Silkworm Genome Informatics Database

Gene

KWMTBOMO07059

Annotation

PREDICTED:_cGMP-dependent_3'?5'-cyclic_phosphodiesterase-like_[Bombyx_mori]

Location

Bomo_Chr12(+):2942555-2944838 View in EpiBrowser

Full name

Phosphodiesterase

Location in the cell

Cytoplasmic Reliability : 1.076 Extracellular Reliability : 1.666 Nuclear Reliability : 1.083

CDS

ATGGAAGCGTACATAGAGGCAATAGGATCGACATTGCTGCAGAGAAAATATAACATCCAAATGCCGTTAAAATTAATTGAAACACTCAAATCGTCTGGAGATCAAACTGATTTATTGAACAATTTTGAAACAGACTTCCAGACAATATTGGCTCCGTACTTCCCCAAAGACAGTTCTAAGAAGCGTCTTGTTCTCTATCCGGTGATTGACAAGCCCTTCTCAGTTATTGTCTGCGTGGTAGCCCCAAAAACGTCTGAGGACGCAGTGCCGGTCATCATTCGTGAATGCTTCTTATTCACTTGGCCGACGTTGAAGAAGGCCATTTCTCTAGAGCACGAATGCTCGTTGAAACAGAAGTGCCAGCAGTTGTTGAAGGTTGCCAAAAGACTATTTACCCAAGCGTTATTAGTAGTTAGAGATGTTAGGGAAGAGCATACAGTTCAAACTTTGACCAAGGGTATCGCGACAGAATTTGATTTTTTATATTTCTAG

Protein

MEAYIEAIGSTLLQRKYNIQMPLKLIETLKSSGDQTDLLNNFETDFQTILAPYFPKDSSKKRLVLYPVIDKPFSVIVCVVAPKTSEDAVPVIIRECFLFTWPTLKKAISLEHECSLKQKCQQLLKVAKRLFTQALLVVRDVREEHTVQTLTKGIATEFDFLYF

Cofactor

a divalent metal cation

Similarity

Belongs to the cyclic nucleotide phosphodiesterase family.

Uniprot

A0A2A4J9P4 H9JLW9 A0A2H1VME5 A0A3S2M662 A0A194PHP8 A0A194QTM5 + More
A0A0L7LMH7 A0A0T6B7C6 A0A183PEW8 E2B075 A0A094ZED4

EC Number

3.1.4.-

Pubmed

19121390 26354079 26227816 20798317 22246508

EMBL

NWSH01002283 PCG68681.1 BABH01005299 ODYU01003339 SOQ41966.1 RSAL01000028 + More
RVE51872.1 KQ459603 KPI92941.1 KQ461194 KPJ06896.1 JTDY01000537 KOB76748.1 LJIG01009614 KRT82727.1 UZAL01032930 VDP62178.1 GL444408 EFN60932.1 KL250493 KGB32122.1

Proteomes

UP000218220 UP000005204 UP000283053 UP000053268 UP000053240 UP000037510 + More
UP000050791 UP000000311

PRIDE

H9JLW9

Pfam

PF01590   GAF        + More
PF00233   PDEase_I
PF13185   GAF_2

Interpro

IPR002073   PDEase_catalytic_dom        + More
IPR029016   GAF-like_dom_sf
IPR036971   PDEase_catalytic_dom_sf
IPR003607   HD/PDEase_dom
IPR023174   PDEase_CS
IPR023088   PDEase
IPR003018   GAF

Gene 3D

1.10.1300.10 3.30.450.40

CDD

cd00077 HDc

ProteinModelPortal

A0A2A4J9P4 H9JLW9 A0A2H1VME5 A0A3S2M662 A0A194PHP8 A0A194QTM5 + More
A0A0L7LMH7 A0A0T6B7C6 A0A183PEW8 E2B075 A0A094ZED4

PDB

3IBJ E-value=0.00214412, Score=92

KEGG

101740240 K18283 cGMP-dependent 3',5'-cyclic phosphodiesterase [EC:3.1.4.17] | (RefSeq) cGMP-dependent 3',5'-c

GO

GO:0046872 GO:0004114 GO:0007165 GO:0016787 GO:0016021

Length:

163

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01941

Exp number, first 60 AAs:

0

Total prob of N-in:

0.08522

outside

1 - 163

Pi

265.778725

Theta

195.626791

Tajima's D

1.153658

CLR

0

CSRT

0.693065346732663

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics