JM02   A0A1W4UIW6   A0A0A1XD89   A0A0M3QSZ8   B4JAH4   A0A2J7R8N1   A0A1I8M2C2   W8ALP2   A0A0L0C706   A0A182H555   B4KLE0   A0A034UYQ7   B4NZ06   A0A0L0CMK1   A0A0A1X7L8   B3N495   B4I3C2   B4Q324   A0A2H8THC6   A0A0K8W9X7   A0A0J9TFK6   Q9VR25   B4LUV2   B4LVH9   A0A1S4J637   B0W5V2   T1J3N4   A0A1B6CVZ1   A0A0K2U1D1   B3MTZ8   A0A3B0JGE0   A0A3B0K2T3   A0A0Q9XIZ7   B4KIY3   A0A1D1UJH3   C3YY39   A0A067R4S6   A0A1B6KQK2   B4MVI2   B4MTW1   A0A1B0AZB3   A0A1A9YQX8   A0A3B0JV17   A0A1B0F9W5   A0A0R3NKV5   A0A2S2NJ87   B4IDE7   A0A0R3NR58   B4NW33   A0A0R3NKV1   A0A0R3NKR6   B4Q7L2   A0A0R3NRN1   A0A0J9QU46   Q59E14   A0A1W4V1S0   A0A182NEE1   B4JQQ7   B3N901  

PDB

3DMK     E-value=1.64022e-15,     Score=202

KEGG

101744520    no KO assigned | (RefSeq) limbic system-associated membrane protein-like

GO

GO:0016021   GO:0016020   GO:0007155   GO:0005524   GO:0004814   GO:0006420   GO:0005515   GO:0008270   GO:0015074   GO:0031032   GO:0030060   GO:0019752   GO:0016491   GO:0016295   GO:0016296  

PANTHER

PTHR11956  

SignalP

Position:   1 - 20,         Likelihood:  0.996564

 

 

Length:

467

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

27.35454

Exp number, first 60 AAs:

4.93144

Total prob of N-in:

0.23280

outside

1  -  441

TMhelix

442  -  464

inside

465  -  467

 

 

Pi

207.991077

Theta

176.119043

Tajima's D

-0.986605

CLR

0.905061

CSRT

0.139593020348983

Interpretation

Uncertain