Gene

KWMTBOMO07104  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA010538

Annotation

PREDICTED:_leucine-rich_PPR_motif-containing_protein?_mitochondrial_[Amyelois_transitella]

Location

Bomo_Chr12(+):4645332-4657624      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.552 Nuclear   Reliability : 1.201

CDS

ATGTCGTCGTTGTTGAGATCAACGAAATTCGTTCGGTACTTTACGGGTGCTGCAAGAACACTTATTTTGAATTCTGTGAAAACTGCCGAAGCCAGTGCATTCCTCAACTCTAAAGCCTTAAGTGCTGCTAACAATGTTTTTGTACGAGATTATGCAACAACAAAGAAAACAGAAAGCCTTGACCCTCTGCTTCAGAAATTAGACTCGGAAGTTAGAAGATATGGACGGATCACAAAAAGAGATATTGATGAAGTATTAGATGAAATTCAATCTAAAAATGACATTACTAGCTCACAGTCTCTTCTTGTTATAAGATGTTGTGGTGAACTAGTCCCAGAAGAGCTACCAGAACAAAGAACCTTACTTGTACAGAAAATATGGAGTGTTTTAACAGAAAGAGGAATCGCAATGGACATCTCTCACTACAATGCATTGTTGAGAGTTTACATTGAAAACCAACATCCGTTCTCGCCTGCACAGTTCCTTACAGAACTTGAAAATAAAGGATTACAGCCAAATAGGGTCACCTATCAGAGACTCATGTGGCGTTATTGCCAAGAGGGAGATGTCGAGGGAGCAACCAAAGTGCTAGAAAAGATGAGGGAGCTAAGCATGCCGGTTTCTGAGCCAGTTCTGAACGCTTTAGTCATGGGTCATGCATTCCATGGTGATACTGAAGGAGCTAAGGCTGTATTAGAAACTATGGCAGGAGCTGGTTTGCAACCATCAAACCGTACTTATACTTTATTAGCGTGCGGATATGCAAAACAAGGTGATATTGGGGGTGTCGAAGGCATCCTACAATTAGCTAACGAAAAGGATGCCTACATAACTGATAAGGATATATTAGATATAATCGAACATTTAGCCATTGGAGGACATGAAGACAAAGTAGAAAATCTATTTAAACATCTTCAGAAAAGCATAGGCTACAATCAAGATGTTTGTAACCTTATTCTGAGACTGCTTAACAAAGGACTTGATGAGACCGCAAAGAAAATATTTGCGACTATGCCCAAATCTTCGCATTTCGAAGATAACCTGTTCAAAGGGGCCTTCTTTGTGAGACATTTACTAAGATTGAACAGATCCCCAGACTCTATAATTAAAACATGCAAGGATTTAACTCATGAAGGTCTTGTACCAAATGCAATTTACATTGCAACTGAGGGAGCACTACAATCAGGAAATTGTGAACTAGCTCAGAAGCTATTTAAAGAACTGGTAAACGAAGGTAAAGAAGTTAGACAGCATTACTATTGGCCTTTACTTGTAAAGAAAGGCAAGGAAAAAGATGAAGAAGGTCTCTTGCAAATACTGCGAGACATGTCCACAAATAATATTCCAGCATCAGGAGAGACATTAAGGGATTATGTCATACCTTACTTGACCACAAAAAGTAATGCGCAAAGCGTTATCGTTAAACTTCAAATAGCGAATGTGCCAGTTATACATGCTGCACGTAATGTGATGATTCATCTTCTGGAATTGGGAAAAATAAATGAGGCATCAGAAATAGCGTTGCAATACCGTCCTCGAGGGCAGTACAATTTAGTGGGGCGGCCCTTAGTTAATGCACTCTACAAAAGTAAAGATATCAATTCCTTCATCAACATTTTACATGTTATCAGCAGCAAGCCGCCTCTTCAGTCCGAACAAGACTCAACTACTGACGAAGCTCAAAACGATAGTAAAAATGAAATACGTGATATCGGTCGCATTATCAAATCTGCAGTTAAAAGTTTACCTAAGAATGAAAGTGAAGGTATTTTAGAAGCTGCTTATGCCAAAGGGCTTAGTATTGACATTGAGACAGCTGAAGCTATACAGCAATATCTCGGTGAAAATATGACAACGAAGGTGTCGCAATTACTATCAGAACTCAGTTCGTCTCAATTAGAGCCTGTTCCAATCGAGAGTCCACGAAGGACTGAACAAGCTAATGATCGTTCAGCGCTCGAAATCGAAAGCATCATCGCTAGATTAAAGGAAAAGGGCACCAATGTGAACCGTCTTCAAAAACAACTGCTCTGTGCTTATATTAATGAAAAAAACATCGAAAAAGTCAAAAGTTATCTGAGTGAACTTAGATTGTCTAATTTCGAGTTAAACACAGCCATTTTAGCACAGTTGTTTGAATTTTTATGTGAAAATGATGAGATTGAACTTGCAAAAGAAATTAGAACAGAAATTGAATCAAAGAATGAAGATTTCATATTGAGTCGTCTCAAATTGATTCAAATGGCACAAGCATTATTCCGAACCAATAGATATGATGAAGCCATACAGTTTTTAATAGAAAACAAATTTTCTGATGCTGAAAATGTAGGATTTTTAGTTAATTCTAAATGTTGGCAAATTTTAAACAGCTTAGCTGAACAAAAGGATTGTGAAAAAGTAAAAGAAGTAACAAAAACGTTGCTCGAAAACAATTATGTCCAGGCTTCGAATGTTTTATTTGGTCCTACAATCAAAGCGTACCTTCTTAACAATGACGTACAAGGCGCTCTAGTTGAATTTGAGAAATGCTGCAAGCAATATCGTTGCACTCCTTGGAAGGGAGAATTGATGAAGGCATTAATTATGAAGGAAGATGCTAACCAATTACAGTGGCTTGCTGATTTAAGTACACAGATACACGGTGAAGTAAACATTCTACATGATTTAGTACTTGCGTTCGTTGAGTGCGGAAGACTGAGACAGGCACGTCGTATTCTCGAAACACCAGGATTGCAGGCTCGACACAGACGCTTGGATGACGCTTGTCAGCGATACGTTGAGGAAGGGAAATCAGAGTACTTGGAAGGATTACTTGAGGCAACGAAAGAACTTTCTCACATTGATCGCTCAAACATCTTCTACCATTTACTCGTTACATACTGTAATGCCGATGAAACCGATAAAGCCCTCGGACTATGGACACTGCTTCAAGAAGAAAGCGAAGTACCGAGTAACCAATTTCTTGTCTACCTCGGAAACCATTTGAAATCAAAGAACAGAGATGTACCGTTTATAATTCCGGAAAAAATAGAAAAAGTTCAGTCCAAAAAGGAAGACATAATCCAAAAAATTGTCACACCTAAAGTACCTCAGAAACCAACAAAGGCCGAAATCTCCACAAACATCGAGGCCCTTGTTAAAGACGGAAACTTGGCACAAGCAATGGACGTCTTGCTTAAATCGATTGAAGTAGGCACCATGCCCAAATCGAATGTTGTTAAATATTTATTGAAGAATTTGGCCGAGGAGGGAAACGTTGAAAAGATTCAGCAACTAGGAAAGAATATCAGCGAAAACACGAAACGTAAAGTTACGTACGATGATAAACTGACTTTGGCGATATTCAGAAGAGGCGCTGGTGGACAACACATTGACAACTTATTGGAATCTGTCGAAGCAGCGAATATACGCGAGGATTTGGAAATAGCTCTCAGGAAATTCCCTAGAAGTAGTGCACTAGCAAACTTGGTTAATGATACAGAGCTCGTTCAAAAATGCACCAAAATAGCGGAAATCGCAGCGTCGAAGGGTATAACCACGCCAGTTAATTTACTTTGGATGGAATTGATATTGGCAGGAAAAGACGAAGAAGCACGAGACTTATGGAACAAATGGCTTATTACGGCACCGGTCATTGTATTCAGAAGACTGCTACAAGAGAGTTTCGTTAAAAACGAACCAGAAATAATAATGAAATTAATAAACGCATTGAAAACAAATAAAACTTTACCAACCAGGTCATTAGGTAATGCGTATTCAAGATTAATGAACTATTACTTACTGAACAACAACATCGCGGCTGCTGAAGCGTTGCTGAGTGATGCTATTCAACAAGGTGTACCAAAAGAGCACATTAACAAATCAAGTTTGTTGAGATTAAAGTCAGCAATCGAAGCAACTGTAAAAGAATTTAAACAGTTCGAAATTTAG

Protein

MSSLLRSTKFVRYFTGAARTLILNSVKTAEASAFLNSKALSAANNVFVRDYATTKKTESLDPLLQKLDSEVRRYGRITKRDIDEVLDEIQSKNDITSSQSLLVIRCCGELVPEELPEQRTLLVQKIWSVLTERGIAMDISHYNALLRVYIENQHPFSPAQFLTELENKGLQPNRVTYQRLMWRYCQEGDVEGATKVLEKMRELSMPVSEPVLNALVMGHAFHGDTEGAKAVLETMAGAGLQPSNRTYTLLACGYAKQGDIGGVEGILQLANEKDAYITDKDILDIIEHLAIGGHEDKVENLFKHLQKSIGYNQDVCNLILRLLNKGLDETAKKIFATMPKSSHFEDNLFKGAFFVRHLLRLNRSPDSIIKTCKDLTHEGLVPNAIYIATEGALQSGNCELAQKLFKELVNEGKEVRQHYYWPLLVKKGKEKDEEGLLQILRDMSTNNIPASGETLRDYVIPYLTTKSNAQSVIVKLQIANVPVIHAARNVMIHLLELGKINEASEIALQYRPRGQYNLVGRPLVNALYKSKDINSFINILHVISSKPPLQSEQDSTTDEAQNDSKNEIRDIGRIIKSAVKSLPKNESEGILEAAYAKGLSIDIETAEAIQQYLGENMTTKVSQLLSELSSSQLEPVPIESPRRTEQANDRSALEIESIIARLKEKGTNVNRLQKQLLCAYINEKNIEKVKSYLSELRLSNFELNTAILAQLFEFLCENDEIELAKEIRTEIESKNEDFILSRLKLIQMAQALFRTNRYDEAIQFLIENKFSDAENVGFLVNSKCWQILNSLAEQKDCEKVKEVTKTLLENNYVQASNVLFGPTIKAYLLNNDVQGALVEFEKCCKQYRCTPWKGELMKALIMKEDANQLQWLADLSTQIHGEVNILHDLVLAFVECGRLRQARRILETPGLQARHRRLDDACQRYVEEGKSEYLEGLLEATKELSHIDRSNIFYHLLVTYCNADETDKALGLWTLLQEESEVPSNQFLVYLGNHLKSKNRDVPFIIPEKIEKVQSKKEDIIQKIVTPKVPQKPTKAEISTNIEALVKDGNLAQAMDVLLKSIEVGTMPKSNVVKYLLKNLAEEGNVEKIQQLGKNISENTKRKVTYDDKLTLAIFRRGAGGQHIDNLLESVEAANIREDLEIALRKFPRSSALANLVNDTELVQKCTKIAEIAASKGITTPVNLLWMELILAGKDEEARDLWNKWLITAPVIVFRRLLQESFVKNEPEIIMKLINALKTNKTLPTRSLGNAYSRLMNYYLLNNNIAAAEALLSDAIQQGVPKEHINKSSLLRLKSAIEATVKEFKQFEI

Similarity

Belongs to the peptidase C19 family.

Uniprot

H9JLY6   A0A2W1BW04   A0A2A4K6E8   A0A2H1WV81   A0A212EYD1   A0A194QTS1   + More
A0A194PP36   A0A0L7LVL3   A0A2J7PMX8   A0A1Q3F4T2   A0A1L8DH78   B0WC19   W4VRN5   A0A336M2Y3   A0A336KJE1   A0A182MMV7   D2A3F7   A0A0T6AZJ1   A0A1I8NGP9   Q171R0   T1PDQ1   A0A1W4X312   B4LTB6   A0A182Y8I9   A0A182H8D7   A0A182QIP6   A0A067RKI5   A0A182NB72   A0A182F2S9   A0A182JUD3   A0A2M4B9G2   A0A084VMQ9   A0A182X4Z8   Q29MI0   A0A182KWM8   A0A182PUH8   A0A182IB62   W5J4P5   B4G971   Q5TS37   A0A1Y1KFU1   A0A182U4D6   A0A2M4B9B7   A0A2M4B9E5   A0A182RA72   A0A1S4GZ71   A0A182VTL9   A0A2M4A4B4   A0A2M4A4F6   A0A182V297   A0A034VWI5   A0A0M4EA80   A0A0A1WFA5   W8CA03   B4JDL6   A0A3B0K080   B3MM17   A0A1I8NQP2   B4KK34   A0A2M3ZFY0   A0A1W4VM47   B4MWX2   A0A2M3Z083   B4P9U4   B3NMB3   A0A0L0CET4   A0A1B0BJ05   B4Q8G4   B4I5G8   A0A1A9Y3P6   A0A1B0GCF9   A0A1B0ABF4   A0A1A9VUY4   U4U500   A0A1J1IMU6   A0A182JB11   A0A0V0G465   A0A224X9S8   Q9VJ86   Q95NR4   T1HC17   A0A069DXK3   A0A1B6MDN1   A0A1B6JLE4   A0A1B6C3W0   A0A1B6EW94   A0A2H8TGU9   A0A0A9Z3J5   A0A0K8SN95   J9JQL5   A0A1D2NG88   A0A226DXG4   A0A0P4Y843   A0A0N8C2T0   A0A0P5GHD6   A0A0N7ZKD9   A0A0P5PLK5   A0A0P6FNA9   A0A0P5CZE2  

Pubmed

19121390    28756777    22118469    26354079    26227816    18362917    + More
19820115    25315136    17510324    17994087    25244985    26483478    24845553    24438588    15632085    20966253    20920257    23761445    12364791    28004739    25348373    25830018    24495485    17550304    26108605    22936249    23537049    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    11313472    26334808    25401762    26823975    27289101   

EMBL

BABH01005443    BABH01005444    BABH01005445    KZ149975    PZC75943.1    NWSH01000098    + More
PCG79596.1    ODYU01011308    SOQ56970.1    AGBW02011531    OWR46509.1    KQ461194    KPJ06941.1    KQ459603    KPI92890.1    JTDY01000041    KOB79221.1    NEVH01023960    PNF17691.1    GFDL01012481    JAV22564.1    GFDF01008380    JAV05704.1    DS231884    EDS43079.1    GANO01000895    JAB58976.1    UFQT01000465    SSX24602.1    UFQS01000521    UFQT01000521    SSX04557.1    SSX24920.1    AXCM01004246    KQ971338    EFA01919.1    LJIG01022493    KRT80285.1    CH477448    EAT40722.1    KA646824    AFP61453.1    CH940649    EDW64958.1    JXUM01029429    JXUM01029430    KQ560852    KXJ80628.1    AXCN02000637    KK852572    KDR21105.1    GGFJ01000490    MBW49631.1    ATLV01014619    KE524975    KFB39253.1    CH379060    EAL33714.2    APCN01000642    ADMH02002211    ETN57784.1    CH479180    EDW28901.1    AAAB01008944    EAL40302.3    GEZM01087778    JAV58485.1    GGFJ01000488    MBW49629.1    GGFJ01000489    MBW49630.1    GGFK01002278    MBW35599.1    GGFK01002318    MBW35639.1    GAKP01013049    JAC45903.1    CP012523    ALC40190.1    GBXI01017189    JAC97102.1    GAMC01001699    JAC04857.1    CH916368    EDW03386.1    OUUW01000004    SPP79016.1    CH902620    EDV30832.1    CH933807    EDW11552.1    GGFM01006652    MBW27403.1    CH963857    EDW76611.1    GGFM01001188    MBW21939.1    CM000158    EDW90285.1    CH954179    EDV54784.1    JRES01000592    KNC29994.1    JXJN01015297    CM000361    CM002910    EDX05374.1    KMY90804.1    CH480822    EDW55624.1    CCAG010021402    KB632031    ERL88152.1    CVRI01000054    CRL00414.1    GECL01003275    JAP02849.1    GFTR01008762    JAW07664.1    AE014134    BT150103    AAF53668.2    AGL96299.1    AF327844    AY058795    AAK50882.1    AAL14024.1    ACPB03004821    ACPB03004822    GBGD01000116    JAC88773.1    GEBQ01005946    JAT34031.1    GECU01007719    JAS99987.1    GEDC01029309    JAS07989.1    GECZ01027628    JAS42141.1    GFXV01000703    MBW12508.1    GBHO01007219    GDHC01013268    JAG36385.1    JAQ05361.1    GBRD01011012    JAG54812.1    ABLF02032722    LJIJ01000048    ODN04280.1    LNIX01000011    OXA48906.1    GDIP01235021    JAI88380.1    GDIQ01120419    JAL31307.1    GDIQ01240733    GDIQ01240732    JAK10993.1    GDIP01236825    JAI86576.1    GDIQ01126776    GDIQ01096818    GDIQ01066750    JAL24950.1    GDIQ01062347    JAN32390.1    GDIP01179470    JAJ43932.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053240    UP000053268    UP000037510    + More
UP000235965    UP000002320    UP000075883    UP000007266    UP000095301    UP000008820    UP000192223    UP000008792    UP000076408    UP000069940    UP000249989    UP000075886    UP000027135    UP000075884    UP000069272    UP000075881    UP000030765    UP000076407    UP000001819    UP000075882    UP000075885    UP000075840    UP000000673    UP000008744    UP000007062    UP000075902    UP000075900    UP000075920    UP000075903    UP000092553    UP000001070    UP000268350    UP000007801    UP000095300    UP000009192    UP000192221    UP000007798    UP000002282    UP000008711    UP000037069    UP000092460    UP000000304    UP000001292    UP000092443    UP000092444    UP000092445    UP000078200    UP000030742    UP000183832    UP000075880    UP000000803    UP000015103    UP000007819    UP000094527    UP000198287   

PRIDE

H9JLY6    Q9VJ86    Q95NR4   

Pfam

PF12854   PPR_1        + More
PF17177   PPR_long
PF13812   PPR_3
PF04825   Rad21_Rec8_N
PF01535   PPR
PF13041   PPR_2
PF09976   TPR_21
PF02771   Acyl-CoA_dh_N
PF00441   Acyl-CoA_dh_1
PF02770   Acyl-CoA_dh_M
PF06809   NPDC1
PF00443   UCH

Interpro

IPR011990   TPR-like_helical_dom_sf        + More
IPR033490   LRP130       
IPR002885   Pentatricopeptide_repeat       
IPR033443   PPR_long       
IPR006910   Rad21_Rec8_N       
IPR018704   TPR_21       
IPR006091   Acyl-CoA_Oxase/DH_cen-dom       
IPR009100   AcylCoA_DH/oxidase_NM_dom       
IPR009075   AcylCo_DH/oxidase_C       
IPR013786   AcylCoA_DH/ox_N       
IPR006089   Acyl-CoA_DH_CS       
IPR037069   AcylCoA_DH/ox_N_sf       
IPR036250   AcylCo_DH-like_C       
IPR028889   USP_dom       
IPR018200   USP_CS       
IPR038765   Papain-like_cys_pep_sf       
IPR009635   NPDC1       
IPR001394   Peptidase_C19_UCH       

SUPFAM

SSF48452   SSF48452        + More
SSF56645   SSF56645       
SSF47203   SSF47203       
SSF54001   SSF54001       

Gene 3D

1.25.40.10     1.10.540.10    

ProteinModelPortal

H9JLY6   A0A2W1BW04   A0A2A4K6E8   A0A2H1WV81   A0A212EYD1   A0A194QTS1   + More
A0A194PP36   A0A0L7LVL3   A0A2J7PMX8   A0A1Q3F4T2   A0A1L8DH78   B0WC19   W4VRN5   A0A336M2Y3   A0A336KJE1   A0A182MMV7   D2A3F7   A0A0T6AZJ1   A0A1I8NGP9   Q171R0   T1PDQ1   A0A1W4X312   B4LTB6   A0A182Y8I9   A0A182H8D7   A0A182QIP6   A0A067RKI5   A0A182NB72   A0A182F2S9   A0A182JUD3   A0A2M4B9G2   A0A084VMQ9   A0A182X4Z8   Q29MI0   A0A182KWM8   A0A182PUH8   A0A182IB62   W5J4P5   B4G971   Q5TS37   A0A1Y1KFU1   A0A182U4D6   A0A2M4B9B7   A0A2M4B9E5   A0A182RA72   A0A1S4GZ71   A0A182VTL9   A0A2M4A4B4   A0A2M4A4F6   A0A182V297   A0A034VWI5   A0A0M4EA80   A0A0A1WFA5   W8CA03   B4JDL6   A0A3B0K080   B3MM17   A0A1I8NQP2   B4KK34   A0A2M3ZFY0   A0A1W4VM47   B4MWX2   A0A2M3Z083   B4P9U4   B3NMB3   A0A0L0CET4   A0A1B0BJ05   B4Q8G4   B4I5G8   A0A1A9Y3P6   A0A1B0GCF9   A0A1B0ABF4   A0A1A9VUY4   U4U500   A0A1J1IMU6   A0A182JB11   A0A0V0G465   A0A224X9S8   Q9VJ86   Q95NR4   T1HC17   A0A069DXK3   A0A1B6MDN1   A0A1B6JLE4   A0A1B6C3W0   A0A1B6EW94   A0A2H8TGU9   A0A0A9Z3J5   A0A0K8SN95   J9JQL5   A0A1D2NG88   A0A226DXG4   A0A0P4Y843   A0A0N8C2T0   A0A0P5GHD6   A0A0N7ZKD9   A0A0P5PLK5   A0A0P6FNA9   A0A0P5CZE2  

PDB

5I9H     E-value=5.77444e-13,     Score=185

KEGG

101737451    K17964 leucine-rich PPR motif-containing protein, mitochondrial | (RefSeq) leucine-rich PPR motif-co

GO

GO:0033617   GO:0070129   GO:0034551   GO:0097222   GO:0044528   GO:0003730   GO:0031673   GO:0030018   GO:0031426   GO:1903108   GO:0032981   GO:0005739   GO:1903862   GO:0050660   GO:0003995   GO:0016579   GO:0036459   GO:0016021   GO:0006511   GO:0005737   GO:0005515   GO:0016615   GO:0003824   GO:0005975   GO:0016616   GO:0030060   GO:0019752   GO:0016491   GO:0016295   GO:0016296  

PANTHER

PTHR46669  

Length:

1309

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0110999999999999

Exp number, first 60 AAs:

0.00909

Total prob of N-in:

0.00043

outside

1  -  1309

 

 

Pi

159.053473

Theta

134.763272

Tajima's D

0.31132

CLR

14.09363

CSRT

0.462826858657067

Interpretation

Uncertain