Silkworm Genome Informatics Database

Gene

KWMTBOMO07124

Pre Gene Modal

BGIBMGA013783

Annotation

AF461149_1_transposase_[Bombyx_mori]

Location

Bomo_Chr12(+):5552403-5553584 View in EpiBrowser

Location in the cell

Mitochondrial Reliability : 1.407 Nuclear Reliability : 1.564

CDS

ATGGAGTGGACGCTTAAAGAAAACCGTGTTGTAGTTATTGCGTTGCATCGTTGCGGTTACGCGCCAATTCAAATTTTTAACATACTGAAAAATTTGAATATAACCAAAAGATTCGTTTATCGTACCATCAAACGATACAATGAAGACTCTAGTGTAGATGACAGGTCAAGAAGTGGTCGCCCTCGGTCTGTTAGGACTCCAGCAGTGATAAAAGCTGTGAAGGCGCGAATTCAAAGAAATCCCAAACAAGAGAGCTACAACAAACAAAATGATAAGGTGTACGCACACAGTAGTGAAGAAGCGAGCAACCGTATTCTGCGTGTCCAACGAGGTCATTTTCCATCCTCGCTCATGGTATGGTTGGGAGTTTCTTATTGGGGCTTAACAGAGGTACATTTTTGTGAGAAAGGTGTAAAAACGAATGCAGTTGTGTATCAAAATATAGTCCTGACGAATCTTGTGGAACCTGTTTCTCATACTATGTTCAATAACAGGCACTGGGTATTCCAACAAGATTCGGCGCCAGCTCATAGAGCGAAGAGCACACAAGACTGGCTGGCGGCGCGTGAAATCGACTTCATCCGGCACGAAGACTGGCCCTCCTCCAGTCCAGATTTGAATCCGTTAGATTACAAGATATGGCAACACTTGGAGGAAAGGCGTGCTCAAAGCCTCATCCCAATTTGGAGTCACTCAAGACATCCTTGA

Protein

MEWTLKENRVVVIALHRCGYAPIQIFNILKNLNITKRFVYRTIKRYNEDSSVDDRSRSGRPRSVRTPAVIKAVKARIQRNPKQESYNKQNDKVYAHSSEEASNRILRVQRGHFPSSLMVWLGVSYWGLTEVHFCEKGVKTNAVVYQNIVLTNLVEPVSHTMFNNRHWVFQQDSAPAHRAKSTQDWLAAREIDFIRHEDWPSSSPDLNPLDYKIWQHLEERRAQSLIPIWSHSRHP

Similarity

Belongs to the TGF-beta family.

Uniprot

A0A3S2LTJ6 A0A3S2M6X4 A0A3S2NF68 A0A3S2LXK8 A0A3S2LQG1 A0A0C2GWR6 + More
E3M065 A0A226DSX5 A0A183FT12 A0A3P7ZBK4 E3ND45 H3EZH8 A0A3S2NQU1

Pubmed

18806794

EMBL

RSAL01000012 RVE53510.1 RSAL01000022 RVE52367.1 RSAL01000063 RVE49524.1 + More
RSAL01000133 RVE46339.1 RSAL01000470 RVE41612.1 KN728607 KIH63514.1 DS268420 EFO87874.1 LNIX01000012 OXA47934.1 UZAH01027002 VDO87649.1 DS268606 EFO93488.1 RSAL01000009 RVE53890.1

Proteomes

UP000283053 UP000008281 UP000198287 UP000050761 UP000005239

Pfam

PF00019   TGF_beta        + More
PF13358   DDE_3
PF00292   PAX

Interpro

IPR001839   TGF-b_C        + More
IPR029034   Cystine-knot_cytokine
IPR017948   TGFb_CS
IPR015615   TGF-beta-rel
IPR009057   Homeobox-like_sf
IPR036388   WH-like_DNA-bd_sf
IPR038717   Tc1-like_DDE_dom
IPR001523   Paired_dom

SUPFAM

SSF57501 SSF57501 + More
SSF46689 SSF46689

Gene 3D

2.10.90.10 1.10.10.10

ProteinModelPortal

A0A3S2LTJ6 A0A3S2M6X4 A0A3S2NF68 A0A3S2LXK8 A0A3S2LQG1 A0A0C2GWR6 + More
E3M065 A0A226DSX5 A0A183FT12 A0A3P7ZBK4 E3ND45 H3EZH8 A0A3S2NQU1

PDB

5CR4 E-value=2.96009e-07, Score=128

KEGG

101740752 no KO assigned | (RefSeq) aldo-keto reductase AKR2E4-like

GO

GO:0005576 GO:0008083 GO:0003677 GO:0006355 GO:0007156 GO:0016020 GO:0005886 GO:0007155 GO:0030060 GO:0019752 GO:0016491 GO:0016295 GO:0016296

PANTHER

PTHR11848

Subcellular location

Secreted

Length:

235

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.858

Exp number, first 60 AAs:

1.3538

Total prob of N-in:

0.14978

outside

1 - 235

Pi

81.998984

Theta

76.363393

Tajima's D

0.106354

CLR

0.326797

CSRT

0.39738013099345

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree