Gene

KWMTBOMO07122

Pre Gene Modal

BGIBMGA010542

Annotation

PREDICTED:_cadherin-86C_[Amyelois_transitella]

Location

Bomo_Chr12(+):5440783-5470810      View in EpiBrowser

Full name

Cadherin-86C      

Location in the cell

Nuclear   Reliability : 3.888

CDS

ATGACGTTCGCTTTAGCACTGGTAGTGGTGTTCGCTTGGAGTGTCCATGCTGGCGAGCCTGTTTTCGATCCAAGCACTCTCATGCGGCTAGTGCTGGTACCAGCAGACGCGGCCGTCGGCTCAGTCATTTACCGCGTCAGGGCCTCCGATCCTGATTTTGATTATCCATTGCATTTCGAGCTCATTGGTCAAATGGGTCGCTTAGACATCGGCATCGAGACACTCCCTTGCACACGTTACAACTCCGTGTGCCAAGCCAACGTGATCCTCCTCCGGAGATTGGAGCCAGGACGCTACGTGGACTTCAGGTTGTCGGTCAGAAATACCAGAGGACGAAGCAATCGCATCGCCTGTTCCATAACCGGCACTAATGCGACAACACCAAGGGACACGATTTTCCCTCATCAACCCAGCATAGTGCTAGTACCTGAGGATGCGAAGCGTGGTACAGAACTCGAGATTGTTATTGCAAGGAAGAACCCCCTGTCACCAAAACCTTTGGAATTGGAGCTCTGGGGTTCGCCTTTATTCGCCATACGCCAACGCAGAGTTTCAACAGAAAACACCGAGGGAACGATATTTCTGATTGGACCGCTCGACTTCGAAGCGCAATCGATGTACCATTTGACACTCCTGGCCGTGGACCCATACATCGAAGTGGGGAAGGATACGCGGAATATTGCCGGCCTAGAAGTAGTCGTCGTAGTTCAAGACGTACAAGATATGCCGCCAGTATTTACTTCAGCACCTCCAATAACACATTTACCCAAACAAGTTGGTCCGGGTGATATGATAGTGAAAGTTCGAGCTGAAGACGGAGACAAGGGCGCACCTAGGCAGATCAGATACGGCTTAGTGTCTGAAGGGAACCCATTTACGCCATTCTTTAACATCAATGAAACTTCAGGCGAAGTGACTCTTGAACGCCCAATTGAGGAGATAGCGGCGATTTCTCATGCCGGTGCACCAATCTTATTAACAGTGGTCGCCGAAGAAGTAAGGCTGTCTCGAGAGGAACCCGAAGCGATGTCTTCCACTGTACAGCTTGCCTTCATTCTACCTGAACGAGATAATTCTCCTCCGTACTTTGAAAATCAATTTTATATAACTTACCTGGATGAGAACGCACCCCAGGGAACGGCACTTGTATTCAACGACCCCTACATTCCGCAAGTTAACGACAACGATGCCGGTAAGAATGGTGTCTTCGCACTATCTCTCGTCGGCAATAATGGGACCTTCGAAATATCACCGACCGTTGCAGAGAGACACGCGCAATTCCTCATCAAAGTACGAGACAATACAATGCTGGACTATGAAGCACGGAAGTCTGTCATATTTCAGATCACGGCTCAAGAATTGGGTCCAGCTACAAATTTATCGGCGACGGCCAATGTAACGGTTTACTTAAATGACGTAAACGATAATCCGCCCGTATTCTTGGCACAATCTTACGACGTGGAACTGCCTGAGAATGTTACTGCGGGAACTAGAGTCGTCCAAGTAGCGGCAGACGATGTAGACACGGGAGCTTTTGGAAAGATCCAATTCACTGCCATATTAGGGTACTTGAACACGTCGCTACATTTGGACCCTTTGTCTGGGTTGATCACCGTTGCGACCAATAATCATGGCTTCGATAGAGAAGCAATGCCAGATTTGCATTTTTTAGTAGAGGCTAGAGACAATGACGGAGTAGGTTTAAGAGTTACTGTGCCATTAATTATTAAGCTATTAGATGTAAACGATAACCCACCAGAATTCGAAAGATCGCTGTACGAGTTTGTCTTATCTCCGACTTTGAACAACTTTACGTCTCAAGCGTTCGTCAAGGCTATAGATAAAGACGCTGAGCCACCAAATAATGTAGTAAGATACGAAATCATTAATGGAAACCTCAACGGTCAGTTTGCTGTCAATGAAGAAACCGGTGAACTGTACTTACTGCAAAAACTAAAAAGAACAAAGAAACAAAATGTAAATAGAAGAAGACGTCAAGCAGACTCTCAACAGGAGAGCGACGTTTACGTTCTGAATGTGCGAGCTTACGACCTCGGAGTTCCGAGATTATTCTCTTCGACTTTGGTGAAAATCTATCCTCCGGAAAGCAAAACAAGGACAATGTCATTTATAGTGCCCGGGGCTGATCCCGATAGAAAAAAATTAGAAGAGGTTCTCAGTACTCTGTCCGGAGGAAAAGTCACGATAATCGATATCAAACCATATACAGGAGGCGATGGTGCTGCGACAGATTTAAGCGGCCGAGAATCTCAAGAGAAAAGTGAAGTGGTGGCCATAGTACATACAACCGGAAGTACTGCAATCAATGTCGCAAAACTCCAAGAGCAGTTAGCAAAAAATATGACAATATACACAACTGGCACTAGTTCTAGTAACGGTATTACCAATACAGGAAGTAATAATGAAAACGGTCAAGCATCCGATGATAGTGCAGATTCGAGTATATACAAAGCAGAGAGCCGCCTACTTTTCTGGCTCTTGATACTTTTAGCTATACTAGTAGCTCTGGTACTATTACTATTAATATGCTGCTGCATTTGTGAAGGATGCCCACTTTATATGCCTCCTAGCACAGCTTTGTCACAGTTTATTAGGAAAAGAGTGATACGTGTCAACTCCACAGAAGACGACGTGCGTTTAGTGGTCCGGGACAAGGGACTTGGGAGGGAAAACAAGAACCAAAACATAGAGAATAAATCAATTCAAGCAACAGAATGGAGAAAGAGGGAAGCGTGGAGTGCAGAACAAGCAGACTTGAGGACTAAACCAACACAATGGAAATTCAATAAAAGAAATTATCGTGCAAAAGGACCGTCTAAGCCGTCTTCGACTCCTGGTGGTGATATACGTCAAGAATTTGTTCACGCTGCAGCTGACAATGATTACAAATACGACGGACAGCAATCGTTTCGTATGAGAGAGGGACCAAACATTATCTACACAAAAGAGATGCAGATCGAACAAGCTTTCACAAATAAACACAAAGAGTATATAGATGATCTAGAAAATGGCTACGATAGAATTGCTACTTTACATCACAACAGAAGGGATCAAGATAACGATTCAATGCGTAGGCATGAAATAGATAGAGGTTCTGAAGTCGACGTTTATCTTAAAGATGGTGAAGAAAGAGAAAAAAATGAAAAACAAAAGCAAAGTTTTCAAGACAAAGCACATGCTCAATCCTCAATGGGTCGAGATCAATATTTTATAAAAGAAGGTAACACTGAAATTCTTCGTTTAGTGACTAGAGGTAAAAATGAAGAAGAAACATATGTTAATTTACCAGGTCATCAACAAAGACCGGTTACGTTAATACCTCACACTCAATATGTTGTGGTAGATAGTGGTAAAAATTTACTATTAGAAAGATTCATTAGAGAACAAGGCGAGGAAGCAAAAAGCATGAGAGAAAGAATGGAAAAGGTAACGGATTTAGATAATGTATCTATGGGAAGAGATGCCAAAAGTATCGGTCATGTTTCGGGAGCAGCTGAGGTTACTCATCACTTTCATGACTATTCAAATATACCTCCTGATGTCCCTGGCGCGGTCCCAAAAGATAATTATTTCCAGTCAGCTCTACTTCAAATGCAAAACAAATCAACAATTCATCAAGAGCTCTTAGAGTCATCGCTTCGAAAGCAAAATGAACTATTACATCAAATTTTAATCGAACGCGAAAGAATTTTACAGAATCATGAAACCGCTTCCCAAGTTGAAAATAAATTAGAAACTCAGAGCTTACCGGGCCACTCCGTAATGGCAACCCAAACTGAATGTCATATTGGAACGCAAACTGAACCACAACTTCTACAATCAACCAGGCGAAAAGCTAGAAGTGACAACGATTCCTACAGTGAAGATGAGTCACAGATAGCATTACAAGATGATCCTAAAAGTATAGCTTGGGTTAAAAGAAAAAAACCTAAAAAAAAGCTACGACATAAAGACCCAAGACGAAGTATACGAATCTATGATTTAAGGAGAAAAATTAAAACGCCGATTTACGAAGAAAGTGAAATATCTCCGTCATTAGAAAGTGAGAAATTCGTTAAAATAAGTAAAACTAATGAAAGAGAAGAACACATTAAAAATTACGGCGACGTTACCAAAAGCTTTATAACAACCTCGAAAAATGAAACAGTTTGTTCTACACAAATCAAAATCTCTGATATTGATAAAAAACCGAATTTAAGAAAAGAAGTTTTAATGGAAATTTCAGACTCGTTGGATGAGAAAATCGATTCGGATTTAAGCGAAAAACGTCTGCGATTGCAAAGACAGGCAGCGCAGCATGAAGATGATACTGGTAGTTCAAAGCTCAAGCTTTCACTCAGTCCCGAGGAAAACAATAAAAGTAGAAGCAGTTCTGCCTCTAAAGATGAAAGAAACAAAGTTTTTTCAAGACAAGGTTCATCGACCGAAGCTCGCGAAGAAGCAGAGCTCTCGGCAAGAATTAAAACACCAGAACTTGGTGAATCGTCGTCACAGAGAAAAACTACAAACAGCAATGAGTCTGGTATAAATGACAAAAAGAAAGCAGTGGAAGAAACAAGTAAAACATCCGACAGCAAAACTTCACAAAAAAGTTTACCTCGCTATATGCAATGGTACGGGAAAAAGTCCAGCGCCACATCCAAAGCCACTGCCCCTGAAAAAGTAATACCGAACAAACCAAAAAGAATATCGAAAATTAAGACTGACCAAGATGAAAAAGATCGTTCCGGTAGGTACGGAAAAATTTTAAGCAAAGAAACCCACAGTGACAACGCAGAGCTAAAAAAAAACTCCAAAGGAAAAGAAAGTGAATTCATTCATCCGCGAATCTTAAAAGAAGGTAAGGTGACTCCTGTGCCTGAAGGTCCGCTTCCAGATGCGCACCCACTCTTACAACATTCCGAACACAGATATGAACGTCAATACGAAAACCAGAATCCACTGTGTCACGTTCAACAAACACACATTCCAAAATACTTCGGACAACACAACGTTCCAATATTACCTCCAAGACAATCTGTAGAACAGCCGATATACGTGAATCAAGACGACGTCAAAACAAAGGTGATTAACCAAGACATTGCAGAAAGTGCGTTAACTCACAGTATTTCAATATCTACGAACTATGACGAAGATCGAAAAATTTCTTCCGAAGTACATGTATCTAAAGTTAACATTGGAGGAGATTTGGATCTCCAGCCAAGAAATATTACTGCCTTGGACGACAATGACTCTGGGATCGCAATGAACACATTAGTTCAACACGCTGGTAATTTCAAAAGACTACCCATCACTGAGAAAAAAAGCGTTTTTACTATAGCCTATGACGATGTTCAAACCAACAATAAACAACTAAGACCAGATAGCAGCTCCACGTCTTACTGA

Protein

MTFALALVVVFAWSVHAGEPVFDPSTLMRLVLVPADAAVGSVIYRVRASDPDFDYPLHFELIGQMGRLDIGIETLPCTRYNSVCQANVILLRRLEPGRYVDFRLSVRNTRGRSNRIACSITGTNATTPRDTIFPHQPSIVLVPEDAKRGTELEIVIARKNPLSPKPLELELWGSPLFAIRQRRVSTENTEGTIFLIGPLDFEAQSMYHLTLLAVDPYIEVGKDTRNIAGLEVVVVVQDVQDMPPVFTSAPPITHLPKQVGPGDMIVKVRAEDGDKGAPRQIRYGLVSEGNPFTPFFNINETSGEVTLERPIEEIAAISHAGAPILLTVVAEEVRLSREEPEAMSSTVQLAFILPERDNSPPYFENQFYITYLDENAPQGTALVFNDPYIPQVNDNDAGKNGVFALSLVGNNGTFEISPTVAERHAQFLIKVRDNTMLDYEARKSVIFQITAQELGPATNLSATANVTVYLNDVNDNPPVFLAQSYDVELPENVTAGTRVVQVAADDVDTGAFGKIQFTAILGYLNTSLHLDPLSGLITVATNNHGFDREAMPDLHFLVEARDNDGVGLRVTVPLIIKLLDVNDNPPEFERSLYEFVLSPTLNNFTSQAFVKAIDKDAEPPNNVVRYEIINGNLNGQFAVNEETGELYLLQKLKRTKKQNVNRRRRQADSQQESDVYVLNVRAYDLGVPRLFSSTLVKIYPPESKTRTMSFIVPGADPDRKKLEEVLSTLSGGKVTIIDIKPYTGGDGAATDLSGRESQEKSEVVAIVHTTGSTAINVAKLQEQLAKNMTIYTTGTSSSNGITNTGSNNENGQASDDSADSSIYKAESRLLFWLLILLAILVALVLLLLICCCICEGCPLYMPPSTALSQFIRKRVIRVNSTEDDVRLVVRDKGLGRENKNQNIENKSIQATEWRKREAWSAEQADLRTKPTQWKFNKRNYRAKGPSKPSSTPGGDIRQEFVHAAADNDYKYDGQQSFRMREGPNIIYTKEMQIEQAFTNKHKEYIDDLENGYDRIATLHHNRRDQDNDSMRRHEIDRGSEVDVYLKDGEEREKNEKQKQSFQDKAHAQSSMGRDQYFIKEGNTEILRLVTRGKNEEETYVNLPGHQQRPVTLIPHTQYVVVDSGKNLLLERFIREQGEEAKSMRERMEKVTDLDNVSMGRDAKSIGHVSGAAEVTHHFHDYSNIPPDVPGAVPKDNYFQSALLQMQNKSTIHQELLESSLRKQNELLHQILIERERILQNHETASQVENKLETQSLPGHSVMATQTECHIGTQTEPQLLQSTRRKARSDNDSYSEDESQIALQDDPKSIAWVKRKKPKKKLRHKDPRRSIRIYDLRRKIKTPIYEESEISPSLESEKFVKISKTNEREEHIKNYGDVTKSFITTSKNETVCSTQIKISDIDKKPNLRKEVLMEISDSLDEKIDSDLSEKRLRLQRQAAQHEDDTGSSKLKLSLSPEENNKSRSSSASKDERNKVFSRQGSSTEAREEAELSARIKTPELGESSSQRKTTNSNESGINDKKKAVEETSKTSDSKTSQKSLPRYMQWYGKKSSATSKATAPEKVIPNKPKRISKIKTDQDEKDRSGRYGKILSKETHSDNAELKKNSKGKESEFIHPRILKEGKVTPVPEGPLPDAHPLLQHSEHRYERQYENQNPLCHVQQTHIPKYFGQHNVPILPPRQSVEQPIYVNQDDVKTKVINQDIAESALTHSISISTNYDEDRKISSEVHVSKVNIGGDLDLQPRNITALDDNDSGIAMNTLVQHAGNFKRLPITEKKSVFTIAYDDVQTNNKQLRPDSSSTSY

Description

Cadherins are calcium-dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells (By similarity).

Keywords

Calcium   Cell adhesion   Cell membrane   Complete proteome   Glycoprotein   Membrane   Metal-binding   Reference proteome   Repeat   Signal   Transmembrane   Transmembrane helix  

Feature

chain  Cadherin-86C

Uniprot

A0A194R5E9   A0A194PP17   A0A212FPL9   A0A2A4JWD7   W8AQ69   A0A0R1E2B6   + More
A0A0R1E3R0   A0A1I8N8Q2   A0A1I8N8Q1   B4M5I7   A0A0M5J0H2   A0A0Q9W9T1   A0A1W4VG84   A0A1W4VFX9   A0A0Q9W0H3   Q9VGW1   A0A0B4K655   A0A1J1HIK9   A0A0B4K6E3   A0A0A1WED2   B4NJY8   A0A0P8YDR5   A0A0A1WGF4   A0A1I8NT94   A0A1I8NT98   A0A1I8NT99   B4KC93   A0A0P8ZY96   A0A1I8NT97   A0A336M3Y0   A0A034VM16   A0A182MS56   A0A3B0KAT2   A0A182W532   A0A0R3NHT4   I5AP47   A0A1B0CI24   B5DVI5   A0A182Y535   A0A0B4K720   A0A1A9UX43   A0A2J7QNR1   A0A1B0FQS3   A0A158NZ57   A0A195CVZ1   A0A195AZA3   A0A151IT89   A0A195F6C9   A0A1I8NTA2   A0A2P8YIP2   K7IYP2   E2A653  

Pubmed

26354079    22118469    24495485    17994087    17550304    25315136    + More
18057021    18539010    10731132    12537572    12537569    17113384    12537568    12537573    12537574    16110336    17569856    17569867    25830018    25348373    15632085    25244985    21347285    29403074    20075255    20798317   

EMBL

KQ460883    KPJ11091.1    KQ459603    KPI92870.1    AGBW02002231    OWR55650.1    + More
NWSH01000479    PCG76096.1    GAMC01019927    JAB86628.1    CM000160    KRK03404.1    KRK03405.1    KRK03406.1    CH940652    EDW58913.2    CP012526    ALC47706.1    KRF78592.1    KRF78593.1    KRF78595.1    EU707853    AE014297    AY113374    AFH06349.1    CVRI01000006    CRK87888.1    AFH06351.1    GBXI01017492    JAC96799.1    CH964272    EDW83990.2    CH902617    KPU79643.1    GBXI01016717    JAC97574.1    CH933806    EDW13702.2    KPU79642.1    UFQT01000524    SSX24974.1    GAKP01015428    JAC43524.1    AXCM01000006    OUUW01000007    SPP83209.1    CM000070    KRT00583.1    EIM52732.2    AJWK01012994    AJWK01012995    AJWK01012996    AJWK01012997    AJWK01012998    AJWK01012999    AJWK01013000    AJWK01013001    EDY68162.2    AFH06350.1    NEVH01012563    PNF30221.1    CCAG010015267    ADTU01003876    KQ977220    KYN04846.1    KQ976701    KYM77289.1    KQ981029    KYN10183.1    KQ981768    KYN35941.1    PYGN01000567    PSN44130.1    GL437108    EFN71112.1   

Proteomes

UP000053240    UP000053268    UP000007151    UP000218220    UP000002282    UP000095301    + More
UP000008792    UP000092553    UP000192221    UP000000803    UP000183832    UP000007798    UP000007801    UP000095300    UP000009192    UP000075883    UP000268350    UP000075920    UP000001819    UP000092461    UP000076408    UP000078200    UP000235965    UP000092444    UP000005205    UP000078542    UP000078540    UP000078492    UP000078541    UP000245037    UP000002358    UP000000311   

PRIDE

Q9VGW1   

Pfam

PF00028   Cadherin

Interpro

IPR002126   Cadherin-like_dom        + More
IPR015919   Cadherin-like_sf       
IPR020894   Cadherin_CS       

SUPFAM

SSF49313   SSF49313       

ProteinModelPortal

A0A194R5E9   A0A194PP17   A0A212FPL9   A0A2A4JWD7   W8AQ69   A0A0R1E2B6   + More
A0A0R1E3R0   A0A1I8N8Q2   A0A1I8N8Q1   B4M5I7   A0A0M5J0H2   A0A0Q9W9T1   A0A1W4VG84   A0A1W4VFX9   A0A0Q9W0H3   Q9VGW1   A0A0B4K655   A0A1J1HIK9   A0A0B4K6E3   A0A0A1WED2   B4NJY8   A0A0P8YDR5   A0A0A1WGF4   A0A1I8NT94   A0A1I8NT98   A0A1I8NT99   B4KC93   A0A0P8ZY96   A0A1I8NT97   A0A336M3Y0   A0A034VM16   A0A182MS56   A0A3B0KAT2   A0A182W532   A0A0R3NHT4   I5AP47   A0A1B0CI24   B5DVI5   A0A182Y535   A0A0B4K720   A0A1A9UX43   A0A2J7QNR1   A0A1B0FQS3   A0A158NZ57   A0A195CVZ1   A0A195AZA3   A0A151IT89   A0A195F6C9   A0A1I8NTA2   A0A2P8YIP2   K7IYP2   E2A653  

PDB

5SZR     E-value=2.17914e-22,     Score=267

KEGG

101738491    no KO assigned | (RefSeq) cadherin-86C

GO

GO:0005509   GO:0007156   GO:0005886   GO:0016021   GO:0035003   GO:0044331   GO:0016339   GO:0008360   GO:0005887   GO:0016020   GO:0007155   GO:0030060   GO:0019752   GO:0016491   GO:0016295   GO:0016296  

Subcellular location

Cell membrane  

SignalP

Position:   1 - 17,         Likelihood:  0.994122

 

 

Length:

1801

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

35.3174000000001

Exp number, first 60 AAs:

1.45267

Total prob of N-in:

0.10098

outside

1  -  1801

 

 

Pi

206.452655

Theta

162.439008

Tajima's D

0.847276

CLR

0.004412

CSRT

0.613169341532923

Interpretation

Uncertain