Gene

KWMTBOMO07162

Pre Gene Modal

BGIBMGA010554

Annotation

PREDICTED:_neural_cell_adhesion_molecule_1-like_isoform_X2_[Papilio_xuthus]

Location

Bomo_Chr12(+):6841419-6857038      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 1.235 PlasmaMembrane   Reliability : 1.247

CDS

ATGTTTGGACCACCAAACCTTTTGTCAACGGAGGTGGACGACGATGAGCCATTTCTTGAAATATTGGCACGATCCACGATTTACAATACTGGAGAGAGAAAGGCGATTTTTTGCAGAGGAAAAAATTTAGTAGAGCCAATTAAATGGTACTCTCCTTCGGGAAAACTAATAGAAGCGCAATCTTTGAAAAACAAGAGAGTATACGTTGAAAGAATTGTTGAGGAATCAGGGGAACATGCGCCGTTAATCATCCAATACATCAAGATTGCGGACAACGGTAACTGGACTTGCAGGTCTGGAGATTTGAGTGAAACCATACAATTCATTGTCGGAGAAAAGGTGAACATTACTAACAGGAATGTTGAAAGAGAAGGGGAAGAAGGAAAATCAATTGTGCTGACCTGTGAAGCCAAGGGACATCCGACACCGGTCGTAATTTGGTACAAAGAAAATTCTCGAATCCCTAATGATACTAAAAAGTACGAGCACAGGGCTGACAACTCGTTGGAGATCAAGAATCTGAACCACGCTGACGTCGGACTGTACGTGTGCAAAGTTAGACAAAAGGCGCTGTCCTACTACACAGACAAAACAGTCCGTCTTTCTGTCCTACATAAGCCGATTCTGTATAACAACTTCACGGGAACGATCGACACCACGAAATACAAGACTGAAGAAGTTTACGCAATTATGAATGAAACGAAGAACATCACATGCAGCGCTATCGCAAACCCCCCGCCGACTTACACCTGGTACAGAAGAAACAATGGTTACGACGATGATGTTCCTATCACTGACGAGGAGATGGTGGTCACTTCAGAAAACGGTACATATTCAGTACTCATTTTGAGGATGCGCGATAACAGTTCAATCGGCGAGTACAAATGCACAGCGAACAACATCAAGGGGAAAGAATCTATTATATTCCATGTAAATCCAGCAGCTAAACCCAACAAACCTGATTTTGTAAGCTTTCTTTACGCTAACACTACGACTCTGACTTTCAATGTTTCCTGCTCGAGCTGCCCAATGGAACTAGAAGAAGATAGGTCACCCGACCCAGCAAACCTTACTGTTAAAGGATATTCATTCCAAATGGTTCCTGCCCAAGAAAATTACCCTCCAGATTGGGATTCTGCTCAAGATTTCGAAGTGGACATCACAGATCCTAACGACACGTTGTTCACGGTCGGCCCACTAGCCAACAAGACAAAGTACCACGTCCGCATCCGAAGCTGCAACGCGGCCGGCTACTCTGAGTGGGTGTACTTCGAGACACTACTAGAGACGAGCCACGCTGACAGGATCATCGCAGCGATCGCTGTCATCTTAGCGGCCTTCACGATTACAAGCTATTTCTAA

Protein

MFGPPNLLSTEVDDDEPFLEILARSTIYNTGERKAIFCRGKNLVEPIKWYSPSGKLIEAQSLKNKRVYVERIVEESGEHAPLIIQYIKIADNGNWTCRSGDLSETIQFIVGEKVNITNRNVEREGEEGKSIVLTCEAKGHPTPVVIWYKENSRIPNDTKKYEHRADNSLEIKNLNHADVGLYVCKVRQKALSYYTDKTVRLSVLHKPILYNNFTGTIDTTKYKTEEVYAIMNETKNITCSAIANPPPTYTWYRRNNGYDDDVPITDEEMVVTSENGTYSVLILRMRDNSSIGEYKCTANNIKGKESIIFHVNPAAKPNKPDFVSFLYANTTTLTFNVSCSSCPMELEEDRSPDPANLTVKGYSFQMVPAQENYPPDWDSAQDFEVDITDPNDTLFTVGPLANKTKYHVRIRSCNAAGYSEWVYFETLLETSHADRIIAAIAVILAAFTITSYF

Uniprot

H9JM02   A0A2A4JGX1   A0A2H1V173   A0A194PJ37   A0A212F9U5   A0A194R0J4   + More
A0A3S2N6K1   A0A182NEE1   A0A182J736   A0A084VPE7   A0A0D3QDB5   A0A182RGG1   A0A182QG23   A0A182MRE5   A0A0D3QCN6   A0A0D3QCX8   A0A0D3QDB1   A0A0D3QCY8   A0A0D3QCP3   A0A0D3QCM8   A0A0D3QDA7   A0A0D3QDI4   A0A0D3QDJ3   A0A0D3QCY3   Q7QG58   A0A182VGZ9   A0A182F5W4   A0A182X7N4   A0A182L5N5   A0A182VUZ9   A0A182IE33   A0A182H555   A0A194R5S7   A0A182UAU5   A0A182K6S0   A0A182P383   B0W5V2   A0A1S4J637   C3YY39   A0A194PNN6   A0A1W4UIW6   B4KLE0   D2A2M5   A0A182H630   A0A3B0JX29   B3MTZ8   A0A336LT49   B4I3C2   B4Q324   B4NZ06   A0A0J9TFK6   Q9VR25   B4JQQ7   B3N495   Q29LA6   A0A0M4E6D9   B4GQC8   A0A146M1R4   W5JJ33   A0A087Z3M8   A0A212F9T9   A0A1Y1N5J0   A0A0L0CMK1   A0A1B0F9W5   A0A146LR12   A0A0L0C706   B4LUV2   A0A0M3QSZ8   A0A1A9YQX8   A0A1B0AZB3   B4MTW1   W8AST7   W8BD55   B4NW33   A0A3B0JV17   A0A3B0JGE0   A0A3B0K2T3   A0A2H1VBZ7   A0A0Q9XIZ7   B4KIY3   A0A1I8MMA3   A0A0A1XD89   A0A2A4JG26   B4IDE7   B4MVI2   B3N901   B4LVH9   A0A0K8W9X7   B4Q7L2   A0A0J9QU46   Q59E14   D0Z750   B4JAH4   A0A1I8M2C2   Q29LN2   W8ALP2   B3MJD9   A0A2J7R8N1  

Pubmed

19121390    26354079    22118469    24438588    25552603    12364791    + More
20966253    26483478    18563158    17994087    18362917    19820115    22936249    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    18057021    15632085    26823975    20920257    28004739    26108605    24495485    25315136    25830018   

EMBL

BABH01005632    NWSH01001507    PCG71026.1    ODYU01000209    SOQ34600.1    KQ459603    + More
KPI92734.1    AGBW02009558    OWR50507.1    KQ460883    KPJ11222.1    RSAL01000299    RVE42787.1    ATLV01015001    KE524999    KFB39841.1    KP274524    AJC98670.1    AXCN02000859    AXCM01000195    KP274530    AJC98676.1    KP274521    AJC98667.1    KP274519    AJC98665.1    KP274531    AJC98677.1    KP274532    AJC98678.1    KP274513    KP274515    KP274516    KP274517    KP274523    KP274527    KP274529    AJC98659.1    AJC98661.1    AJC98662.1    AJC98663.1    AJC98669.1    AJC98673.1    AJC98675.1    KP274514    KP274520    KP274522    KP274525    AJC98660.1    AJC98666.1    AJC98668.1    AJC98671.1    KP274518    AJC98664.1    KP274528    AJC98674.1    KP274526    AJC98672.1    AAAB01008839    EAA05929.4    APCN01004558    JXUM01025687    JXUM01025688    JXUM01025689    JXUM01025690    KQ560730    KXJ81109.1    KPJ11221.1    DS231844    EDS35755.1    GG666563    EEN54998.1    KPI92735.1    CH933807    EDW12821.1    KQ971338    EFA02221.1    JXUM01026933    KQ560772    KXJ80946.1    OUUW01000004    SPP80050.1    CH902624    EDV33327.1    UFQT01000108    SSX20101.1    CH480820    EDW54267.1    CM000361    CM002910    EDX03740.1    KMY88114.1    CM000157    EDW87670.1    KMY88115.1    AE014134    BT031346    AAF50983.2    ABY21759.1    CH916372    EDV99237.1    CH954177    EDV57765.1    KQS70110.1    CH379060    EAL34139.2    CP012523    ALC38127.1    CH479187    EDW39800.1    GDHC01004876    JAQ13753.1    ADMH02001023    ETN64382.1    GGFL01000157    MBW64335.1    OWR50506.1    GEZM01013147    GEZM01013146    JAV92718.1    JRES01000186    KNC33506.1    CCAG010016253    GDHC01008368    JAQ10261.1    JRES01000827    KNC28021.1    CH940649    EDW64279.1    ALC38009.1    JXJN01006233    JXJN01006234    CH963852    EDW75550.2    GAMC01018837    JAB87718.1    GAMC01018836    JAB87719.1    EDW87313.2    SPP79320.1    SPP79322.1    SPP79321.1    ODYU01001738    SOQ38347.1    KRG03784.1    EDW13496.1    GBXI01005367    JAD08925.1    PCG71027.1    CH480829    EDW45573.1    CH963857    EDW75702.2    EDV57401.2    EDW64373.2    GDHF01004480    JAI47834.1    EDX03392.1    KMY87561.1    AAX53591.3    BT100297    ACZ06883.1    CH916379    CH916368    EDV94210.1    EDW02760.1    EAL34013.2    GAMC01016896    GAMC01016895    JAB89660.1    CH902620    EDV31349.1    NEVH01006721    PNF37194.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000007151    UP000053240    UP000283053    + More
UP000075884    UP000075880    UP000030765    UP000075900    UP000075886    UP000075883    UP000007062    UP000075903    UP000069272    UP000076407    UP000075882    UP000075920    UP000075840    UP000069940    UP000249989    UP000075902    UP000075881    UP000075885    UP000002320    UP000001554    UP000192221    UP000009192    UP000007266    UP000268350    UP000007801    UP000001292    UP000000304    UP000002282    UP000000803    UP000001070    UP000008711    UP000001819    UP000092553    UP000008744    UP000000673    UP000037069    UP000092444    UP000008792    UP000092443    UP000092460    UP000007798    UP000095301    UP000235965   

PRIDE

H9JM02    Q9VR25    Q59E14    D0Z750   

Pfam

PF07679   I-set        + More
PF00047   ig
PF00041   fn3
PF13895   Ig_2

Interpro

IPR036116   FN3_sf        + More
IPR013098   Ig_I-set       
IPR003961   FN3_dom       
IPR007110   Ig-like_dom       
IPR003599   Ig_sub       
IPR013783   Ig-like_fold       
IPR003598   Ig_sub2       
IPR036179   Ig-like_dom_sf       
IPR013106   Ig_V-set       
IPR013151   Immunoglobulin       
IPR009138   Neural_cell_adh       
IPR003006   Ig/MHC_CS       

SUPFAM

SSF48726   SSF48726        + More
SSF49265   SSF49265       

Gene 3D

2.60.40.10    

CDD

cd00063  FN3

ProteinModelPortal

H9JM02   A0A2A4JGX1   A0A2H1V173   A0A194PJ37   A0A212F9U5   A0A194R0J4   + More
A0A3S2N6K1   A0A182NEE1   A0A182J736   A0A084VPE7   A0A0D3QDB5   A0A182RGG1   A0A182QG23   A0A182MRE5   A0A0D3QCN6   A0A0D3QCX8   A0A0D3QDB1   A0A0D3QCY8   A0A0D3QCP3   A0A0D3QCM8   A0A0D3QDA7   A0A0D3QDI4   A0A0D3QDJ3   A0A0D3QCY3   Q7QG58   A0A182VGZ9   A0A182F5W4   A0A182X7N4   A0A182L5N5   A0A182VUZ9   A0A182IE33   A0A182H555   A0A194R5S7   A0A182UAU5   A0A182K6S0   A0A182P383   B0W5V2   A0A1S4J637   C3YY39   A0A194PNN6   A0A1W4UIW6   B4KLE0   D2A2M5   A0A182H630   A0A3B0JX29   B3MTZ8   A0A336LT49   B4I3C2   B4Q324   B4NZ06   A0A0J9TFK6   Q9VR25   B4JQQ7   B3N495   Q29LA6   A0A0M4E6D9   B4GQC8   A0A146M1R4   W5JJ33   A0A087Z3M8   A0A212F9T9   A0A1Y1N5J0   A0A0L0CMK1   A0A1B0F9W5   A0A146LR12   A0A0L0C706   B4LUV2   A0A0M3QSZ8   A0A1A9YQX8   A0A1B0AZB3   B4MTW1   W8AST7   W8BD55   B4NW33   A0A3B0JV17   A0A3B0JGE0   A0A3B0K2T3   A0A2H1VBZ7   A0A0Q9XIZ7   B4KIY3   A0A1I8MMA3   A0A0A1XD89   A0A2A4JG26   B4IDE7   B4MVI2   B3N901   B4LVH9   A0A0K8W9X7   B4Q7L2   A0A0J9QU46   Q59E14   D0Z750   B4JAH4   A0A1I8M2C2   Q29LN2   W8ALP2   B3MJD9   A0A2J7R8N1  

PDB

1QZ1     E-value=1.65834e-11,     Score=168

KEGG

101741075    no KO assigned | (RefSeq) hemicentin-1-like

GO

GO:0016021   GO:0016020   GO:0007155   GO:0005515   GO:0008270   GO:0015074   GO:0031032   GO:0030060   GO:0019752   GO:0016491   GO:0016295   GO:0016296  

Length:

453

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

2.92138

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00110

outside

1  -  453

 

 

Pi

196.171406

Theta

167.527107

Tajima's D

0.224984

CLR

0.426404

CSRT

0.429978501074946

Interpretation

Possibly Positive selection