Gene

KWMTBOMO07074

Pre Gene Modal

BGIBMGA010436

Annotation

PREDICTED:_spondin-1-like_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr12(-):3148806-3158687      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.663

CDS

ATGAAGTCGATTTGGAGAGCGTTCTTATTGTTACACTATTTAAATTTTCATAAAATTATGTGTTTCCGTTGCGATCGCCGCCCTTATGGCTCTACAGCGCCAGCTTCACCACCGGATGGTCGTTTTCATCTCAATGTACTTGGAGTTGAAAATCATGCTTACTTACCAGAACAAGTCTATACAGCACAAATAACGTCGACCGATGGCGAATCCAAATTTACGGGTTTCATGATATCAGCTGAGGGGGACACTCGACAAGACCCGAAGAACCCACGGAGACTCATCTCCTTATTCCCGGGTGATATTAGGCCGCAGAAAATCGAAACGGCTAAGTTTAGTGACCGCTGTCTCTACTCAGTCGAGCAAGCTACGCGCACTTGGAAAACTTCTGTTGAGGTGTTTTGGCAAGCCCCACCCACAGGTCACGGTTGTGTTACATTGCGTGCTGTGGTAGTTGAAAACGATGAACAGTGGTTCGAAGATGGTGCTCCGCTCACGCAAAAGATCTGCGAGGACTTAAGGCAGCCCGACGACATGTCGCCACTTATAAATTACGATTGTCAGATCTGTGATGAAGCTAAATATGAGATATCTTTCACCGGCGTTTGGTCCCGTAATACTCATCCTCGATTATATCCTGAAAACGTTTGGGTCCCTAGATTTAGTGATTTAGTTGGCGCTTCTCACGATGTGGACTATTTAATGTGGATACCGGGCAACTTGGCCGGTGAAGGAATGCGGGACTTAGCCGAACATGCTAATTCGAGTAAACTCGAAACCGAAATAAGAGAAAAGATAGGGGACGGGGTACGTACTCTCATTAAGGGTAAAGGCCACGGCTATCGCAAAATGAACAATCCAACGTTCGCGATTTTTCGCGCGGATAAAAAAAACCATTTAGTGTCGGTTGCGGTGGCTCTTCATCCATCACCAGATTGGTTTCTTGGAGTTACGAGGTTTGAACTGTGTCAGGAAGATAATACTTGGCTACGGGAGAGAGAGTTGAATCTCTTTCCATGGGATGCTGGGACAGACAGCGGTGTATCGTATGAGTCACCGAACATTGAAACGTATCCGCAAGACACGATATCTCGCGTTGCAATGAGTTCATACGACAAAAAATCGCCCTTCTACCAAACGACAATGACGGAAATGCATCCGTTCGGAAAACTCCACATCAAATTCATAAGGAGCTATCACAGAGAATGCGAAGACGAGGAAGAAACTACAGAAACGACGAGTCCTGAAGGAGATCTAGAAAGTACATCAACCACAGAGACACCTACTACGGAAGAGTCGGAAGGACCTTTCGAGCCAAAGCCGCCATCCAGCGAAGATCCGATAGTATTCGATCAGGATTCTTCTGAAGAATGTCCCATGTCTGAATGGCAAGCCTGGAGTTCATGTGAAGGGCCCTGCGACCACGGACACGTCAAGGGGTACCAATGGCGGGTGAGGTACCATCTCGTCGATGGCATTGCCGTTGAGAAATACGATCCTTATAATCAGCACACTTTAAATCTAGAAGTGCCAAAGTATTGCAAAAATCACGTCGAAGATTTTCAAAGGAAAGAGTGCTTCGAGAAATGCTCTGAAGATTACGATGAGCATGAAGACGAAATAAAAATGGAGAGAAGGATAATATCGGAGATCATGCCTGGTTCTTCATGGGGTGGATCGAGTAGAAAAAATACCAAGCATTAA

Protein

MKSIWRAFLLLHYLNFHKIMCFRCDRRPYGSTAPASPPDGRFHLNVLGVENHAYLPEQVYTAQITSTDGESKFTGFMISAEGDTRQDPKNPRRLISLFPGDIRPQKIETAKFSDRCLYSVEQATRTWKTSVEVFWQAPPTGHGCVTLRAVVVENDEQWFEDGAPLTQKICEDLRQPDDMSPLINYDCQICDEAKYEISFTGVWSRNTHPRLYPENVWVPRFSDLVGASHDVDYLMWIPGNLAGEGMRDLAEHANSSKLETEIREKIGDGVRTLIKGKGHGYRKMNNPTFAIFRADKKNHLVSVAVALHPSPDWFLGVTRFELCQEDNTWLRERELNLFPWDAGTDSGVSYESPNIETYPQDTISRVAMSSYDKKSPFYQTTMTEMHPFGKLHIKFIRSYHRECEDEEETTETTSPEGDLESTSTTETPTTEESEGPFEPKPPSSEDPIVFDQDSSEECPMSEWQAWSSCEGPCDHGHVKGYQWRVRYHLVDGIAVEKYDPYNQHTLNLEVPKYCKNHVEDFQRKECFEKCSEDYDEHEDEIKMERRIISEIMPGSSWGGSSRKNTKH

Uniprot

H9JLN5   A0A2H1VRZ9   A0A3S2PHU8   A0A212EH32   A0A2A4K2N3   A0A2A4K1M3   + More
A0A3S2NIG3   A0A194PHX8   A0A2H1VQ85   U5EYT8   Q170L4   A0A023F2I8   A0A182M9X5   A0A182W944   A0A182R5C7   A0A182Y1R5   A0A182PBS9   A0A2M4CJ21   A0A182JBS3   A0A0P5PL34   A0A1Q3FPJ2   A0A1Q3FP78   A0A2J7PR62   A0A1B6JTC9   A0A1J1IVV5   A0A0P5R1Y0   A0A224XEU1   A0A2J7PR48   A0A2J7PR47   A0A0P6FLY3   A0A2J7PR63   A0A0P5EHT2   A0A0P5A418   A0A0P6FNM0   A0A0P5H4F8   A0A0P5SZF3   A0A0P5EMH8   A0A0N8CXC5   A0A0P5Z9I4   A0A0P5EU30   A0A0P5AL01   A0A0P4ZG86   A0A0P5QQF6   A0A0N8CEJ0   A0A0P5PPB9   A0A0P5WQD1   A0A0N8ARA9   A0A0P5MPN1   A0A0P6GS18   A0A0P6DCY0   A0A0P5I8X5   A0A0P5CIT8   A0A0P5SCA1   A0A0N8AJJ8   A0A0P5TWQ4   A0A0P5G5S6   A0A0N8BMI8   A0A0P5K323   A0A0N8BPV7   A0A0P5S9E5   A0A0P6EAL7   A0A0P5UAZ6   A0A0P5E4B7   A0A0P5MWG3   A0A0P5XD67   A0A0P5UGB3   A0A0P5T3I4   A0A336LL51   A0A0P6CTJ0   A0A0P5IU67   A0A0P5KVB3   A0A0P6I4P9   A0A0P5KSU2   A0A0P5TFB0   E0VCJ0   A0A164MD69   E2BUL2   A0A2P8YCY1  

Pubmed

19121390    22118469    26354079    17510324    25474469    25244985    + More
20566863    20798317    29403074   

EMBL

BABH01005319    BABH01005320    BABH01005321    ODYU01003798    SOQ43004.1    RSAL01000028    + More
RVE51860.1    AGBW02014975    OWR40793.1    NWSH01000232    PCG78164.1    PCG78165.1    RVE51861.1    KQ459603    KPI92922.1    SOQ43005.1    GANO01000077    JAB59794.1    CH477472    EAT40381.1    GBBI01003473    JAC15239.1    AXCM01008352    GGFL01000700    MBW64878.1    GDIQ01132338    JAL19388.1    GFDL01005525    JAV29520.1    GFDL01005644    JAV29401.1    NEVH01022633    PNF18806.1    GECU01005533    JAT02174.1    CVRI01000059    CRL03842.1    GDIQ01108980    JAL42746.1    GFTR01008128    JAW08298.1    PNF18808.1    PNF18807.1    GDIQ01045511    JAN49226.1    PNF18809.1    GDIQ01270118    JAJ81606.1    GDIP01208772    JAJ14630.1    GDIQ01045510    JAN49227.1    GDIQ01233233    GDIQ01119073    GDIP01095690    JAK18492.1    JAM08025.1    GDIP01134289    JAL69425.1    GDIQ01267301    JAJ84423.1    GDIP01089647    JAM14068.1    GDIP01046852    JAM56863.1    GDIQ01267300    GDIQ01197652    JAJ84424.1    GDIP01197830    JAJ25572.1    GDIP01213072    JAJ10330.1    GDIQ01113789    JAL37937.1    GDIP01139527    JAL64187.1    GDIQ01125376    JAL26350.1    GDIP01095689    JAM08026.1    GDIQ01250587    GDIQ01233232    GDIQ01163152    GDIQ01132337    JAK01138.1    GDIQ01156604    JAK95121.1    GDIQ01029118    JAN65619.1    GDIQ01079590    GDIQ01048851    JAN15147.1    GDIQ01217146    JAK34579.1    GDIP01185568    JAJ37834.1    GDIP01141635    JAL62079.1    GDIQ01269475    JAJ82249.1    GDIP01138432    JAL65282.1    GDIQ01267746    JAJ83978.1    GDIQ01265527    GDIQ01233231    GDIQ01203000    GDIQ01188747    GDIQ01163155    GDIQ01160359    GDIQ01119072    JAK88570.1    GDIQ01215998    GDIQ01112476    JAK35727.1    GDIQ01156603    JAK95122.1    GDIP01142732    JAL60982.1    GDIQ01065551    JAN29186.1    GDIP01132845    JAL70869.1    GDIP01147227    JAJ76175.1    GDIQ01158613    JAK93112.1    GDIP01073851    JAM29864.1    GDIP01113440    JAL90274.1    GDIP01131532    JAL72182.1    UFQT01000038    SSX18435.1    GDIQ01087539    JAN07198.1    GDIQ01210190    JAK41535.1    GDIQ01180097    JAK71628.1    GDIQ01009616    JAN85121.1    GDIQ01180096    JAK71629.1    GDIP01127234    JAL76480.1    DS235053    EEB11096.1    LRGB01003024    KZS04951.1    GL450721    EFN80621.1    PYGN01000696    PSN42107.1   

Proteomes

UP000005204    UP000283053    UP000007151    UP000218220    UP000053268    UP000008820    + More
UP000075883    UP000075920    UP000075900    UP000076408    UP000075885    UP000075880    UP000235965    UP000183832    UP000009046    UP000076858    UP000008237    UP000245037   

PRIDE

H9JLN5   

Pfam

PF06468   Spond_N        + More
PF02014   Reeler
PF00090   TSP_1
PF00014   Kunitz_BPTI

Interpro

IPR042307   Reeler_sf        + More
IPR038678   Spondin_N_sf       
IPR002861   Reeler_dom       
IPR000884   TSP1_rpt       
IPR036383   TSP1_rpt_sf       
IPR009465   Spondin_N       
IPR036880   Kunitz_BPTI_sf       
IPR002223   Kunitz_BPTI       
IPR020901   Prtase_inh_Kunz-CS       

SUPFAM

SSF82895   SSF82895        + More
SSF57362   SSF57362       

Gene 3D

2.60.40.2130     2.60.40.4060     2.20.100.10     4.10.410.10    

CDD

cd08544  Reeler
cd00109  KU

ProteinModelPortal

H9JLN5   A0A2H1VRZ9   A0A3S2PHU8   A0A212EH32   A0A2A4K2N3   A0A2A4K1M3   + More
A0A3S2NIG3   A0A194PHX8   A0A2H1VQ85   U5EYT8   Q170L4   A0A023F2I8   A0A182M9X5   A0A182W944   A0A182R5C7   A0A182Y1R5   A0A182PBS9   A0A2M4CJ21   A0A182JBS3   A0A0P5PL34   A0A1Q3FPJ2   A0A1Q3FP78   A0A2J7PR62   A0A1B6JTC9   A0A1J1IVV5   A0A0P5R1Y0   A0A224XEU1   A0A2J7PR48   A0A2J7PR47   A0A0P6FLY3   A0A2J7PR63   A0A0P5EHT2   A0A0P5A418   A0A0P6FNM0   A0A0P5H4F8   A0A0P5SZF3   A0A0P5EMH8   A0A0N8CXC5   A0A0P5Z9I4   A0A0P5EU30   A0A0P5AL01   A0A0P4ZG86   A0A0P5QQF6   A0A0N8CEJ0   A0A0P5PPB9   A0A0P5WQD1   A0A0N8ARA9   A0A0P5MPN1   A0A0P6GS18   A0A0P6DCY0   A0A0P5I8X5   A0A0P5CIT8   A0A0P5SCA1   A0A0N8AJJ8   A0A0P5TWQ4   A0A0P5G5S6   A0A0N8BMI8   A0A0P5K323   A0A0N8BPV7   A0A0P5S9E5   A0A0P6EAL7   A0A0P5UAZ6   A0A0P5E4B7   A0A0P5MWG3   A0A0P5XD67   A0A0P5UGB3   A0A0P5T3I4   A0A336LL51   A0A0P6CTJ0   A0A0P5IU67   A0A0P5KVB3   A0A0P6I4P9   A0A0P5KSU2   A0A0P5TFB0   E0VCJ0   A0A164MD69   E2BUL2   A0A2P8YCY1  

PDB

3Q13     E-value=3.38562e-33,     Score=356

KEGG

101740935    no KO assigned | (RefSeq) spondin-1-like

GO

GO:0004867   GO:0016021   GO:0004064  

Length:

567

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0046

Exp number, first 60 AAs:

0.00419

Total prob of N-in:

0.00094

outside

1  -  567

 

 

Pi

205.70304

Theta

169.506872

Tajima's D

0.663824

CLR

0.126192

CSRT

0.56067196640168

Interpretation

Uncertain