SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO07154
Annotation
reverse_transcriptase_[Danaus_plexippus]
Location
Bomo_Chr12(+):6664077-6678153      View in EpiBrowser
Location in the cell
Mitochondrial   Reliability : 1.173 Nuclear   Reliability : 1.689
 

Sequence

CDS
ATGGACAATTGTAAAGAGAAATTACCCCAGGAGGGTACCTCCCGCTCAGCGGGAGGAGAATCCCTCCGTGCCTCCGAGCAATCGGAGGCACGCAGCCCCTCGTATTCTGGGGTGGGCAACAATTGCCAAGATGTAGGAGGCGGTAGCACGAACCGCGAAAGGGAGAGGATCCCGTTCGTGCAACCTGAGCGCTGTGACAGCGCGCTCTCACTACGCTCAACGCGAAGCTCCGCAAGGGGATACGCGTCAAGCGGTCGAGAGTCGCCGCTGTTCCTGCAAGACAGCGTTGGGCGATCTATCAGCCGGAACCAGGCTGAACCAAGGACTCGGAGGAAGCGGAAGACGGTCCAACGACCAGCGACCACCGCTCCTTCCGACTCATCGGAGGTTGAACCCGCGCCCGCCAAATTCATGGCGGTTGAGGAAGGGCCGGTAAACGTTGTGGTGTGTTCGGCCATGGAACGTAGTCAGGAGCTGAGGCTGACTTATAGCATACCAGCTGCTACCCCTTCGGTGCGAACCGATGCCCCCCGCTGTCGGACAGCGGAACGGACCCGAGAAGGTGAGGTTGAGCGGCTGACCCGCTCCCTCATGGAGATAGATCCAGATGACCCCGGAGGAAAGTTTCATGTGCTGAAGGAAATTGTCTCCTCAGTGGCGTCCAAGTCAGGCTCTTTAAAGGGCACGTACGTCCGGGCCCTGAAGTGTGTAGCCGCTACCCTGGAAGTATATCTGGAGGCTTTCCTTCAGCGCACAAGCACGGAGGAGGTAGCCAACCTGCGGTCGCAACTGGAGCGGTTGCACTCAGAAAATGGGGAGCTACGGATGGAGAGCGTGCGTGCGAGAGAGGAGTTGACTGATATGCGTGCGACCCTCGATGGGGTTGTTGGATGCCAAAGCAATTTGACAATTCCGCAACCCCCGCTAGAAGACATTCTACAAGAAAAGGATAAGGAGATCGAGGAGCTGAAGCGGCAAATCACGATCCTGGAGGCTCGCACCTCCAAAGTTGAGCGCGCGAGGCCATTGCTGGCGCACGAGCGCCCCGCGCCTATGTCATCGTCACGTGGAACAGTGGCGGCACCAGCGCCTTCAAAAGCCACAGTGACCAAAGTGGGTGCAGCACCCGCGACGCGCGCTTTGGCTAACTTGGCCGCACCGGTCAAGTCTGCTAGCAGGCGAGTGCATGCTCAGCCCGCAAGGCCGCCGACCGCCGCTCCTGCCCCACTCCAGCCAGCAAAAGCGGGGTCTGGAAGGAGTCGCGCTAAGCAGAAGAAGGGCCTGAACGCCGCCAAGCAGGCGCAGACCCCCCAGCCCCGTCCGCTACCATCCGCCCCGTCCAACATGAACGAGGCGTGGACCACAGTGGTGAGGCGGGGTGGAAGGAAAACACAAACCTCGCTTGACCCTCGGCCCGTCCTTGTGGCCGCCGCTCCCCAGACTATGGGTCGAGAGGCAGCTAGGACAAAAAAGAAAGGGCGGAAGTCAAGGAAACCGCGCGCCCCACGGTCGGCGGCAGTAGTTTTAGAGCTGCTGCCGGCTGCGAAGGAAAAAGGCTTCACTTACGGGGAGGTGATGGCCCGGGCGCGCTGTAGCGTTGATGTAGACGCTATAGGCGTAGAGGGTGGCATCCGAGTCCGGCACACAGCTAACGGGGCTCGGCTGCTTGAATGTCCCGGTGCCGACTCCGGCGCGGCTGCAGACAGACTGGCGGCCCGGCTTCGCGAAGTCCTGCCGGACCCGGAAGTCGTGCGAATCGAGAGGCCCGTCAAGATGGCAGAGATTAAGGTGACGGGCCTGGATGAGTGCGCTACTCAGATGGAAGTGGCCGCCGCTATTGCATCGCAGGGCAACTGCGCCCTCGCACAAGTGAAGGTGGGAGAGCTCCGGAGTTGTTACTCTGGGGCTTTCACCGTGTGGGCGCGTTGCCCCGTGCAGGCGGCCACCCTGTTGGCCACGCCTGCACAAGGTCGGCCTGCCGACTCGCCGGGGAGGCTGCGCGTGGGTTGGGTGATAGCCCACGTGCAGCTGCAGGAGGCACGTCCATGGCGATGCCTCCGGTGCTTTGGCACCGGGCACGGCCTCGCCAAGTGCCCGTCGGCTGTGGATCGCAGCGGACTTTGCTTCCGTTGCTGTCAGCCCGGACACAAGGCAGCCTCCTGCACCGCTGCAACACCGCACTGCGTGTTGTGTGATGCAGCGAAACGGCGGGCCGATCATCGGGCCGGGGGTCCGGCCTGTCTTTCCGCACCCTCCTCCACAAAGAGGAGGCGTGGCGGGAAAAAGAAGAAAAAGTCAGAGGAAGAGCCGGCTGCGTGTGAAACAGCCGGCCCGTCAGTTCCCGCCGCGGCCGTCGGGCCGCAAGGCGGGACGGAAGACGAGGGAGCGATGGACGATCTCCTCGTCCATACCATGGCGGAGTGGTTCATCGACATCGCGATCGTCGCGGAGCCATACTTCGTACCTTCCGACCGGGAGGACTCCTGGGCCGGAGATGTCGATGGCTCCGTGGCGATCGTGATGCGACAGTCGGCGGCGTTACCCCCCCTTGGAATGGTGGCCAGGGGATCTGGGTACGTCGTAGTTAGGGTCGACGAAACCGTCGTGATCGGGGTGTACTTCTCTCCGAACAGGAGTCTCGCCGAGTTCGAGCAGTTCCTGGGTGGGCTCGAGGCGTTGGTTCATCGCTTCGAGTCTCGCCCAGTGATACTAGCGGGGGACCTCAACGCTAAATGTACGGCGTGGGGATCCCCCCGCACGGACTCGCGTGGCGAATTCCTGTCGGAGTGGGCTTTCGCGACCGGCCTCTGTCTCCTAAACAGAGGTTCGGTCGCGACCTGCGTGCGGTGGAACGGGGAATCACACGTGGACGTATCGTTCGCGTCTCCGTCCGCCGCGCGCCGTGTCTGTGGTTGGCGTGTCCTCGAGGGGGCGGAGACGCTCTCGGATCATCGGTTCGTCCGATTTGAGCTCTCCGTTTCCACCTCGTTGAACGCGCCGGCCGAAGACGCCCGCGGCGAGGAGGAGCTCCCGCGTAGTGCTCCCCGATCATTCCCGCGATGGGCACTGAAGCGCCTGAACAAGGTGCTTGCGGTGGAGGCGGCCACAGTGGCCGCGTGGGCGCCGATGCCCGCGCGTCTAGTGGACGTGGAGTTGGAGGCCGAATGGTTCCGGGGTACGATGCGTCGCGTCTGCGATGCTGCGATGCCCCGGGTCAGCGGTCGCGCTCCGCGTGGCGGTGCGTACTGGTGGACGCCCGAGATCGCGCTCCTCCGAGAGGAGTGCGTGCGGGCGCGCCGCCGAAGCGCCCGCCACCGCCGTCGCCGCCTTCGCGATGCGGACTTCGCGGAGGTGGCGACCCGCCTGCATGCCGACTGCCGTCAGAAGCAGGAGGCACTGCGGCGGGCCATCGGCGAGGCCAAGTCTCAGAGCATGAAGACGCTCCTGGAGACGCTTGACCAAGATCCTTGGGGGCGCCCGTACCAAACGGTCCGCAAGAAATTGCGGCCGTGGGCGCTCCCGGTGACGGAACGTCTCCAGCCTCAGCAGCTGCGGGAGATTGTCTCCGGGCTGTTCCCGCGGATGGAGAGGGGCTTCGAGCCCCCTTCCATGGGCGCGCCACCACGCAGTAGCGTGAGCGGTGATGCCCCTGCTGAGGTGGTCCCTCCGAGCATCTCGGAGGAGGAGATTCGTGCGGCCGTGTCGAGGATGCGGAGGAAGGACGCGGCCCCCGGCCCTGACGGTGTTCACGGCCGGGTCTGGGATTTGGCCTTCGGTGCCCTTGGGGACCGACTCGTGCGGCTCTATGAAGCCTGCCTCGAGTCGGGACGGTTTCCGAAGCAGTGGAAGACGGGCAGACTTGTTCTGCTAAGGAAGGAGGGACGCCCCGCGGACTCACCTGCGGGATATCGTCCCATCGTGCTGCTGGACGAGGCTGGAAAATTGCTCGAGCGGGTGGTGGCCGCCCGCATCGTCCAGCATCTGACGGGGGTGGGTCCCGATCTGTCAGCGGAGCAGTTCGGATTCAGGGAGGGCCGCTCGACCATCGACGCGGTGATGCGCGTGCGTGCCCTCTCTGATGAGGCTGTCGGCCAGGGCGGGGTTGCACTGGCGGTGTCCCTTGACATCGCCAACGCGTTCAACACCTTGCCCTGGTCGGTGATCGCAGGGGCGCTGGAGTATCACGGTGTCCCTGCGTATCTCCGTCGGCTGATCGGGTCCTACCTCGAGGACAGGTCGGTCGTGTGCACCGGGCACGGTGGGGCGGTGCTCCGCTTCCCCGTCCAGCGCGGTGTTCCACAGGGGTCGGTCCTTGGCCCTCTCTTGTGGAACATCGGCTACGACTGGGTCCTGCGTAGCGCCCTAAGTGCTCCTCTTCCGGGTCTGAGCGTAGTTTGTTACGCGGACGACACTTTGGTCGTGGCCCGGGGGAGGGACTTGCGAGAGTCTGCCCGTCTTTCCTGTGCGGGGGTGGCCTTCGTCATCGGCAGGATCCGAAGGCTGGGTCTGGAGGTGGCGCTCGATAAATCCCAGGCCCTGTTGTTTCACGGGGCCCGGAGAGCGCCGCCTCAGGGGGCCCACCTCGTGATCGGAGGCGTTCGCGTCGAGATCGAGGCAACCGGGTTGCGGTACCTCGGTCTCGTACTGGACGGTCGTTGGAGCTTCCGCGCTCACTTTGAAAGATTAGGTCCCCGACTGATGGCGGCTGCCGGCTCGCTGAGTCGGCTGTTGCCGAACGTCGGGGGGCCTGACTTGGTGGTGCGCCGCCTCTACACGGGGGTGGTGCGGTCGATGGCACTGTACGGGGCTCCCGTGTGGTGCCACGCCCTGACCCGCGACAACGTTGCGGCGTTGCGACGTCCGCAGCGCGCGATTGCGGTCAGGGCGGTTCGTGGATACCGCACCGTCTCGTTTGAGGCGGCGTGCGTGCTAGCTGGGACGCCTCCCTGGGACCTGGAAGCGGAGGCGCTCGCTGCGGATTACGCGTGGCGATGCGATCTCCGCTCCAGGGGGGAGCCGCGTCCCGGGGCGGCGGAAGTTCGAGCGCGGAAGCTTCAATCTCGGCGTGCCGTGCTCGAGGCGTGGTCTCGCCGCCTGGCGGACCCCGCCTACGGGCGACGGACCGTCGAGGCGATCCGCCCGGTCCTCTCGGAATGGGTGAATCGCGACCGAGGACGTCTCACCTTCCGGGCGACACAGGTGCTCACGGGACACGGCTGTTTCGGTCGCTACCTGCACCTCGTCGCCCGGAGGGAGCCGACGCCGAAGTGCCACCACTGCAGTGGCTGCAACGAGGACACGGCGGAGCACACGCTCGCGTACTGCCCCGCTTTCGTGGAGCAGCGCCGCGTCCTCGTTGCAAATATAGGACCGGACTTGTCGCTTCCGACCGTCGTGGCTACGATGCTCGGCAGCGACGAGTCCTGGCAGGCGATGCTCGACTTCTGCGAGTCCACCATCTCGCAGAAGGAGGCGGCGGAACGGGAGAGGGAGAGCTCTTCTTCCCTCTCGGCGCCGTGCCGCCGCCTTTGCGCGTTCACTGCGAAGAAGGACCCCTTTGTCATGGCGCTGCAATTCCAAGGAGTATCCCTGCAACCTTCCGAGAGTATTGGGATACTTGGGGTCGACATTTCGAGCGATGTCCAGTTTCGGAGTCATTTGGAAGGCAAAGCCAAGTTGGCGTCCAAAATGCTGGGAGTCCTCAACAGAGCGAAGCGGTACTTCACGCCTGGACAAAGGCTTTTGCTTTATAAAGCACAAGTCCGGCCTCGCGTGGAGTACTGCTCCCATCTCTGGGCCGGGGCTCCCAAATACCAGCTTCTTCCATTTGACTCCATACAGAGAAGAGCTGTTCGGATTGTCGATAATCCCGGTCTCACGGATCGTTTGGAACCTCTGGGTCTGCGGAGGGACTTCGGTTCCCTCTGTATTTTGTACCGTATGTTCCATGGGGAGTGCTCTGAGGAATTGTTCGAGATGATACCGGCATCTCGTTTTTACCATCGCACCGCCCGCCACCGGAGTAGAGTTCATCCATACTACCTGGAGCCACTGCGGTCATCCACAGTGCGTTTCCAGAGGTCTTTTTTGCCACGTACCATCCGGCTATGGAATGAGCTCCCCTCCACGGTGTTTCCCGAGCGCTATGACATGTCCTTCTTCAAACGAGGCTTGTGGAGAGTATTAAGCGGTAGGCAGCGGCTTGGCTCTGCCCCTGGCATTGCTGAAGTCCATGGGCGACGGTAA
Protein
MDNCKEKLPQEGTSRSAGGESLRASEQSEARSPSYSGVGNNCQDVGGGSTNRERERIPFVQPERCDSALSLRSTRSSARGYASSGRESPLFLQDSVGRSISRNQAEPRTRRKRKTVQRPATTAPSDSSEVEPAPAKFMAVEEGPVNVVVCSAMERSQELRLTYSIPAATPSVRTDAPRCRTAERTREGEVERLTRSLMEIDPDDPGGKFHVLKEIVSSVASKSGSLKGTYVRALKCVAATLEVYLEAFLQRTSTEEVANLRSQLERLHSENGELRMESVRAREELTDMRATLDGVVGCQSNLTIPQPPLEDILQEKDKEIEELKRQITILEARTSKVERARPLLAHERPAPMSSSRGTVAAPAPSKATVTKVGAAPATRALANLAAPVKSASRRVHAQPARPPTAAPAPLQPAKAGSGRSRAKQKKGLNAAKQAQTPQPRPLPSAPSNMNEAWTTVVRRGGRKTQTSLDPRPVLVAAAPQTMGREAARTKKKGRKSRKPRAPRSAAVVLELLPAAKEKGFTYGEVMARARCSVDVDAIGVEGGIRVRHTANGARLLECPGADSGAAADRLAARLREVLPDPEVVRIERPVKMAEIKVTGLDECATQMEVAAAIASQGNCALAQVKVGELRSCYSGAFTVWARCPVQAATLLATPAQGRPADSPGRLRVGWVIAHVQLQEARPWRCLRCFGTGHGLAKCPSAVDRSGLCFRCCQPGHKAASCTAATPHCVLCDAAKRRADHRAGGPACLSAPSSTKRRRGGKKKKKSEEEPAACETAGPSVPAAAVGPQGGTEDEGAMDDLLVHTMAEWFIDIAIVAEPYFVPSDREDSWAGDVDGSVAIVMRQSAALPPLGMVARGSGYVVVRVDETVVIGVYFSPNRSLAEFEQFLGGLEALVHRFESRPVILAGDLNAKCTAWGSPRTDSRGEFLSEWAFATGLCLLNRGSVATCVRWNGESHVDVSFASPSAARRVCGWRVLEGAETLSDHRFVRFELSVSTSLNAPAEDARGEEELPRSAPRSFPRWALKRLNKVLAVEAATVAAWAPMPARLVDVELEAEWFRGTMRRVCDAAMPRVSGRAPRGGAYWWTPEIALLREECVRARRRSARHRRRRLRDADFAEVATRLHADCRQKQEALRRAIGEAKSQSMKTLLETLDQDPWGRPYQTVRKKLRPWALPVTERLQPQQLREIVSGLFPRMERGFEPPSMGAPPRSSVSGDAPAEVVPPSISEEEIRAAVSRMRRKDAAPGPDGVHGRVWDLAFGALGDRLVRLYEACLESGRFPKQWKTGRLVLLRKEGRPADSPAGYRPIVLLDEAGKLLERVVAARIVQHLTGVGPDLSAEQFGFREGRSTIDAVMRVRALSDEAVGQGGVALAVSLDIANAFNTLPWSVIAGALEYHGVPAYLRRLIGSYLEDRSVVCTGHGGAVLRFPVQRGVPQGSVLGPLLWNIGYDWVLRSALSAPLPGLSVVCYADDTLVVARGRDLRESARLSCAGVAFVIGRIRRLGLEVALDKSQALLFHGARRAPPQGAHLVIGGVRVEIEATGLRYLGLVLDGRWSFRAHFERLGPRLMAAAGSLSRLLPNVGGPDLVVRRLYTGVVRSMALYGAPVWCHALTRDNVAALRRPQRAIAVRAVRGYRTVSFEAACVLAGTPPWDLEAEALAADYAWRCDLRSRGEPRPGAAEVRARKLQSRRAVLEAWSRRLADPAYGRRTVEAIRPVLSEWVNRDRGRLTFRATQVLTGHGCFGRYLHLVARREPTPKCHHCSGCNEDTAEHTLAYCPAFVEQRRVLVANIGPDLSLPTVVATMLGSDESWQAMLDFCESTISQKEAAERERESSSSLSAPCRRLCAFTAKKDPFVMALQFQGVSLQPSESIGILGVDISSDVQFRSHLEGKAKLASKMLGVLNRAKRYFTPGQRLLLYKAQVRPRVEYCSHLWAGAPKYQLLPFDSIQRRAVRIVDNPGLTDRLEPLGLRRDFGSLCILYRMFHGECSEELFEMIPASRFYHRTARHRSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVFPERYDMSFFKRGLWRVLSGRQRLGSAPGIAEVHGRR

Summary

Uniprot
NA  
ProteinModelPortal
NA  
PDB
1WDU     E-value=1.23539e-08,     Score=149

Ontologies

KEGG
105841441    no KO assigned | (RefSeq) uncharacterized LOC105841441
GO
GO:0003676   GO:0008270   GO:0015074   GO:0005515   GO:0031032   GO:0030060   GO:0019752   GO:0016491   GO:0016295   GO:0016296  

Topology

Length:
2081
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00201
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00003
outside
1  -  2081
 
 

Population Genetic Test Statistics

Pi
118.658592
Theta
129.144565
Tajima's D
0
CLR
3.512229
CSRT
0.371381430928454
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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