Gene

KWMTBOMO07088

Pre Gene Modal

BGIBMGA010528

Annotation

PREDICTED:_sodium-dependent_nutrient_amino_acid_transporter_1-like_isoform_X1_[Amyelois_transitella]

Location

Bomo_Chr12(+):3729698-3764513      View in EpiBrowser

Full name

Transporter      

Location in the cell

PlasmaMembrane   Reliability : 4.834

CDS

ATGGCAGTTGTGACACGACCGTGCGGTGACTTCCGTTGGATACGTAACAGCGCCTGCAGGAAGGGCACATCGCGAAATGGCTGGAATGTAAGATCAGCGTGTGACTTCGTCAAGACACAAATATGTACTGTGGCCCTTTCACTGACGCTCTTCAACTGCGCGCGTCTACCGAAAGAGGCATTCAAGTATGGCGCTGTTCCGTACCTGGTGGTCTACACATTCTGGCTTCTGGCCGTTGGGCTGCCAACGACTTTGCTGGAGCTCGCCATGGGACAGCTTAGTCAGCAAGATCCGGTGGGAGTTTGGAGAGCTGTTCCTATATTAAGAGGTGTGGGTCATCTAAAAGTTTTGACTTCGTATATATGCTGTGTTTATTACATGATGTACGTAGCTTTGGCCCTGGCCTTCCTCGTTTGGATAGGGAAAGGCACTTTTCCGCTGAGAGACTGTACTAGGCTTCAAATGACGCCGAACGGATACGAAAACAAAATGAACGCATCTGAATGTTTCAAATCAACATTCTTGTCACCTTTCACGGACTATCCACAATATTTGGGAATCATGGCGATACTTATCTTCATTTTATGGTTTTTCTTGCCTATACTATTATATCGTCTTCGAAAAACGCTTAAAGTAGCTATGACTGTGTTAGTGCCATCTGTCGTACTATTTGCTGCATTGCTAGCTACGTTTCTGGCCAAGAGTGACGTGTTGAATGCCATGTTCGAATCTTGCGAGCAATGGACGCCGTTATCAGAGCCGTACATTTGGCACAGCGCTTTAGTGCAGGCGTTGCTGTCCACGCACATATCTGGAGGCTACCTGATCAGTTCCGGGGGAACGATTTATAGGCATTCGGATGTGCGATGGACGTCAGCATGCGTTATCATGACCAGTATATTCTCGGGTTGGCTTTGGGTGCTTCTCTGGGAGTCTATCGACGCAGAAAGCAAGAAGAACACTGATTTCGTATCAATCCTCGTGTTAGTTTATCAGTCTTCTATATCAGAGAGGAGATCGAAGCAGTGGCCTTTGCTGGCTTATGGAGTTATATTCTTATCTGGTATCACCACTATGGTTACCCTCCTGTTTCCTGTCTTCGACAAACTACATCGTCTCACCGGTGACCACTGGAGGTTGTTCGCCAGCGCGTCTTCAGCTGTTGGTACAGCCTTCACCGTGGCAGTGTTGGCCCGAGGTCTTGAAGTCGCCACGATGCTGGACGATTTGGTCATTCCGCTGCTAACAACATTCACCACGGCCGTTGAAGTGGTCGGATTTGTTTTTATTTATGGTTGGTGCTACCTCACGATTGACATAGAGTTTCTCACTGGCATGAAACTACCCTGTTTCTGGATAGCGACGTGGTGGTGTACGCCTATATTAGTGCTGGGTACCACTGGCTGGTGGCTTCGAGCTCTGCTCCGAGCTACTTGGGGCCAGGAGGAGACGCTGTGGCCTCTAGTCGGAGCTTTCGCGGGGATTCTCATAGTCATGGTCGTCATCGCCGCTGTGGCCGTGGCTAAAGAAGAACAATTCAATTTAACTTCGAAAATATCATCGGCCTTCAAGTCGTCGCGGCTGTGGGGTCCCGAGGAGCCGATGGCGCGGTACGTTTGGATGTCGCAGCGTTACCTCAACGACACGCTCAGCAGCACCAATGACGTCAGCTACGAACGGCCCGACAGCGACACCGCCCACAACAAATACAAAGAAAACTGGCTTAGCCATAAAGATAAATACCAAAAAGAATACGATTATTACTCGAGGATCGTCGCGACGAAAACTCCAAGCAAAGCCTCCAAAGAGACATACCCAGCGCACACTATCCCAAGAAGCGAAACGAAGGTTCCAGAAGAGAAGTTCCGGTCGCCCAACATATGCATCGCTGAGGCCCAAATCGGGGGCCCCACGAATTGCAACTGCAACAGACATTTCAAACTAAACGTACCTAAAGATCTAAGGAACAATGAAGTTACGACGAGCTTATGA

Protein

MAVVTRPCGDFRWIRNSACRKGTSRNGWNVRSACDFVKTQICTVALSLTLFNCARLPKEAFKYGAVPYLVVYTFWLLAVGLPTTLLELAMGQLSQQDPVGVWRAVPILRGVGHLKVLTSYICCVYYMMYVALALAFLVWIGKGTFPLRDCTRLQMTPNGYENKMNASECFKSTFLSPFTDYPQYLGIMAILIFILWFFLPILLYRLRKTLKVAMTVLVPSVVLFAALLATFLAKSDVLNAMFESCEQWTPLSEPYIWHSALVQALLSTHISGGYLISSGGTIYRHSDVRWTSACVIMTSIFSGWLWVLLWESIDAESKKNTDFVSILVLVYQSSISERRSKQWPLLAYGVIFLSGITTMVTLLFPVFDKLHRLTGDHWRLFASASSAVGTAFTVAVLARGLEVATMLDDLVIPLLTTFTTAVEVVGFVFIYGWCYLTIDIEFLTGMKLPCFWIATWWCTPILVLGTTGWWLRALLRATWGQEETLWPLVGAFAGILIVMVVIAAVAVAKEEQFNLTSKISSAFKSSRLWGPEEPMARYVWMSQRYLNDTLSSTNDVSYERPDSDTAHNKYKENWLSHKDKYQKEYDYYSRIVATKTPSKASKETYPAHTIPRSETKVPEEKFRSPNICIAEAQIGGPTNCNCNRHFKLNVPKDLRNNEVTTSL

Similarity

Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.

Uniprot

H9JLX6   A0A2A4JQ39   A0A2H1VKR8   A0A194PIN1   A0A194QNJ1   A0A2H1WUH2   + More
A0A212EQK9   A0A194PFI0   A0A194R384   A0A2W1BHG8   A0A2A4JUW4   A0A2A4JU52   A0A069DWH7   A0A146LQK9   A0A146MEM0   A0A2H8TMM4   T1HU77   A0A2S2PQU7   A0A2S2PMX6   A0A1B6DBA5   J9KES3   A0A1B6CRS2   A0A2S2QZ54   X2D4J3   A0A2J7Q3G4   D6WED3   B6CY69   A0A1B6LCC7   A0A1B6F5R4   A0A1Y1MI14   A0A1Y1MIE3   A0A1Y1ML21   A0A1B6IXX6   A0A1B6GDB9   N6U4N6   A0A336MYS6   A0A1L8DJV8   A0A1L8DJV5   A0A034VAZ8   A0A336L0X2   A0A0L0CIV0   A0A0R1E314   B4PJW1   A0A1I8PP83   B4MMQ9   B4KZ22   A0A1I8MQX4   B4J247   A0A1B0EY28   A0A0Q5UJS4   Q8IQQ6   C7LAC7   B3NHW0   A0A0Q9XPD1   Q9VVG3   A0A0J9UN26   B5DQ44   A0A3B0KG05   Q9U975   Q8IQQ7   A0A0M3QWZ4   A0A0P8YGX5   A0A0J9RYC3   A0A1I8PP26   C7LA83   A0A336LX44   B4QNU2   B4HKR7   B3M6C3   A0A1A9VYS9   A0A1W4W4W9   A0A1B0C4T3   A0A336KAS2   A0A1W4W4B2   A0A1B0FAG9   A0A1A9WEB0   A0A0K8TQT5   A0A182N207   B4H6L6   A0A084WCY0   Q7PPI4   A0A1B0C1B4   A0A3F2YSQ9   A0A1A9Y1H6   A0A182VDJ0   A0A182THX6   A0A182WYX7   A0A182LDV4   A0A1S4GN76   A0A182PEN3   A0A3F2YSN9  

Pubmed

19121390    26354079    22118469    28756777    26334808    26823975    + More
18362917    19820115    18621706    28004739    23537049    25348373    26108605    17994087    17550304    25315136    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    18057021    22936249    15632085    10433833    26369729    24438588    12364791    20966253   

EMBL

BABH01005368    BABH01005369    BABH01005370    NWSH01000927    PCG73520.1    ODYU01003081    + More
SOQ41391.1    KQ459603    KPI92908.1    KQ461194    KPJ06924.1    ODYU01011147    SOQ56711.1    AGBW02013269    OWR43759.1    KQ459605    KPI92042.1    KQ460953    KPJ10306.1    KZ150203    PZC72266.1    NWSH01000575    PCG75556.1    PCG75557.1    GBGD01000837    JAC88052.1    GDHC01009060    JAQ09569.1    GDHC01001187    JAQ17442.1    GFXV01003570    MBW15375.1    ACPB03000713    GGMR01019223    MBY31842.1    GGMR01018115    MBY30734.1    GEDC01014376    JAS22922.1    ABLF02019274    ABLF02019277    ABLF02019278    ABLF02019280    ABLF02019281    ABLF02019283    GEDC01021174    JAS16124.1    GGMS01013823    MBY83026.1    KC713794    AHH29252.1    NEVH01019067    PNF23126.1    KQ971318    EFA00393.2    EU597677    ACH86322.1    GEBQ01025115    GEBQ01018628    JAT14862.1    JAT21349.1    GECZ01024254    JAS45515.1    GEZM01030681    JAV85429.1    GEZM01030679    JAV85431.1    GEZM01030680    JAV85430.1    GECU01015915    JAS91791.1    GECZ01009466    JAS60303.1    APGK01049566    APGK01049567    KB741156    KB632169    ENN73547.1    ERL89466.1    UFQS01002456    UFQT01002456    SSX14090.1    SSX33507.1    GFDF01007342    JAV06742.1    GFDF01007341    JAV06743.1    GAKP01020255    GAKP01020254    JAC38698.1    UFQS01001441    UFQT01001441    SSX10915.1    SSX30593.1    JRES01000428    KNC31379.1    CM000159    KRK02018.1    EDW94730.1    KRK02019.1    CH963847    EDW73465.2    CH933809    EDW17819.1    CH916366    EDV96998.1    AJVK01033670    AJVK01033671    AJVK01033672    CH954178    KQS44048.1    AE014296    BT133104    AAN11709.1    AEX98024.1    AHN58118.1    BT099677    ACV44463.1    EDV51975.2    KQS44049.1    KRG05778.1    KRG05779.1    BT033062    AAF49348.2    ACE82585.1    CM002912    KMZ00221.1    CH379069    EDY73688.2    OUUW01000012    SPP87310.1    AJ243264    CAB53640.1    BT133440    AAN11707.1    AAN11708.1    AFH78572.1    CP012525    ALC44969.1    CH902618    KPU78195.1    KMZ00220.1    KMZ00222.1    BT099633    ACU64822.1    UFQS01000248    UFQT01000248    SSX01993.1    SSX22370.1    CM000363    EDX10844.1    CH480815    EDW41872.1    EDV39743.1    KPU78196.1    JXJN01025645    SSX01994.1    SSX22371.1    CCAG010006264    GDAI01000884    JAI16719.1    CH479214    EDW33444.1    ATLV01022898    KE525337    KFB48074.1    AAAB01008948    EAA10362.5    JXJN01023976    APCN01004624   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000007151    UP000015103    + More
UP000007819    UP000235965    UP000007266    UP000019118    UP000030742    UP000037069    UP000002282    UP000095300    UP000007798    UP000009192    UP000095301    UP000001070    UP000092462    UP000008711    UP000000803    UP000001819    UP000268350    UP000092553    UP000007801    UP000000304    UP000001292    UP000078200    UP000192221    UP000092460    UP000092444    UP000091820    UP000075884    UP000008744    UP000030765    UP000007062    UP000075840    UP000092443    UP000075903    UP000075902    UP000076407    UP000075882    UP000075885   

PRIDE

H9JLX6    Q8IQQ6    Q9VVG3    Q9U975    Q8IQQ7    C7LA83    + More

Pfam

PF00209   SNF

Interpro

IPR037272   SNS_sf        + More
IPR000175   Na/ntran_symport       

SUPFAM

SSF161070   SSF161070       

ProteinModelPortal

H9JLX6   A0A2A4JQ39   A0A2H1VKR8   A0A194PIN1   A0A194QNJ1   A0A2H1WUH2   + More
A0A212EQK9   A0A194PFI0   A0A194R384   A0A2W1BHG8   A0A2A4JUW4   A0A2A4JU52   A0A069DWH7   A0A146LQK9   A0A146MEM0   A0A2H8TMM4   T1HU77   A0A2S2PQU7   A0A2S2PMX6   A0A1B6DBA5   J9KES3   A0A1B6CRS2   A0A2S2QZ54   X2D4J3   A0A2J7Q3G4   D6WED3   B6CY69   A0A1B6LCC7   A0A1B6F5R4   A0A1Y1MI14   A0A1Y1MIE3   A0A1Y1ML21   A0A1B6IXX6   A0A1B6GDB9   N6U4N6   A0A336MYS6   A0A1L8DJV8   A0A1L8DJV5   A0A034VAZ8   A0A336L0X2   A0A0L0CIV0   A0A0R1E314   B4PJW1   A0A1I8PP83   B4MMQ9   B4KZ22   A0A1I8MQX4   B4J247   A0A1B0EY28   A0A0Q5UJS4   Q8IQQ6   C7LAC7   B3NHW0   A0A0Q9XPD1   Q9VVG3   A0A0J9UN26   B5DQ44   A0A3B0KG05   Q9U975   Q8IQQ7   A0A0M3QWZ4   A0A0P8YGX5   A0A0J9RYC3   A0A1I8PP26   C7LA83   A0A336LX44   B4QNU2   B4HKR7   B3M6C3   A0A1A9VYS9   A0A1W4W4W9   A0A1B0C4T3   A0A336KAS2   A0A1W4W4B2   A0A1B0FAG9   A0A1A9WEB0   A0A0K8TQT5   A0A182N207   B4H6L6   A0A084WCY0   Q7PPI4   A0A1B0C1B4   A0A3F2YSQ9   A0A1A9Y1H6   A0A182VDJ0   A0A182THX6   A0A182WYX7   A0A182LDV4   A0A1S4GN76   A0A182PEN3   A0A3F2YSN9  

PDB

4XPT     E-value=2.22594e-10,     Score=160

KEGG

101736768    K05336 solute carrier family 6 (neurotransmitter transporter), invertebrate | (RefSeq) sodium-depend

GO

GO:0005328   GO:0016021   GO:0043005   GO:0005886   GO:0005332   GO:0042165   GO:0006836   GO:0005634   GO:0008270   GO:0005515   GO:0004319   GO:0004320   GO:0016295   GO:0016296  

PANTHER

PTHR11616  

Length:

663

Number of predicted TMHs:

11

Exp number of AAs in TMHs:

242.06869

Exp number, first 60 AAs:

1.80476

Total prob of N-in:

0.17256

outside

1  -  63

TMhelix

64  -  86

inside

87  -  116

TMhelix

117  -  139

outside

140  -  180

TMhelix

181  -  203

inside

204  -  209

TMhelix

210  -  232

outside

233  -  253

TMhelix

254  -  276

inside

277  -  287

TMhelix

288  -  310

outside

311  -  344

TMhelix

345  -  367

inside

368  -  379

TMhelix

380  -  399

outside

400  -  413

TMhelix

414  -  436

inside

437  -  447

TMhelix

448  -  470

outside

471  -  484

TMhelix

485  -  507

inside

508  -  663

 

 

Pi

205.936711

Theta

16.595667

Tajima's D

0.565641

CLR

0.285575

CSRT

0.543872806359682

Interpretation

Uncertain