SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO07160
Annotation
PREDICTED:_uncharacterized_protein_LOC106133235_[Amyelois_transitella]
Location in the cell
Cytoplasmic   Reliability : 1.42 Mitochondrial   Reliability : 1.859
 

Sequence

CDS
ATGTACAGTCGCGTGACTGTAGTTGTTGCCGTACCCAAAAAATATTACAAAGAATCACTACGGACCGTCGAGGCGGTTTACCCGGTCTTTGATGACTGGGTGAATCGTGGCGAAGGACGTCTCACCTTTCGTCTGGTGCAGGTGCTGACCGGGCACGGATGCTTCGGGAAGTACCTGCGCCGGATAGGGGCTGAGCCGGCGACGAGATGTCACCATTGTGGACACGACCTGGACACGGCGGAGCATACGCTCGCTGTCTGCCCCGCTTGGGAGGTGCAGCGCCGTGTCCTGGTCGCAAAGATAGGACCTGACTTGTCGCTGCCTGGCGTCGTGGCGTCGATGCTTGGCGGCGATGATTCATGGAAGGCTATGCTCGACTTCTGCGAGTGCACCATCTCGCAGAAGGAGGCGGCGGGGCGAGACTCAATACAGGAACAACTTAGTCAAATCCTATCTCGACTGGCTCCGTTAGCAACGGTGGTGGAAGACATCAGGAGCATCAAGGCTGAAATAGGCGATCTCAAGAATTCCCTCGAGCTGGCATATCAACTCACTGGTGATCTCTCGAACACGGTGCAGGACTTGGGCTCTAGGATATGTACAGTTGAAAAGATCGGCAGTGAGGTTCCTGCTCTTCGTGACGAAATTACCAGGTTGAACAATGAGCTACAGGACCGGGACCAGTGGGCCCGTGCGAATAACGTGGAGATCCGTGGTATACCGGAAAAGAAGGGTGAAAATCTATATGATGTCGTCAGCTGTATCGGCCAACTTTATAATGCTTCCATTAAGAAAGAGGAAATTAATTACATTGCACGTATCCCGACTCGTGTGCTGAAGGCTGAAAAATCTATTATTGTTGCGTTCAACAATAGGTATCGTAAGGAGGAACTTATCGCTTTAGCTCGTAAAATTAAGAAGAACAGTCTCTCGGACTTGGGTATACGAGGAGAGGGAAAATTTTATCTGAACGACCATTTGACGCAGCGTAATAAAACATTATTAAACAAAGCAAAGTCGCTCGCGAAGGATAATAATTTCCAATATATTTGGGTAAAACATTGTAAAATAATGGCCCGCAAATCAGATACATCCCCGATATTTTTTATAAAAGAGGAAAGGGATTTGAAGAAGATAACCTGA
Protein
MYSRVTVVVAVPKKYYKESLRTVEAVYPVFDDWVNRGEGRLTFRLVQVLTGHGCFGKYLRRIGAEPATRCHHCGHDLDTAEHTLAVCPAWEVQRRVLVAKIGPDLSLPGVVASMLGGDDSWKAMLDFCECTISQKEAAGRDSIQEQLSQILSRLAPLATVVEDIRSIKAEIGDLKNSLELAYQLTGDLSNTVQDLGSRICTVEKIGSEVPALRDEITRLNNELQDRDQWARANNVEIRGIPEKKGENLYDVVSCIGQLYNASIKKEEINYIARIPTRVLKAEKSIIVAFNNRYRKEELIALARKIKKNSLSDLGIRGEGKFYLNDHLTQRNKTLLNKAKSLAKDNNFQYIWVKHCKIMARKSDTSPIFFIKEERDLKKIT

Summary

Uniprot
Interpro
IPR013083   Znf_RING/FYVE/PHD        + More
IPR004244   Transposase_22       
Gene 3D
ProteinModelPortal

Ontologies

GO

Topology

Length:
380
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01678
Exp number, first 60 AAs:
0.00296
Total prob of N-in:
0.03086
outside
1  -  380
 
 

Population Genetic Test Statistics

Pi
241.091189
Theta
156.4894
Tajima's D
1.131946
CLR
0.000211
CSRT
0.697165141742913
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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