SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO07119
Pre Gene Modal
BGIBMGA010414
Annotation
PREDICTED:_uncharacterized_protein_LOC101743084_isoform_X1_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 4.191
 

Sequence

CDS
ATGGGCTCAAACATCAGCCAGCACTCTTCTAAAGGGCTCAAAGGCAGGCGGGCGCGGTCCAGCGGTGATCTCTGCAATGGTGACAGCAAAAGCCAAACGGAATCGTCGGTATGCGGTTCCGTCGTCGGAGACGTTATGGGCTGGAATCGATCTCTGCCCAACCATCTGGATGGAAACCGCCATTTAGCAGATTACAGTCGAGTCAACAATAATTACGGAGATTTCGGGACGTACAACCGCGGACATCCGAAGGGAGGACGTGGACTAAGATATAGGGTCAGCAAATCTGGTTCTGATGCTGAGCCAGTCTGGAAGCTTCAAGATCCTGGCTTCGACCAGGGCTACGCCTCAGAACGATCGCCTGAAGATGACTACCTTCCGCCCATCGCTCCTGCTGTCTCCCTTGAAGCTTATGAGGCTGAACTGCGCGCAATTTACCCTTTCATCACCGATGAGAACTCGTTCACGGTCGTGGTGGAAAAGGACGGACGTGGGCTGGGAATGTCGGTGTGTGGCGGTGGAGGTCTAGTCAGGATACGAAGGTTATATCCTCCTCAGCCCGCGTGGAGAACTGGTAGACTCGCTCCTCGAGATCTGCTGCTGTCAGCCAACGGCGTACCATTAGCTGGACTGAGTACTTACGAAGCCTTGGAAGTGCTACGTACGGCGGCGCAGCGCGTTGAGCTTCGGGTCTGCCGACCGCCTGCTGACGTGCTTGAAAGCGTCACGCCCCCCGAACCACCTACCCCGCCGGCGCGGACTCCTCACCCACCGCACCTGCCGCCACTGGACCCTCTCAACTGTCATCCTATGCACGCAAGGTTATCTCAGACAACAAGCAGCGCCACAACTTCGTCATCGGAAGGGAGGGGACGGCGCGAGGCTAGTCCGGAGCAACACCGGCGCGACCTCCGCCTGCCGGACCTCGATCGACCCCTTCCTGTCTACGACATACAGTACGGGGAGTTCGATATTGTTATGACAAAAGTTAACGGTTCCCTCGGCTTTACGTTACGGAAGGAAGACCACAGCGCTCTAGGACATTACGTCAGAGCTCTGGTGCGGGAGCCCGCACTTAGCGATGGAAGGATCCAACCCGGGGACCGGATAATAGCGGTGAACGACACGCCAATGTCAAACATGTCGCACGCGGAGGCCGTGGCCTTCCTGCGAGCGTGCGGCACTGACGTGCGACTCCGACTGTACCGCGACCACGCCGCCACGCCCTTATCGCCAATGTCGCCGAAAGAAGATGGACCCACGGACTCAGACACGCCCTTGAATAGACCTAAACCCCCACTAAGGCCTGAAGCGGTAACAATGCTGTGCGACCTTGCCGCGCGTCGTCTGACTCCCGATACCGCGGACGGCTCGCGGTCGCCGTGCCTGTCTCCAAGGAAATTCAGAAAACTAACCAAGGACAACAACCATTATGAACAACCTATAACCGCAGATGCGCCGAGTGCCAACCTAAAGATAGAGACACAGAATACGAAATGCGCAGTAAGCACGATACAGGATTCGGGGCGACCAAACACAGGTCCGGTCGCCGCCGCTCCGCACACTTGTAGAAAGCAAAAGTTGAGCCTGACAGTTCCCCCACATGGCTACGAATTGAACAACTTGGACAACGATACATTGGACGCACCCAATTTGTACCAGGAGAACATGAGCAAGCAAAGGTACGCGGAGTTCCCAGCGGAATCACTCGAGCCGGTTTCGATGCCCGTCATCTCGGAAGAAGCGCGATTCCAACACACCAATCCCGCCTACCAGAGCGCTGTGTTACACGGCGCAGACACCGTAACTAGCGAAGGTCTTAACGATGATGGAAAAGGACTACATAAATGGAAAGGCGTGGCGCTCTCGCCTGATAACGAGAGGAAAGTGAAGACAGAATCAATTCAAAATCAACGCAAACCTCCGATTGTAATCGATGCCGCCCAGAAAGAAAACGTAAAACCCGAGACCACAAATGACGTCACAAACACAGAACCCACGATAGTGACTGTTGAACTAAACCGAGGCTGGAACAGTAGACTCGGCTTCAGCGTGCAGAGCCATCCTGAATCCGGACAGAGCTACATCTCCGCTGTTTACAACGACAGCGTGGCCGCCAGGGACGGCCGCCTTCAGCGTGGAGACGTTATATTACAGGTTAACGATGAAAACGTTACATCAATGAAAACGCCGGAAGTAATCGATTTGCTGAGAATCCTCCGCGGATCTATCTGCATTACAGTTTTGCGGCCACCTAACCCGTAA
Protein
MGSNISQHSSKGLKGRRARSSGDLCNGDSKSQTESSVCGSVVGDVMGWNRSLPNHLDGNRHLADYSRVNNNYGDFGTYNRGHPKGGRGLRYRVSKSGSDAEPVWKLQDPGFDQGYASERSPEDDYLPPIAPAVSLEAYEAELRAIYPFITDENSFTVVVEKDGRGLGMSVCGGGGLVRIRRLYPPQPAWRTGRLAPRDLLLSANGVPLAGLSTYEALEVLRTAAQRVELRVCRPPADVLESVTPPEPPTPPARTPHPPHLPPLDPLNCHPMHARLSQTTSSATTSSSEGRGRREASPEQHRRDLRLPDLDRPLPVYDIQYGEFDIVMTKVNGSLGFTLRKEDHSALGHYVRALVREPALSDGRIQPGDRIIAVNDTPMSNMSHAEAVAFLRACGTDVRLRLYRDHAATPLSPMSPKEDGPTDSDTPLNRPKPPLRPEAVTMLCDLAARRLTPDTADGSRSPCLSPRKFRKLTKDNNHYEQPITADAPSANLKIETQNTKCAVSTIQDSGRPNTGPVAAAPHTCRKQKLSLTVPPHGYELNNLDNDTLDAPNLYQENMSKQRYAEFPAESLEPVSMPVISEEARFQHTNPAYQSAVLHGADTVTSEGLNDDGKGLHKWKGVALSPDNERKVKTESIQNQRKPPIVIDAAQKENVKPETTNDVTNTEPTIVTVELNRGWNSRLGFSVQSHPESGQSYISAVYNDSVAARDGRLQRGDVILQVNDENVTSMKTPEVIDLLRILRGSICITVLRPPNP

Summary

Pfam
PF00595   PDZ        + More
PF17820   PDZ_6
PF16063   DUF4805
Interpro
IPR001478   PDZ        + More
IPR036034   PDZ_sf       
IPR041489   PDZ_6       
IPR032064   DUF4805       
SUPFAM
SSF50156   SSF50156       
PDB
6GBE     E-value=4.2452e-09,     Score=149

Ontologies

Topology

Length:
754
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00331
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00025
outside
1  -  754
 
 

Population Genetic Test Statistics

Pi
226.945015
Theta
174.234883
Tajima's D
0.412781
CLR
0.37618
CSRT
0.489325533723314
Interpretation
Uncertain
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