Silkworm Genome Informatics Database

Gene

KWMTBOMO07067

Pre Gene Modal

BGIBMGA010441

Annotation

PREDICTED:_PCTP-like_protein_[Bombyx_mori]

Location

Bomo_Chr12(-):3037847-3094447 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 1.728 Nuclear Reliability : 1.679

CDS

ATGGGCGCCGCGGGATGGGCGCGCGGTGAAGCCCGCGTGGCCGACGACTCCGACTTCGAAACCCTGAAGAGTCTGCTGGCTTCGGACCGCGGCTGGACCCTCGAGTACGAGCGCGACGGCGTCAAGGTCTGGGTGGAGGATGCGGCCCACGGCGCGCTCAGAACCGTCAAGGTGGTGGCGGAGTTTGGAGATGTGGAACCGGATGCGCTGTACGACGTGCTGCACGACCCCGAGTACAGATCCGTCTGGGACACGCACATGCTGGCCGCCGAGGACGCTGGACACATCAACGTTAATAACGACGTTGGGTATTACGCAATGTCGTGTCCGGCGCCACTCAAGAATCGCGATTTCGTGCTGCAACGCTCCTGGCTGGATACGGGTGATGAGAAGATGATCCTCAACCATTCAGTGTATCACAAAGATTTTCCGCCTAGAAAAGGATTTGTGAGAGCCTTATCACTCTTGACCGGGTTCGTGGTGAGGAGCCGGGAGGGCGTCGGAAGTTGGCTGGGGTACGTGTCACGGTCGGATCCCAGGGGAGCCCTTCCGGCATGGCTTGTTAACAGAGTAACAGCCCAGTTAGCTCCGAGATTAGTGCAGCAATTACACGCAGCGGCTCGAAGGTATCCTGGATGGAAAGCCCTCACCGACTACCCCTACCACAAACCCTGGAGGCACCCGGAGCAAGTACCGCCTTACAGAATATCCTTGGATGATTGTGTAGATCCTGATGCGCCACCGCCTCCTGAAAATCCAAAACCCGATACATCCAAAACAAAACTAGACGTGCCGCAGCACAGCGAAGCGGAGAGCCACAGCATCGAAGATCTCGGGGACTTATCGTCAGAGTTCAGTGTGGAAGTTGAAGAGGACGTACCGGACCCCGCTCAAGATCCCACAAAGAAGAAAGGAAAGTTCTACAGGCTGGTGAAAACGATGAAGAATCGACGGAAAAGCGTGCAAGTTGCGAAATCTGCCGACAGCTTGACGGAGGCGAAGTCCGAGGAAAAACAAGAAAAGAAGAAAACGTTCAAGTTCCATAGAAGATTCAGCCTCAGCAGGGGAAGGGAAGATTGA

Protein

MGAAGWARGEARVADDSDFETLKSLLASDRGWTLEYERDGVKVWVEDAAHGALRTVKVVAEFGDVEPDALYDVLHDPEYRSVWDTHMLAAEDAGHINVNNDVGYYAMSCPAPLKNRDFVLQRSWLDTGDEKMILNHSVYHKDFPPRKGFVRALSLLTGFVVRSREGVGSWLGYVSRSDPRGALPAWLVNRVTAQLAPRLVQQLHAAARRYPGWKALTDYPYHKPWRHPEQVPPYRISLDDCVDPDAPPPPENPKPDTSKTKLDVPQHSEAESHSIEDLGDLSSEFSVEVEEDVPDPAQDPTKKKGKFYRLVKTMKNRRKSVQVAKSADSLTEAKSEEKQEKKKTFKFHRRFSLSRGRED

Uniprot

A0A194PHY9 A0A212FA94 E9IA51

Pubmed

26354079 22118469 21282665

EMBL

KQ459603 KPI92932.1 AGBW02009505 OWR50657.1 GL761987 EFZ22531.1 + More

Proteomes

UP000053268 UP000007151

Pfam

PF01852 START

Interpro

IPR041951   STARD10_START        + More
IPR002913   START_lipid-bd_dom
IPR023393   START-like_dom_sf

Gene 3D

3.30.530.20

CDD

cd08871 START_STARD10-like

ProteinModelPortal

A0A194PHY9 A0A212FA94 E9IA51

PDB

1LN3 E-value=1.79395e-09, Score=149

KEGG

101740648 no KO assigned | (RefSeq) PCTP-like protein

GO

GO:0008289 GO:0016868 GO:0000287 GO:0005634 GO:0008270 GO:0005515 GO:0004319 GO:0004320 GO:0016295 GO:0016296

Length:

359

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00158

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01033

outside

1 - 359

Pi

199.046803

Theta

177.346528

Tajima's D

1.897107

CLR

0.180102

CSRT

0.858807059647018

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics