The Silkworm Genome Information Database

Gene

KWMTBOMO07083

Pre Gene Modal

BGIBMGA010431

Annotation

PREDICTED:_CUGBP_Elav-like_family_member_1_isoform_X5_[Bombyx_mori]

Location

Bomo_Chr12(-):3250407-3257347 View in EpiBrowser

Location in the cell

Extracellular Reliability : 1.221 Nuclear Reliability : 1.33

CDS

ATGCACAAAAACGAAAATGCTTTACGGTCGACCGTGGTGGACTGGGAACGGAAGCTTTTCGTGGGTATGCTGAACAAGAAATTGGCTGAGAACGACGTGAGAGCTCTGTTCTCGGGACACGGAGCCATCGAGGAGTGTACCGTGCTGAGGGACGCCCAGGGTCAAAGCAAAGGATGCGCATTTGTAACCTTCGTATCGAAGCAGGCCGCTATAGCTGCCATAAAAGCGTTACATCACAGTCAAACGATGGAAGGCTGCTCAGCGCCTCTGGTCGTTAAGTTTGCGGACACGCAGAAAGAGAAAGAACAGAAAAAGTTGCAAGCGATGCAGGCCAGCCTATGGGGCATCACGACGCCGGTGGCACCGACTGCGTACCTCGCGTCGGAAGCGGCGCTCTCACCAGCCACGCAACTGCAACTACTGCAGCAACTGCAAGCGGTCGGCTTGCAGCAACAGTTACTGCAAGGGCAGGGCTCGACTCTGTTACAAGGTGTTAACTATCAGGATATCGGTTTCAATGGTGCAGGACTGAGCGGTAGCGGAGTGGGAAGCGTGGGTGCGGAACAGCTCGGGGGCTTGCTGGCCCCCGTGTCCGTGCAGAACCTGGCGGCTCTGGCGGCCATAGCGCAGCCCCCCGTCGTGTCGCAGTCGCAGGCTGTCGCGCCAATCGCCCCCACCACCGCCCCGCAATCCGCGGCGCCGCAACTATGTCTTCTCGGGAAGACTAACATTACAGGGTCAACCGCTGAGCCGCTGAGTTCAGCGTACGCCGCGCAGTTCGGCAGCGCTGCGTTCGCTGCAGCGCCGCTCGGGTCAGTGCTGGGGTCGGCAGCCGCCGCAGCCGCGGGGAAACAAGTCGAAGGTCCGGAAGGCGGCAACCTGTTCATTTACCACCTGCCCCAGGAGTTCACGGACACGGACCTGGCGTCTACGTTTCTGCCGTTCGGACACGTGATTTCGGCAAAAGTGTTCATAGACAAACAGACGAACCTCTCGAAGTGTTTCGGTTTCGTCTCGTACGACAACGCGGCCTCCGCACAAGCGGCCATACAGGCGATGAACGGCTTTCAAATAGGTACAAAGAGACTTAAAGTTCAATTGAAACGATCCAAGGAACTGTCAAGACCGTACTAG

Protein

MHKNENALRSTVVDWERKLFVGMLNKKLAENDVRALFSGHGAIEECTVLRDAQGQSKGCAFVTFVSKQAAIAAIKALHHSQTMEGCSAPLVVKFADTQKEKEQKKLQAMQASLWGITTPVAPTAYLASEAALSPATQLQLLQQLQAVGLQQQLLQGQGSTLLQGVNYQDIGFNGAGLSGSGVGSVGAEQLGGLLAPVSVQNLAALAAIAQPPVVSQSQAVAPIAPTTAPQSAAPQLCLLGKTNITGSTAEPLSSAYAAQFGSAAFAAAPLGSVLGSAAAAAAGKQVEGPEGGNLFIYHLPQEFTDTDLASTFLPFGHVISAKVFIDKQTNLSKCFGFVSYDNAASAQAAIQAMNGFQIGTKRLKVQLKRSKELSRPY

Uniprot

H9JLN0 A0A3S2P433 A0A2A4IRY1 A0A2A4ISW8 A0A2H1UZU2 A0A2A4ITN0 + More
A0A194QPL4 A0A0L7LL60 A0A0K8W484 A0A034V6H3 A0A0K8V120 A0A0K8UZZ0 A0A034V4C5 A0A034V9A3 A0A034V8P4 A0A0K8WF31 A0A034V7L1 A0A1L8DGI9 A0A194PHX0

Pubmed

19121390 26354079 26227816 25348373

EMBL

BABH01005336 BABH01005337 RSAL01000028 RVE51853.1 NWSH01007909 PCG62757.1 + More
PCG62759.1 ODYU01000002 SOQ34046.1 PCG62758.1 KQ461194 KPJ06920.1 JTDY01000662 KOB76293.1 GDHF01006408 JAI45906.1 GAKP01020833 JAC38119.1 GDHF01019705 JAI32609.1 GDHF01020181 JAI32133.1 GAKP01020831 JAC38121.1 GAKP01020829 JAC38123.1 GAKP01020832 JAC38120.1 GDHF01002849 JAI49465.1 GAKP01020830 JAC38122.1 GFDF01008512 JAV05572.1 KQ459603 KPI92912.1

Proteomes

UP000005204 UP000283053 UP000218220 UP000053240 UP000037510 UP000053268 + More

PRIDE

H9JLN0

Pfam

PF00076 RRM_1

Interpro

IPR012677   Nucleotide-bd_a/b_plait_sf        + More
IPR035979   RBD_domain_sf
IPR000504   RRM_dom
IPR034196   CELF1/2_RRM1

SUPFAM

SSF54928 SSF54928

Gene 3D

3.30.70.330

CDD

cd12631 RRM1_CELF1_2_Bruno

ProteinModelPortal

H9JLN0 A0A3S2P433 A0A2A4IRY1 A0A2A4ISW8 A0A2H1UZU2 A0A2A4ITN0 + More
A0A194QPL4 A0A0L7LL60 A0A0K8W484 A0A034V6H3 A0A0K8V120 A0A0K8UZZ0 A0A034V4C5 A0A034V9A3 A0A034V8P4 A0A0K8WF31 A0A034V7L1 A0A1L8DGI9 A0A194PHX0

PDB

4TLQ E-value=2.17656e-34, Score=364

KEGG

101741218 K02177 bruno | (RefSeq) CUGBP Elav-like family member 1

PATHWAY

04320 Dorso-ventral axis formation - Bombyx mori (domestic silkworm)

GO

GO:0003723 GO:0003676 GO:0000166 GO:0000287 GO:0005634 GO:0008270 GO:0005515 GO:0004319 GO:0004320 GO:0016295 GO:0016296

Length:

377

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.889859999999999

Exp number, first 60 AAs:

0.00142

Total prob of N-in:

0.05954

outside

1 - 377

Pi

166.988764

Theta

147.388461

Tajima's D

-0.941801

CLR

148.309577

CSRT

0.155542222888856

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics