Gene

KWMTBOMO07073

Pre Gene Modal

BGIBMGA010436

Annotation

PREDICTED:_spondin-2-like_[Bombyx_mori]

Location

Bomo_Chr12(-):3136916-3147297      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.464

CDS

ATGCATTCGAAGAAGTTATTCGGTATTCGTGGAGTTGTTTTCCTGACGTTATTGTTCGGTTTAAGTGTTTGCGATGAAGACGTCTGCAATCGGCGACCGCTCGGGACTAAGACGGATCCGCTACCACCTGACAATCAGTTCCTCATTGAAATAAACGGATTAATTGAAAACCTTTATATACCGAAGAAAGAGTACATAGTACGTTTGAGATCGAGAGATGCCAAATCAACTTTCATAGCGTTTACGATAGCACTGAAAGAGGACACGCTGCCGAATAGGAACAACCCCCGGAAACCGATCCATTTGAACGCTGGACGTTTGACGCTGATGCCGAACTCTACCACGACTAGATACAAGCAGCATTGCGATGATACTGTTGTCGAATTGGATATAACGCCGAAAACTTTTGTGGAGGCACTTTGGACGGCTCCGGACAAGGACAACAAATGCGTTACAGTTTTCGCGGTGGTAGCTGTACAACCCGATGTCTGGTATAATTACGAAGGTCCGCTGTCAAAATGGATCTGCGAAGATAGGCGAAAGGCTGACGATATACAGCCTTTAGAAAATGACAACTGCCAAGCTTGTGAAGATGCAAGGTACCAGTTGACCTTCGAAGGTACATGGTCGTACAACACGCATCCATCGCTGTTTCCGAAATCCCGGGAACTGGCCCGGTTCAGTGACGTAGTCGGAGCATCGCACAGCAAAGACTTCAGCCTTTACAAATATACTTCTGAAGCTAGTTTAGGCTTGAAATTGTTGGCCGAACAAGGGAATAGTACTAAATTAGAGATCGAAATACAAAAACAGCTAGGTACATCTGTACGGACCGTGATCAAGGCATCAGCTCCTTACAACACAAGCATGTCAACGGTCACGAATTTTCGGGCTACGAGAGAACACCATCTAATTTCATTGGCAACGGCGTTGCTTCCATCGCCGGACTGGTTCCTCGGAGTCGCGAATTTAGAGTTATGCAGCATCAAGACCAATCAATGGACCGAAAACATAACTTTCAACTTGTATCCAATGGATGCTGGAACTGATAAGGGTTTGACTTTTGAGGCACCGAACGAGGAAATGTCCCCGCCACAGCCTATTTCTCCTGCGAAGTTCATTAAAGAAATACCAAAAGAGTTGATGAAGCCATTCGCTAGACTTAGATTGAAGCTGGTTCGAACATATAGTACTACTAATTGTTCCATGGAAATTGAGGAACCAGTCACAAGCGAAGGTGATAATGATGCTGATGCCGGAAATGACAAAGATAGAGAGCATAATTATATAACTGATCCTCCAGTGACCACTCCGCCGACAACAACGACAAGCGAAGAGCCACCGTCCGTCGATCCGGCATCACCGGATGACTGTCCACTATCAACGTGGGAAGAATGGTTTCCTTGCCAAGGAGTATGTAACGACGGGAAAATCAAAGGAATACAAATACGATTGCGATACCGCATGGTAGATGGTGTAGCTGTTGGAAAATATTTCGGTGAGGAACAAAAAGAATCACAAACACCAGAGGAATGTTTAGATAAATACAGTCTTAGCGACACTAGGGAATGTGAGGAAACATGCGATAACGAATCGGAAGTTGACGAAGATAACGTTTGGGATGACACAACATCCGAACTTGACGAACAAGCTGTAAAATAA

Protein

MHSKKLFGIRGVVFLTLLFGLSVCDEDVCNRRPLGTKTDPLPPDNQFLIEINGLIENLYIPKKEYIVRLRSRDAKSTFIAFTIALKEDTLPNRNNPRKPIHLNAGRLTLMPNSTTTRYKQHCDDTVVELDITPKTFVEALWTAPDKDNKCVTVFAVVAVQPDVWYNYEGPLSKWICEDRRKADDIQPLENDNCQACEDARYQLTFEGTWSYNTHPSLFPKSRELARFSDVVGASHSKDFSLYKYTSEASLGLKLLAEQGNSTKLEIEIQKQLGTSVRTVIKASAPYNTSMSTVTNFRATREHHLISLATALLPSPDWFLGVANLELCSIKTNQWTENITFNLYPMDAGTDKGLTFEAPNEEMSPPQPISPAKFIKEIPKELMKPFARLRLKLVRTYSTTNCSMEIEEPVTSEGDNDADAGNDKDREHNYITDPPVTTPPTTTTSEEPPSVDPASPDDCPLSTWEEWFPCQGVCNDGKIKGIQIRLRYRMVDGVAVGKYFGEEQKESQTPEECLDKYSLSDTRECEETCDNESEVDEDNVWDDTTSELDEQAVK

Uniprot

H9JLN5   A0A2H1VQ85   A0A2A4K1M3   A0A3S2NIG3   A0A194PHX8   A0A194QTN9   + More
A0A0L7LTX0   A0A2H1VRZ9   A0A3S2PHU8   A0A212EH32   A0A182MYL4   A0A1B6F720   A0A1L8E3B7   A0A1L8E3B6   A0A1B6JTC9   A0A182Y1R5   A0A182R5C7   A0A182JZY3   A0A182PBS9   A0A2M4CJ21   A0A182W944   A0A182M9X5   A0A182FU59   A0A182QL14   A0A182HQ46   A0A182UWY8   A0A182TS53   A0A182KSL1   A0A182JBS3   A0A182XNC5   A0A1B0EWS7   A0A1B6G9H8   Q170L4   A0A1Q3FPJ2   A0A1Q3FP78   U5EYT8   A0A0P4W445   A0A023F2I8   A0A2J7PR62   Q7Q082   A0A2J7PR47   A0A2J7PR48   A0A2J7PR63   A0A0P4VWU6   A0A0P4W243   A0A224XEU1   V5GQI0   A0A336LL51   A0A1J1IVV5   A0A2P2HWJ3   A0A131YJI2   A0A224Y7S0   A0A147BHW8   A0A1Y1JWI6   A0A1W4U6S0  

Pubmed

19121390    26354079    26227816    22118469    25244985    20966253    + More
17510324    25474469    12364791    26830274    28797301    29652888    28004739   

EMBL

BABH01005319    BABH01005320    BABH01005321    ODYU01003798    SOQ43005.1    NWSH01000232    + More
PCG78165.1    RSAL01000028    RVE51861.1    KQ459603    KPI92922.1    KQ461194    KPJ06911.1    JTDY01000095    KOB78897.1    SOQ43004.1    RVE51860.1    AGBW02014975    OWR40793.1    GECZ01023720    JAS46049.1    GFDF01000867    JAV13217.1    GFDF01000866    JAV13218.1    GECU01005533    JAT02174.1    GGFL01000700    MBW64878.1    AXCM01008352    AXCN02001040    APCN01003292    AJWK01006547    AJWK01006548    AJWK01006549    GECZ01010684    JAS59085.1    CH477472    EAT40381.1    GFDL01005525    JAV29520.1    GFDL01005644    JAV29401.1    GANO01000077    JAB59794.1    GDRN01090813    JAI60406.1    GBBI01003473    JAC15239.1    NEVH01022633    PNF18806.1    AAAB01008986    EAA00346.3    PNF18807.1    PNF18808.1    PNF18809.1    GDRN01090815    JAI60405.1    GDRN01090812    JAI60407.1    GFTR01008128    JAW08298.1    GALX01002067    JAB66399.1    UFQT01000038    SSX18435.1    CVRI01000059    CRL03842.1    IACF01000366    LAB66149.1    GEDV01009957    JAP78600.1    GFPF01000413    MAA11559.1    GEGO01005005    JAR90399.1    GEZM01102876    JAV51755.1   

Proteomes

UP000005204    UP000218220    UP000283053    UP000053268    UP000053240    UP000037510    + More
UP000007151    UP000075884    UP000076408    UP000075900    UP000075881    UP000075885    UP000075920    UP000075883    UP000069272    UP000075886    UP000075840    UP000075903    UP000075902    UP000075882    UP000075880    UP000076407    UP000092461    UP000008820    UP000235965    UP000007062    UP000183832    UP000192221   

PRIDE

H9JLN5   

Pfam

PF06468   Spond_N        + More
PF02014   Reeler
PF16752   TBCC_N
PF07986   TBCC
PF00090   TSP_1
PF00014   Kunitz_BPTI

Interpro

IPR042307   Reeler_sf        + More
IPR038678   Spondin_N_sf       
IPR002861   Reeler_dom       
IPR000884   TSP1_rpt       
IPR036383   TSP1_rpt_sf       
IPR009465   Spondin_N       
IPR038397   TBCC_N_sf       
IPR017901   C-CAP_CF_C-like       
IPR012945   Tubulin-bd_cofactor_C_dom       
IPR031925   TBCC_N       
IPR006599   CARP_motif       
IPR016098   CAP/MinC_C       
IPR002223   Kunitz_BPTI       
IPR036880   Kunitz_BPTI_sf       
IPR020901   Prtase_inh_Kunz-CS       

SUPFAM

SSF82895   SSF82895        + More
SSF57362   SSF57362       

Gene 3D

2.60.40.2130     2.60.40.4060     2.20.100.10     1.20.58.1250     2.160.20.70     4.10.410.10    

CDD

cd08544  Reeler
cd00109  KU

ProteinModelPortal

H9JLN5   A0A2H1VQ85   A0A2A4K1M3   A0A3S2NIG3   A0A194PHX8   A0A194QTN9   + More
A0A0L7LTX0   A0A2H1VRZ9   A0A3S2PHU8   A0A212EH32   A0A182MYL4   A0A1B6F720   A0A1L8E3B7   A0A1L8E3B6   A0A1B6JTC9   A0A182Y1R5   A0A182R5C7   A0A182JZY3   A0A182PBS9   A0A2M4CJ21   A0A182W944   A0A182M9X5   A0A182FU59   A0A182QL14   A0A182HQ46   A0A182UWY8   A0A182TS53   A0A182KSL1   A0A182JBS3   A0A182XNC5   A0A1B0EWS7   A0A1B6G9H8   Q170L4   A0A1Q3FPJ2   A0A1Q3FP78   U5EYT8   A0A0P4W445   A0A023F2I8   A0A2J7PR62   Q7Q082   A0A2J7PR47   A0A2J7PR48   A0A2J7PR63   A0A0P4VWU6   A0A0P4W243   A0A224XEU1   V5GQI0   A0A336LL51   A0A1J1IVV5   A0A2P2HWJ3   A0A131YJI2   A0A224Y7S0   A0A147BHW8   A0A1Y1JWI6   A0A1W4U6S0  

PDB

3Q13     E-value=8.02378e-32,     Score=344

KEGG

101740793    no KO assigned | (RefSeq) spondin-2-like

GO

GO:0000902   GO:0015631   GO:0004867   GO:0016021   GO:0031012   GO:0007155  

SignalP

Position:   1 - 24,         Likelihood:  0.977716

 

 

Length:

553

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

3.38348

Exp number, first 60 AAs:

3.37595

Total prob of N-in:

0.18315

outside

1  -  553

 

 

Pi

207.849585

Theta

156.852676

Tajima's D

0.498639

CLR

0.167939

CSRT

0.512574371281436

Interpretation

Uncertain