Silkworm Genome Informatics Database

Gene

KWMTBOMO07109

Pre Gene Modal

BGIBMGA010421

Annotation

PREDICTED:_synaptic_vesicle_glycoprotein_2C-like_[Amyelois_transitella]

Location

Bomo_Chr12(-):4743841-4764731 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.058 PlasmaMembrane Reliability : 2.422

CDS

ATGAAAAAAGATTCCATTATTGTTGAGGCAAAATCAATTTCAGAATGCGGTGATATTGTTAAACATGGTAGGATTTCAGACATTATCACAAATATAGATACAAACGAAGATATAGAAAAACGGCTCATCCTTCCATCCCAAGAAACAAAACTGGAAACTGATAATAAAGTTAAAATCACAGAGCTTGATACAAATGGCTTGAATCGTGCTATCGACGGACTAGTTTTTCCTAAAAGTAAATCACAAACAAATACTGTTAAACCACCAAACACAATCTCAATAGAAAATGCTAATACTAACAATATCTCTTTTTTAAAAGCAGAAGAAATCCCAGCTCAAATTAGTGCAGCAGAAAATATTGGTACCGCCAAATCTGACCAATACAAAACAAAACAAGCCAAAATAGTGAGTGAAATCACAAAACATAAATCACTACAGGATGTCGAACAGGAATCTTTCCAAATCCGTCTCAATAATTACCAAAATATGTTCTCCCAAAATAGTACGACGCCTTCTCAAGATCGAGTGGCAGCTTACCCTGAAATTAGTAAACTTATCGAACCTTATATCGATAAAAATAACGCCAAAAATATGGAGACCAGGAATGATAATTCGAAATCTTCCCCATTTTTCTCCATAAGTAATAGATCGCTTAACCATAACCCGTTTCAGAAAAACTATGATCTTCAAAAGCACCAGATTGAAAATATGTCTTTAGATAAAAAAATGCGATCAGTTGATAATTTGATCGAAAAAGAAAACAATAATTTAATTCAGCACGATAATGAAAATGAATTATCATCAAAATCACGCGATGATATAAAAACAACTGATAATTTCTCGCATAACACTGACCTAGATCAAGATGATTATGATTTGTTACCGTCAACCTTAATCAGTTCAAGTCACGATAGTAAATACGAAATGGACACAACCAATACTTTTACAAACAAGGTTCAATATAGTAGTAAGCGAAGTAAACATTTGGAGTATAAAGACGAGCGTGATCTTAACTTCTCAACATCCCGGGACCTTATGATTAAAAAAGACATACAAATGCAATCTGAGAAACAAAAAGAAAACGAAAGTGTTCTAAAAATATTCCGAAAAGAACTAGAACAAACCAACGTTCCTAATGCTAAAACTATTAGTAATAATATTATCGTAACAGAAGATATTAGTTCGATGAATATAGGAAGTTTTGACGTGCCCGATTCTAAATTAGATAGTGTAGAAACTATCAATAATGAAACTAATGAAATCGAATCGAAAATAGATGTATCTCCAAACCAATCTCATGGAAATGTACGCAAAGATGTTGGAGATTTTAATTTTAACAAAGAATTGAGGAAGGACTTCAAAACGAAAAATCACGAAGAGACTCAAAATACTAAAGTGGAGTTGAAAGGTTCCATACTGGAAATTAATCTAGATTCTGATTCTCAAACTATTGAACAACCATTAAGAGAAACGTCACAAACGAAATACAAAGACAGATATAGCATCGAACCAGATATTTTAAGCAAAATTACAATTCCAAAAAGTAGCACTTCAGTGGAAAACCGACATAATATAGCTGAAAAACAACTTAGAAACGAGAAAAATATTTCCCATAGCCGTCATAAAACAGATAAACCTCACGCTCAAAATGAAGTATTTCACAAAATACAACAAGTAAATGAAAATAATAAATCAGACATCGGTGAACCATTATCTTATCCCAAGCCATCAGCTTCCCTCGCATTAAAAAACGATACATATTTAATGGACTTGGAATTTGCTATTTTTATGAATAACAATAACGAAAAAACTATAAAAACCTTGGATACCTCTCAAACATATGACGAAGATAAAAGCCAGAATCTGGCAACAATAATGATTAAATCACAAATGAGAACGTCTAACAAGGAAATACGATTCCCGGTCGATAGCGAAAACGATTTAATAATCCAAATAAAAAAAACTAGAATCATGAATCAAAAAGTCCAAATTAATAATACATTTGCTCGTGGAGAAGATGTTTTAGAAGAAAACGAAGAGAGTAAGAATGAGACAACAGTAAACAACAATGAAGCTAGCAAATTACAGAATATTTTAAGTTGGATATACAATCACGAATTAGTTCCTTTACAAAACGTTATCAAAGAACTAAAAGACGATATAGATTTTCTTACTGAACAGCAGCAACATAAAGCTAAAATACAACAAGTAAAGAAAACAAAATCTATGAAATTATTAAAATTTACGAAAGATTTAACGGAATTTGTCGAAAATCGTCACAAAAATCCGGTTGATTTGGATCAAGCTTTGGATGTTGTTGGTTTAGGTTGGTATAATTTCAAGTACTGCCTTGTGTTGGCGCTGTTTCTTATCGCTGCAATCATAGAACCGGTTGGATATTCCTTCATTGTTCCTTCAGCAAAATGCGATCTGAACATGACTGATGCCCAGAGAGGCTTTATTTCTTCTGTACCGTATATTGGTATTGTTGTAGCGTCATTCCCTTGGGGTTTTTTAGTAGACACGAAAGGTCGGAAACGTGTTATCATATATGGTTCATTGGCGGCAGGAGGTTTTGGTGTAATATCAGGCTTTATGCCGGAACTAATAAGTTTTACTGTATGCAAATTTATTACTTCACTATGTTTAGCGTGTCCAGCTGCGGCTCCCTATTCGTATATTGGTGAGATTCTCCCGCGAAGGCATAGGGATATCATGCTTTCGATAACAAACGCTTTGCAAATAACAGGATCAGCTTTAGTTCCTCTTTTAGGTTGGTTGATCTTACCCCTAGACTTCAGAATAGACTTCGGGGCATACTACTTTCGATCGTGGCGTCTCTTGGTCATAGTTTATTCACTGTTCTTCATTTTGGCCGCTTTTCTTTTATCGTTCGGCCCGGAAAGTCCCAAATACTTAGTTTCTCAGGGACAAAATGAAGAAGCACTTAAAATATTACAAACAATGTACGCAAAGAACAAAAGCAAATCACCAGAAGATTTTCCTGTTAAACAACTTCAGGTTGCAGATGGCGAACGTGAAAAGATAAGCTTCTTGAAATCCCTCCAAGTGCAGACAATGCCGTTGCTAAAACCACCATATTTGAAATGGTTGTTTTTAAATGGATTTCTATTGTTTGGCATTTTTTCAGTATTAAATGGACTCTATATGTGGGTACCAGACCTTCTAAACCGAGTATTAACTGGAAGCCAGTCAGGGTTAACTGCATGCCAAGTAATCGGTCAAAGATTTAATGAGACAGTAAGCCAAGATGCTGTATGTATTGACACTATTGACTCAATCACTTACATAATCAATTCGATAGCAAGCGTCAGCTGCGCTATAATCGCCGTAGCCGTGAGCAGTACTGTCAAATTCGTCGGAAAGAAGAACTTGCTAATTATTATTTTCTGTTTAATTGGCGTTTTTTGCATACTGATTAATTACATAACCGAAGACATGCTGTTTGCGGTTTTGTTATCATCTGTGCCGATCATGGGGTTGGGCATTGGACCAGTGAATGCCTACGCTGTTGAGATATTTCCGACACAATTGAGAGGAATGGCAGTAAGTTTATCAATGATGTTGGGACGAACAGGTTCTGTCGTAGGAACCAACGTGGCCGGAATATTACTGCGTGCCGCCTGCGAAGCAACTTTTTATCTATTCGGCGGATTACTCTTAGTATGCGGCGGTCTTACGCTCTTGTTGCCAAAATCAAGAGAGGAACATAAACCGAAAACCTCAAAAATAACAAGATTATGA

Protein

MKKDSIIVEAKSISECGDIVKHGRISDIITNIDTNEDIEKRLILPSQETKLETDNKVKITELDTNGLNRAIDGLVFPKSKSQTNTVKPPNTISIENANTNNISFLKAEEIPAQISAAENIGTAKSDQYKTKQAKIVSEITKHKSLQDVEQESFQIRLNNYQNMFSQNSTTPSQDRVAAYPEISKLIEPYIDKNNAKNMETRNDNSKSSPFFSISNRSLNHNPFQKNYDLQKHQIENMSLDKKMRSVDNLIEKENNNLIQHDNENELSSKSRDDIKTTDNFSHNTDLDQDDYDLLPSTLISSSHDSKYEMDTTNTFTNKVQYSSKRSKHLEYKDERDLNFSTSRDLMIKKDIQMQSEKQKENESVLKIFRKELEQTNVPNAKTISNNIIVTEDISSMNIGSFDVPDSKLDSVETINNETNEIESKIDVSPNQSHGNVRKDVGDFNFNKELRKDFKTKNHEETQNTKVELKGSILEINLDSDSQTIEQPLRETSQTKYKDRYSIEPDILSKITIPKSSTSVENRHNIAEKQLRNEKNISHSRHKTDKPHAQNEVFHKIQQVNENNKSDIGEPLSYPKPSASLALKNDTYLMDLEFAIFMNNNNEKTIKTLDTSQTYDEDKSQNLATIMIKSQMRTSNKEIRFPVDSENDLIIQIKKTRIMNQKVQINNTFARGEDVLEENEESKNETTVNNNEASKLQNILSWIYNHELVPLQNVIKELKDDIDFLTEQQQHKAKIQQVKKTKSMKLLKFTKDLTEFVENRHKNPVDLDQALDVVGLGWYNFKYCLVLALFLIAAIIEPVGYSFIVPSAKCDLNMTDAQRGFISSVPYIGIVVASFPWGFLVDTKGRKRVIIYGSLAAGGFGVISGFMPELISFTVCKFITSLCLACPAAAPYSYIGEILPRRHRDIMLSITNALQITGSALVPLLGWLILPLDFRIDFGAYYFRSWRLLVIVYSLFFILAAFLLSFGPESPKYLVSQGQNEEALKILQTMYAKNKSKSPEDFPVKQLQVADGEREKISFLKSLQVQTMPLLKPPYLKWLFLNGFLLFGIFSVLNGLYMWVPDLLNRVLTGSQSGLTACQVIGQRFNETVSQDAVCIDTIDSITYIINSIASVSCAIIAVAVSSTVKFVGKKNLLIIIFCLIGVFCILINYITEDMLFAVLLSSVPIMGLGIGPVNAYAVEIFPTQLRGMAVSLSMMLGRTGSVVGTNVAGILLRAACEATFYLFGGLLLVCGGLTLLLPKSREEHKPKTSKITRL

Uniprot

NA

ProteinModelPortal

NA

PDB

4LDS E-value=0.0281067, Score=92

KEGG

101737870 no KO assigned | (RefSeq) putative transporter SVOPL

GO

GO:0016021 GO:0016615 GO:0003824 GO:0005975 GO:0016616 GO:0030060 GO:0019752 GO:0016491 GO:0016295 GO:0016296 GO:0055085

Length:

1254

Number of predicted TMHs:

11

Exp number of AAs in TMHs:

240.412

Exp number, first 60 AAs:

0

Total prob of N-in:

0.09109

outside

1 - 783

TMhelix

784 - 806

inside

807 - 818

TMhelix

819 - 838

outside

839 - 847

TMhelix

848 - 870

inside

871 - 906

TMhelix

907 - 929

outside

930 - 943

TMhelix

944 - 966

inside

967 - 1036

TMhelix

1037 - 1059

outside

1060 - 1101

TMhelix

1102 - 1124

inside

1125 - 1130

TMhelix

1131 - 1150

outside

1151 - 1154

TMhelix

1155 - 1177

inside

1178 - 1189

TMhelix

1190 - 1212

outside

1213 - 1217

TMhelix

1218 - 1237

inside

1238 - 1254

Pi

47.737611

Theta

147.969519

Tajima's D

-0.905934

CLR

0.89663

CSRT

0.15699215039248

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics