Gene

KWMTBOMO07072

Pre Gene Modal

BGIBMGA010437

Annotation

PREDICTED:_tubulin-specific_chaperone_C_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr12(-):3130791-3132977      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.834

CDS

ATGAATGATAAACATTCTGTCTTAGAACGTCTGAGCCGCAGAGATGCTCAGAGATTAGAAAAACTACAGAAGGCGCATAAGGCAAGAGAAGAAGTAGATGCATGTGATGAAAACGAAGATTACTTTTCGGGTTCATTTAAAATCAAATCTGAATATGTTGAAGATCTTTTAGCTCAAGTACCAACAATAGACAACAGCATGCTCCCATCTCACTTTGACATCATCAAAAAGGAAATTAATGAACTACAGAAATATGTGGTAACATCAACATTTTTCCTTAAGGAATTCAATTTGAGAAAATTTCTTGGCATTGTGCAAAATTTACAAACTAAATGTTATGAATTAGAAGACAGATATGTTCCTCGCAAGAAATTTGGCTTTTCAAAGAAAAAGCTTCCAAAATCTCATAGTCAAAAACAAAATTTAATGGATGAAGCTGATGGAGCAGCTAAAAAAGACAGTAACAAATGGGATGAAAATCTATTTGGATTCAGTTCAAAAGAAAATGAAGTTTTGCTCTTAGAAAATGATGAATTGTACCGAAGAGATGTGGCTTTACGTAATTTGAAAAATTGCACTATAGGTCTCAAAGGTTTAATGGGAACATTACATTTGATCAATTTGGAAAACTGCATAGTTCTTTCTGGGCCGGTAACATCATCAGTATTTGTTGATAAGTGCACAAATTGTAAAATAGTTATTGCATGCCAACAGCTTCGTATGCACACATCAACAAAGTGTGATGTTTATTTGCATGTAACTAGTAAAGGTATTGTAGAGGACTGTTCCCAAATACGCACAGCACCATATAATTTGTTCTATGATAACTTGGAGAAGCATTATGAATCATCCAGTTTAGATAGAAATTCAAATAACTGGGATAATTTGGATGATTTTAATTGGTTAGCTCCTGATGTAAGTTCACCAAATTGGTCGGTTTTAGATGTTTCCGAAAGAATTGATTCATGGGACGATTGGTGGTCTAAGATTCCTTTGTAA

Protein

MNDKHSVLERLSRRDAQRLEKLQKAHKAREEVDACDENEDYFSGSFKIKSEYVEDLLAQVPTIDNSMLPSHFDIIKKEINELQKYVVTSTFFLKEFNLRKFLGIVQNLQTKCYELEDRYVPRKKFGFSKKKLPKSHSQKQNLMDEADGAAKKDSNKWDENLFGFSSKENEVLLLENDELYRRDVALRNLKNCTIGLKGLMGTLHLINLENCIVLSGPVTSSVFVDKCTNCKIVIACQQLRMHTSTKCDVYLHVTSKGIVEDCSQIRTAPYNLFYDNLEKHYESSSLDRNSNNWDNLDDFNWLAPDVSSPNWSVLDVSERIDSWDDWWSKIPL

Uniprot

H9JLN6   A0A1E1W7X5   A0A2A4K1P7   S4PDP3   A0A194PJM5   A0A212EH44   + More
A0A194QNH5   A0A0L7LTX0   D2A1K6   A0A067R3R8   A0A0C4URE0   U4UUB7   A0A0T6AYV4   N6TQY4   A0A1Y1K5Q5   A0A1S3HD74   A0A0M8ZRW0   A0A1W4X219   E2BFJ3   E2APQ6   A0A1S3HML1   K7IWH1   A0A088AAY1   A0A232FDG5   A0A2A3EEB1   V9IJK8   A0A026WL76   A0A195E244   A0A195CN74   A0A151JVG9   A0A151WGQ6   V9KXV9   K4GLL9   A0A1L8E572   A0A3B4AJ08   W4Z2R5   A0A2C9JVM6   F4X0X0   H3BDX1   W5NLG1   A0A158N9F7   A0A023EQD5   A0A2T7NYB2   K4FY42   A0A3N0XNN6   A0A2J7PK76   A0A154PFX0   A0A3B3BKM7   A0A1B0CQZ5   A0A182G0P9   A0A1B6DSI0   A0A2U9CN41   A0A151HZ60   C3ZQC0   A0A3B4Z547   H2MX40   I3KY93   A0A3B4F6B1   A0A0E9X5B7   A0A2K6BG00   A0A3P9B8H8   A0A3B3SHQ8   A0A1B0DB62   A0A3Q3BW06   A0A3P8RCL9   A0A1W4ZLW3   G3NFV9   A0A3P8W3C6   A0A3B4ELI1   A0A1L8EIC3   A0A3Q3A6H1   H2ZJ53   A0A1L8EII5   Q0IF54   A0A182X0F0   A0A3Q1HFV9   A0A182VUX3   A0A3Q0RV51   A0A1S4HE66   A0A2K5NU45   A0A182IE64   A0A182RGD3   A0A2K5XV01   G7MPC3   E0VZF4   F1RUS8   F7BNI0   I2CY78   A0A1S4FDV9   A0A369SA37   A0A0L8FZC9   A0A3Q4H0B7   A0A2K5W8E9   A0A096MKM5   B3S3X9   A0A182PA81   A0A2K5IG59   A0A182ULK2   A0A182R1C5   A0A3Q2Z3R6  

Pubmed

19121390    23622113    26354079    22118469    26227816    18362917    + More
19820115    24845553    25692689    23537049    28004739    20798317    20075255    28648823    24508170    30249741    24402279    23056606    25463417    15562597    21719571    9215903    21347285    24945155    29451363    26483478    18563158    17554307    25186727    25613341    29240929    24487278    17510324    12364791    22002653    20566863    17431167    25319552    30042472    18719581   

EMBL

BABH01005317    GDQN01008007    GDQN01001868    GDQN01000096    JAT83047.1    JAT89186.1    + More
JAT90958.1    NWSH01000232    PCG78167.1    GAIX01003586    JAA88974.1    KQ459603    KPI92924.1    AGBW02014975    OWR40791.1    KQ461194    KPJ06909.1    JTDY01000095    KOB78897.1    KQ971338    EFA02681.1    KK852723    KDR17688.1    KJ534556    AIY54297.1    KB632373    ERL93786.1    LJIG01022522    KRT80132.1    APGK01058090    KB741286    ENN70731.1    GEZM01095076    JAV55520.1    KQ435881    KOX69855.1    GL448037    EFN85515.1    GL441573    EFN64582.1    NNAY01000440    OXU28387.1    KZ288267    PBC30067.1    JR050343    AEY61245.1    KK107154    QOIP01000001    EZA56807.1    RLU27165.1    KQ979814    KYN18974.1    KQ977565    KYN01922.1    KQ981713    KYN37380.1    KQ983152    KYQ47020.1    JW871513    AFP04031.1    JX212523    AFM90837.1    GFDF01000268    JAV13816.1    AAGJ04112738    GL888503    EGI59912.1    AFYH01017047    AHAT01001701    ADTU01009631    GAPW01002295    JAC11303.1    PZQS01000008    PVD26168.1    JX052689    AFK10917.1    RJVU01067793    ROI81947.1    NEVH01024940    PNF16736.1    KQ434886    KZC10080.1    AJWK01024246    JXUM01037127    JXUM01037128    JXUM01037129    JXUM01037130    JXUM01037131    GEDC01008664    JAS28634.1    CP026260    AWP17978.1    KQ976712    KYM76974.1    GG666661    EEN45176.1    AERX01030861    GBXM01010808    JAH97769.1    AJVK01004625    AJVK01004626    AJVK01004627    GFDG01000395    JAV18404.1    GFDG01000396    JAV18403.1    CH477394    EAT41884.1    AAAB01008839    APCN01004570    CM001256    EHH18337.1    DS235852    EEB18760.1    AEMK02000055    JSUE03030892    JV667250    AFJ71913.1    NOWV01000035    RDD43649.1    KQ425015    KOF70101.1    AQIA01051831    AHZZ02024664    DS985249    EDV22547.1    AXCN02000858   

Proteomes

UP000005204    UP000218220    UP000053268    UP000007151    UP000053240    UP000037510    + More
UP000007266    UP000027135    UP000030742    UP000019118    UP000085678    UP000053105    UP000192223    UP000008237    UP000000311    UP000002358    UP000005203    UP000215335    UP000242457    UP000053097    UP000279307    UP000078492    UP000078542    UP000078541    UP000075809    UP000261520    UP000007110    UP000076420    UP000007755    UP000008672    UP000018468    UP000005205    UP000245119    UP000235965    UP000076502    UP000261560    UP000092461    UP000069940    UP000246464    UP000078540    UP000001554    UP000261400    UP000001038    UP000005207    UP000261460    UP000233120    UP000265160    UP000261540    UP000092462    UP000264840    UP000265100    UP000192224    UP000007635    UP000265120    UP000261440    UP000264800    UP000007875    UP000008820    UP000076407    UP000265040    UP000075920    UP000261340    UP000233060    UP000075840    UP000075900    UP000233140    UP000009046    UP000008227    UP000006718    UP000253843    UP000053454    UP000261580    UP000233100    UP000028761    UP000009022    UP000075885    UP000233080    UP000075902    UP000075886    UP000264820   

PRIDE

H9JLN6    F1RUS8   

Pfam

PF07986   TBCC        + More
PF16752   TBCC_N
PF06468   Spond_N
PF02014   Reeler

Interpro

IPR031925   TBCC_N        + More
IPR006599   CARP_motif       
IPR027684   TBCC       
IPR016098   CAP/MinC_C       
IPR038397   TBCC_N_sf       
IPR017901   C-CAP_CF_C-like       
IPR012945   Tubulin-bd_cofactor_C_dom       
IPR042307   Reeler_sf       
IPR038678   Spondin_N_sf       
IPR002861   Reeler_dom       
IPR036383   TSP1_rpt_sf       
IPR009465   Spondin_N       
IPR036223   CAP_C_sf       

SUPFAM

SSF82895   SSF82895        + More
SSF69340   SSF69340       

Gene 3D

1.20.58.1250     2.160.20.70     2.20.100.10     2.60.40.2130     2.60.40.4060    

ProteinModelPortal

H9JLN6   A0A1E1W7X5   A0A2A4K1P7   S4PDP3   A0A194PJM5   A0A212EH44   + More
A0A194QNH5   A0A0L7LTX0   D2A1K6   A0A067R3R8   A0A0C4URE0   U4UUB7   A0A0T6AYV4   N6TQY4   A0A1Y1K5Q5   A0A1S3HD74   A0A0M8ZRW0   A0A1W4X219   E2BFJ3   E2APQ6   A0A1S3HML1   K7IWH1   A0A088AAY1   A0A232FDG5   A0A2A3EEB1   V9IJK8   A0A026WL76   A0A195E244   A0A195CN74   A0A151JVG9   A0A151WGQ6   V9KXV9   K4GLL9   A0A1L8E572   A0A3B4AJ08   W4Z2R5   A0A2C9JVM6   F4X0X0   H3BDX1   W5NLG1   A0A158N9F7   A0A023EQD5   A0A2T7NYB2   K4FY42   A0A3N0XNN6   A0A2J7PK76   A0A154PFX0   A0A3B3BKM7   A0A1B0CQZ5   A0A182G0P9   A0A1B6DSI0   A0A2U9CN41   A0A151HZ60   C3ZQC0   A0A3B4Z547   H2MX40   I3KY93   A0A3B4F6B1   A0A0E9X5B7   A0A2K6BG00   A0A3P9B8H8   A0A3B3SHQ8   A0A1B0DB62   A0A3Q3BW06   A0A3P8RCL9   A0A1W4ZLW3   G3NFV9   A0A3P8W3C6   A0A3B4ELI1   A0A1L8EIC3   A0A3Q3A6H1   H2ZJ53   A0A1L8EII5   Q0IF54   A0A182X0F0   A0A3Q1HFV9   A0A182VUX3   A0A3Q0RV51   A0A1S4HE66   A0A2K5NU45   A0A182IE64   A0A182RGD3   A0A2K5XV01   G7MPC3   E0VZF4   F1RUS8   F7BNI0   I2CY78   A0A1S4FDV9   A0A369SA37   A0A0L8FZC9   A0A3Q4H0B7   A0A2K5W8E9   A0A096MKM5   B3S3X9   A0A182PA81   A0A2K5IG59   A0A182ULK2   A0A182R1C5   A0A3Q2Z3R6  

PDB

2YUH     E-value=1.46317e-30,     Score=331

KEGG

101735477    K21766 tubulin-specific chaperone C | (RefSeq) tubulin-specific chaperone C

GO

GO:0000902   GO:0005525   GO:0007023   GO:0015631   GO:0016021   GO:0006457   GO:0007021   GO:0005737   GO:0003924   GO:0005829   GO:0032391   GO:0000287   GO:0005634   GO:0008270   GO:0005515   GO:0004319   GO:0004320   GO:0016295   GO:0016296  

PANTHER

PTHR15139  

Length:

332

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.06043

Exp number, first 60 AAs:

0

Total prob of N-in:

0.03516

outside

1  -  332

 

 

Pi

249.301412

Theta

237.039891

Tajima's D

0.112613

CLR

0

CSRT

0.4024798760062

Interpretation

Uncertain