SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO07123
Annotation
endonuclease-reverse_transcriptase_[Danaus_plexippus]
Location in the cell
Nuclear   Reliability : 2.962
 

Sequence

CDS
ATGGAAGAAGTTTTAAACACGCTAATTTCAATAAAAAAAGAACTGGAAGAACAAAGAATTGAAATTAGAGAAACTGGAAAAAATGTTACGGAAAAAGTTACACAAAATATTACTAGTATATTCGAGGAGAAATTTTTGGTCTGGGAAGGAAAACTTGGAGAAATGAAAGAAAAAGTGGAAAATCAAGAAAAAAGAATTCATTACCTGGAAAAACAAACAAGAGTAAGAAACTTAGTATTTTTCGGTATCGAGGAAAACGAAACATCATACAAGAGTTTCGAAGAAAATATAATTAAATGGATTGAGCAATATTTCTCTATCAAACTAACCTACAGCGACATTCAAGAGATAAAAAGACTGGGAAAGAAACAAGAGAGACCACGTCCAACTGTTGTAACTTTCACTACACTAGGAATAAAAATCGAAATATTTAAACAAAAAAGAGCGCTGAAAGATACACAGTACTATATGAAAGAAGACTTCCCCAAATATGTACTTGAAAAAAGAAAGGCACTACAGGAACAACTGAAATTAGAGAGGGAAAAGGGAAATACAGCTATACTCAAATATGATAAACTAATTGTATCAAAATACCAAAGTAAAAGAAAATACCGGTCATCTCCAGACAATACCCCACAAATCAATATAGACAAGTATACTCAGGCTAGTAAAAAAAACAAGACAAAGCAGATTGGCAAGACAGTCACTAGGTCAAATAGTATCACAGAAGGAGTCATAAAACCTAGCATGCTCAACTTCTTAGTTAACAAAAATACAATCAAAACTAACAACAACCAAGAAAGTAACAGCGAGAATATATAG
Protein
MEEVLNTLISIKKELEEQRIEIRETGKNVTEKVTQNITSIFEEKFLVWEGKLGEMKEKVENQEKRIHYLEKQTRVRNLVFFGIEENETSYKSFEENIIKWIEQYFSIKLTYSDIQEIKRLGKKQERPRPTVVTFTTLGIKIEIFKQKRALKDTQYYMKEDFPKYVLEKRKALQEQLKLEREKGNTAILKYDKLIVSKYQSKRKYRSSPDNTPQINIDKYTQASKKNKTKQIGKTVTRSNSITEGVIKPSMLNFLVNKNTIKTNNNQESNSENI

Summary

Pfam
PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
Interpro
IPR004244   Transposase_22        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR027124   Swc5/CFDP2       
IPR001680   WD40_repeat       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR011990   TPR-like_helical_dom_sf       
IPR036322   WD40_repeat_dom_sf       
SUPFAM
SSF56219   SSF56219        + More
SSF50978   SSF50978       
Gene 3D

Ontologies

Topology

Length:
273
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00393
Exp number, first 60 AAs:
0
Total prob of N-in:
0.01418
outside
1  -  273
 
 

Population Genetic Test Statistics

Pi
220.205075
Theta
126.022309
Tajima's D
2.401617
CLR
0.05502
CSRT
0.936703164841758
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Copyright@ 2018-2023    Any Comments and suggestions mail to:zhuzl@cqu.edu.cn   渝ICP备19006517号

渝公网安备 50010602502065号