SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO07102  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA010537
Annotation
PREDICTED:_lactase-phlorizin_hydrolase-like_[Bombyx_mori]
Location in the cell
PlasmaMembrane   Reliability : 1.219
 

Sequence

CDS
ATGCTGCGTTTACCATTCGCTAATTTGTTATCTTTACTGTTATCCTTTGGCATTCTAACGAGTGCAATTGGAGTGTGTGTTTGCCATAATCCACGCAGATTTCCTGAAGGGTTTATGTTCAGTACTGCAACTGCGTCATACCAAATAGAAGGCGCTTGGAATGTTGATGGAAAGACTGAAAACATTTGGGATCATATTTGCCACAAAGAACCCAGTCCCATGGCTGACAACTCTACAGGAGACATCGCAAATGATTCATATAACCTTTACAAACGAGATGTTGAAATGATAAGAGAACTTGGTATTGATTATTACAGATTCTCTGTGTCCTGGACTCGTATTTTACCCACGAGTTTCCCAGATTACATAAATGAAGCTGGAGTTGCTTATTACAATAATCTGATTGACGAATTACTCAAACACAATATTAAGCCGATGCTCACAATTTACCACTGGGACTTACCACAGAAATTGCAAGATATGGGAGGTTGGACGAACCCATATATTATCGATTGGTATGCGGACTACGCTAGAGTTCTGTTCCAAAAATTTGGTGATCGAGTTAAGAATTGGATTACTATAAACGAACCGAAAGAAATTTGTTTCCAAGGTTATGGTAATGGTACAATGGCTCCAGCATACACTATGACCGGAGTAGCCGATTACTTGTGTGGGAAGAACGTTCTTTTAGCTCACGCTAAAGCTTATCATATCTATGACAAAGAATTCCGACCTACCCAAAATGGAAATATCTCTATAACCATTAGTTGCCAATGGTATGAGCCTGAAAGCGACCGCGAGGAAGATATCACCGCCGCGAATGAAATGATCTTATTCGAGTGGGGTCAATACGGTCACCCTATATTCACTGACAGCGGTGACTATCCCGAAATAGTCAAACAACGTGTAGCAGCTAAGAGTGCTGAACAAGGTTTCTTACGTTCACGGTTCCCAGAGCTAAGTCCTGAAGAAGTTCAATACATCCGTGGAACATCAGACTTTTTTGGAGTAAATCATTATTCGACTTATTTGGCGTATAGAAACGAATCAGTAGTGGGCCACTACGCAGTACCTTCCTATTTTGATGATGCTGGAGTAATCTATTATGCTAAGGATGAATGGGCCATTGGTACGCATAACAGAATTAAGACCACACCATGGGGCTTCTACAAACTTTTGAGACAAATTTCGAATTTTTACAATAACGTACCGATTATCATCACTGAAAACGGCTTCGCGACCCTGCCCGGCTTAGAAGACAACGACCGAATCACGCATCTTAGGTTGTACTTGAACGCTGTTCTTGATGCTATTGAAGATGGATCCGATATCAGACTCTACACTTCTTGGAGTTTGATGGATAATTTTGAATGGATGAATGGTTACACGCAAAGATTCGGATTTTATGAAGTTGATTACGACAGTCCAGAACGCACACGGACACCGAGAAAATCCGCCTTTGTATTCAAAGAAATTGTAAGATCAAGGACCCTGGATTTTGATTACGAACCTGAGAGCTATGTTATGACGATCGACGCAGGAAAATGA
Protein
MLRLPFANLLSLLLSFGILTSAIGVCVCHNPRRFPEGFMFSTATASYQIEGAWNVDGKTENIWDHICHKEPSPMADNSTGDIANDSYNLYKRDVEMIRELGIDYYRFSVSWTRILPTSFPDYINEAGVAYYNNLIDELLKHNIKPMLTIYHWDLPQKLQDMGGWTNPYIIDWYADYARVLFQKFGDRVKNWITINEPKEICFQGYGNGTMAPAYTMTGVADYLCGKNVLLAHAKAYHIYDKEFRPTQNGNISITISCQWYEPESDREEDITAANEMILFEWGQYGHPIFTDSGDYPEIVKQRVAAKSAEQGFLRSRFPELSPEEVQYIRGTSDFFGVNHYSTYLAYRNESVVGHYAVPSYFDDAGVIYYAKDEWAIGTHNRIKTTPWGFYKLLRQISNFYNNVPIIITENGFATLPGLEDNDRITHLRLYLNAVLDAIEDGSDIRLYTSWSLMDNFEWMNGYTQRFGFYEVDYDSPERTRTPRKSAFVFKEIVRSRTLDFDYEPESYVMTIDAGK

