SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO07106  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA010538
Annotation
PREDICTED:_uncharacterized_protein_LOC106130853_[Amyelois_transitella]
Location in the cell
Nuclear   Reliability : 2.876
 

Sequence

CDS
ATGGTATGGTTGCTTTCTGCCGAAGGAGCTTTGCATGCCCCCGAAATTGCGCCAGAAATTCCTGAAATTCCTGTATTCCCGATTCCTGACCTCAACATTCCTCAAACGGAGAATAAAAACCTAACGGAGGATGCGGTGCCTGAGCTCGCAGCGACTGAACCAAAACAAATTCTAGAAATTAGTAATGAACAGCGAGTAATTGATGAAATCGAATTAGAAGAATTAGAAGAACTAGAGCCACAAACAAAAAGACGCAGAATTAAGAATAAGTTAATAGTCGATAAGAAAATAAAACTTGGAGGAAATTTACTTCGCGCTAGAATAGAAAACCCGGCCGTGGAGTTGAGATGCGAGGACAGTTCAGACGACATTATAGAGATCCGTACGCCTTGGGACATACTGTTTCGGACACCGAGTCACGTTGGCGGTAAACCACGATCAAACTTTTCTTTGAAGCTAACAAGACTCTACGTAAGGAACCTGGGGCCGGTTGCTGGAAGACCATACGCTGAGAGAGAAATGGAGGAAGCAATGCAGCGCTCTCGCCGAAGCCGCGTCAGGTCGGTGTTAGAAAGGATCGAAGAAGTAGAGGAGCCACAGCAAGGCGCGCCGCCGCATACAGAGCCGCTACACATCGAGCACGTCACCGAAACTGAAATTAACTTCACGAAAGATATGAACAACACGGAAATTGCCATAGAACAAAATTTGGATATATCTATGTTGCCAACACAAAAAATTGAGGTGCAAGCCCGTAAGAGGGTCCTCGAATGTGAAGCGGTTGAAAGTCCAAAACGTCAACGGTCAATAGGATACGTTTCGTTCAGACAAAGCCAGCAGTTAAGAACAGAAATCACTATGGCTCTACCAGATCCACAAGCTGAAAAGGAAAACGTACCAGATTTCGGACGGCAAGCGACGCCGTCCTCCAGTAAACAAGCTCGGAGGAAAACGATTTTAACAGAAAACATTAGTATTTACAACGAACAACCGAAGGACAGCGAGAGGAGCGTCACGGCCATGCTGCATGAGGTCGGCCTGGCTGACGCGCAGGAGCACCCGGCGGAGCTGCACGCGGCCACCGCGCAGAGACCTCCGAGACCAGCCAGCGGGAGCTCAGAGACACCTCTAGGGAGTCTGGACCGAACTAAAGTGTCGCTAGGGGACTCTGAACAGACAACGGATTCGAAAAGATTTATACGAGACCAGTGGGGTACTGAAGGAACTATGATAAAAATTCTAAAGCATATAAAAGCCGGACTCCTCCCTATTAACGTGACGAGTCTCGTACTCAAAGGGCCGCTCGTTCCCGGATACAAGAAAATAATTGCTGCCCGTTGTTTCGCGTCTTTGCTCAAATTGAAACAACATGGCTTCATCAAGATTATAAAAGATGTAAATACTTTAGAAGTATGCGATATTATGTTAGGATCAAAGTTTGAGTGA
Protein
MVWLLSAEGALHAPEIAPEIPEIPVFPIPDLNIPQTENKNLTEDAVPELAATEPKQILEISNEQRVIDEIELEELEELEPQTKRRRIKNKLIVDKKIKLGGNLLRARIENPAVELRCEDSSDDIIEIRTPWDILFRTPSHVGGKPRSNFSLKLTRLYVRNLGPVAGRPYAEREMEEAMQRSRRSRVRSVLERIEEVEEPQQGAPPHTEPLHIEHVTETEINFTKDMNNTEIAIEQNLDISMLPTQKIEVQARKRVLECEAVESPKRQRSIGYVSFRQSQQLRTEITMALPDPQAEKENVPDFGRQATPSSSKQARRKTILTENISIYNEQPKDSERSVTAMLHEVGLADAQEHPAELHAATAQRPPRPASGSSETPLGSLDRTKVSLGDSEQTTDSKRFIRDQWGTEGTMIKILKHIKAGLLPINVTSLVLKGPLVPGYKKIIAARCFASLLKLKQHGFIKIIKDVNTLEVCDIMLGSKFE

Summary

Pfam
PF12854   PPR_1        + More
PF04825   Rad21_Rec8_N
Interpro
IPR011990   TPR-like_helical_dom_sf        + More
IPR033490   LRP130       
IPR002885   Pentatricopeptide_repeat       
IPR039781   Rad21/Rec8-like       
IPR006910   Rad21_Rec8_N       
Gene 3D

Ontologies

Topology

Length:
481
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.11631
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00067
outside
1  -  481
 
 

Population Genetic Test Statistics

Pi
202.328242
Theta
145.849153
Tajima's D
0.390072
CLR
1.016477
CSRT
0.474626268686566
Interpretation
Uncertain
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