Summary

Similarity
Belongs to the glycosyl hydrolase 1 family.
EMBL
BABH01005438    BABH01005437    NWSH01000819    PCG74065.1    KQ460779    KPJ12242.1    + More
ODYU01001971    SOQ38904.1    KQ459598    KPI94629.1    KPJ12247.1    KPJ12243.1    KPI94624.1    KPI94627.1    KPJ12245.1    KPI94628.1    KPJ12248.1    KPI94632.1    KPJ12246.1    JN033714    AEW46867.1    KPI94633.1    KPI94630.1    RSAL01000077    RVE48784.1    JN033728    AEW46881.1    KPJ12249.1    JTDY01001400    KOB73970.1    KPJ12244.1    AGBW02011758    OWR46180.1    JTDY01005139    KOB67338.1    KPI94631.1    AGBW02008847    OWR52398.1    AGBW02009344    OWR51063.1    OWR52397.1    OWR46178.1    BABH01035726    RSAL01000019    RVE52748.1    JN033718    AEW46871.1    KZ150738    PZC70347.1    NWSH01000679    PCG74847.1    KZ150146    PZC72895.1    NWSH01001860    PCG69887.1    ODYU01004710    SOQ44881.1    NWSH01000883    PCG73724.1    PCG73725.1    BABH01016738    PCG73727.1    KZ149936    PZC77129.1    AGBW02008931    OWR52151.1    PCG73728.1    KQ459875    KPJ19634.1    ODYU01004903    SOQ45256.1    ODYU01011923    SOQ57942.1    AF052729    AAC06038.1    KQ459601    KPI93701.1    SOQ45257.1    KPI93700.1    BABH01020023    BABH01020024    PZC77128.1    AXCM01009805    BABH01014157    PCG73726.1    AAAB01008960    EAU76599.1    APCN01002262    ODYU01004836    SOQ45125.1    PZC77127.1    EAA44227.3    ODYU01006202    SOQ47842.1    AGBW02010585    OWR48225.1    ADMH02000892    ETN64734.1    AXCN02000455    GGFL01002037    MBW66215.1    GGFL01006404    MBW70582.1    AGBW02009638    OWR50268.1    KQ459589    KPI97521.1    ODYU01006201    SOQ47841.1    KQ459144    KPJ03597.1    SOQ45255.1    OWR48224.1    NWSH01000598    PCG75431.1    KQ458761    KPJ05206.1    PZC77130.1    EAL40075.2    KQ460870    KPJ11681.1    GALX01002583    JAB65883.1    JXUM01040976    KQ561266    KXJ79155.1    KQ459993    KPJ18573.1    GFDF01005306    JAV08778.1   
Pfam
PF00232   Glyco_hydro_1        + More
PF07782   DC_STAMP
Interpro
IPR001360   Glyco_hydro_1        + More
IPR017853   Glycoside_hydrolase_SF       
IPR033132   Glyco_hydro_1_N_CS       
IPR018120   Glyco_hydro_1_AS       
IPR012858   DC_STAMP-like       
SUPFAM
SSF51445   SSF51445       
PDB
5CG0     E-value=5.06517e-156,     Score=1415

Ontologies

Topology

SignalP
Position:   1 - 22,         Likelihood:  0.947560
 
 
Length:
515
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
17.43444
Exp number, first 60 AAs:
17.41483
Total prob of N-in:
0.77195
POSSIBLE N-term signal
sequence
inside
1  -  6
TMhelix
7  -  29
outside
30  -  515
 
 

Population Genetic Test Statistics

Pi
159.986378
Theta
157.932574
Tajima's D
-1.069236
CLR
0
CSRT
0.126843657817109
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Peptides ×
Source Sequence Identity Evalue
28556443 GTSDFFGVNHYSTY 100.00 4e-06
28556443 SAEQGFLR 100.00 5e-04
28556443 LYLNALLDAIK 100.00 5e-04
28556443 YNIEPMLTIYHWDLPQK 100.00 0.003
28556443 FSVSWTR 100.00 0.012
28556443 VAEAAPLDK 100.00 0.012
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