Gene

KWMTBOMO07049  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA010449

Annotation

PREDICTED:_TBC1_domain_family_member_15_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr12(-):2732749-2744874      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.004

CDS

ATGTCTACGAGTTCGGGAGATGAATTACACGACCAGTACAAAGACTTGTTCACGCAAGACGGGGTACTTCTAAAGACCAGTGTCGGTCGGCCGGTCTCCGATTTCAACTCAATCGGGATGCTCTGCATTGTACAGAACGCCGACGGAACTAAATGCATAGAATGGAGACCGAACGACTTGATCACCATCGATTCCGACACTCAAGATCAAGAATGGGCCGTTGTTAATACCGTTGGTCGCAGACAACGGACCCTAAGCGGTAACATAACATCGGATTACGCGAATCTTCGGGCGCGCATCATAAAAATACCCCTAGACGATTTAAAAACGTTTCGCATCACCCGTAACAACCAACAAATGCAGTTCTCGACGAAACCGGGAGTCTGGCAGAATACGTTCTATTTCCAACATGGAAACGCCGAGATATTCGTGGCCTATCTAAAGAATCACCTTAAGACCGCTAAAACAAGACACGACAGGAACACGTACATGGTGGTCGAACCTAACGACGAGTCCCAGGTCTTGAATAAATCGTTTGCCGAATTAGATATATTTACGGAGAATACGACTGATGTCGTGTGGAATTTGGTTTCTAATTTCAAACAGAGGCCTTACGAAACTACCTTAGAAGCGTTTTCAAAGCTAACGGATATTGTCTACTACGGCAATGAGGATGTAAACGGGAAACGAGACGTTTCAGAGGAGGTCGCCGACTTGTTGACTAAAAGCATGAGCGCTCTCGAGGACACGACCTCGGTCACCAGGAGCGACGAGTACGAGGTCATCAGCGTGAAGCCAACGTTGCCTCCCCGGCCGTGTATACCCAGAGGTTCGCCACTGTCCACTGAAAAATGGGACGCCTTGCAAGACGCGGACGGTAGGATCGTGGAGGTGGAGGGAGTCAAGCAACTCATATTCAGGGGAGGTGTTGCACATTCTATACGCAGCACCGTATGGAAGTATCTCTTGGACTATTTCCCCTGGAAGATGACGCATGCAGAATTAAAAACGTTACAGAAGAGAAAAACCGAGGAATACTTCTCTATGAAACTCCAATGGAGGTCTGTGACCGAGGGGCAGGAGAATAGGTTCTCTGAGTATAGAGACAGGAAGAGTTTGGTCGAGAAGGATGTGAACAGAACGGACAGGACTCACCCGTTTTTCGCGGGGGACAACAACCCCCACTTGGCCGTGCTCCAGGACATCCTGATGACCTACGTCATGTACAACTTCGATCTCGGGTACGTGCAGGGAATGAGCGATATATTGGCGCCTCTGCTGCTGCTGTTAGGAAACGAAGTGGACAGTTTCTGGTGCTTCGTCGGCTTCATGGAGAAAATTGCTTCGAATTTCGACATGGACCAGGCCGGAATGAAGCACCAGCTCTTGCAGCTCCAGCAGCTGCTGATGTTCGCTAGCCCGGAGCTGGCCCAGCACCTGTCACAAAAGGACTCCGGGAACATGTACTTTTGCTTCCGCTGGCTGCTCGTATGGTTCAAAAGGGAATTCTCACACATCGATATCATGAGGCTGTGGGAAGTATTGTGGACGGGGTTACCATGTGCAAATTTTCATTTGTTGATATGCGTTGCCATATTAGATGCAGAAAAAGAAGTTATTATTAGTCGAGATTACGGTTTCACTGAAATATTAAAGCATGTGAACGATCTATCGATGACTTTGGACGTTGACAGGGTACTAAGTTCAGCCGAAGGCATATATCACCAGATAGTTTCAGCCCCGCATTTGACAGATCAAATCAGGATAGTCTTAGGAATCGAGCCATTGAATCTGTCAATGTCAACAAATTCCGACCCTGAGCCCTCTACCTCTACTCTACCCTCTACCAAACCAAGTCAAGTTGAGCTAAAGGAGGGCAACGGTAATACCATTTTTGGTCAAGAAATGGACGAAGATGTAGTCGTATATAATGGATTACGAATAACAATAGTTACGAAAACTGTATGGGCTCTACTCGCCTGA

Protein

MSTSSGDELHDQYKDLFTQDGVLLKTSVGRPVSDFNSIGMLCIVQNADGTKCIEWRPNDLITIDSDTQDQEWAVVNTVGRRQRTLSGNITSDYANLRARIIKIPLDDLKTFRITRNNQQMQFSTKPGVWQNTFYFQHGNAEIFVAYLKNHLKTAKTRHDRNTYMVVEPNDESQVLNKSFAELDIFTENTTDVVWNLVSNFKQRPYETTLEAFSKLTDIVYYGNEDVNGKRDVSEEVADLLTKSMSALEDTTSVTRSDEYEVISVKPTLPPRPCIPRGSPLSTEKWDALQDADGRIVEVEGVKQLIFRGGVAHSIRSTVWKYLLDYFPWKMTHAELKTLQKRKTEEYFSMKLQWRSVTEGQENRFSEYRDRKSLVEKDVNRTDRTHPFFAGDNNPHLAVLQDILMTYVMYNFDLGYVQGMSDILAPLLLLLGNEVDSFWCFVGFMEKIASNFDMDQAGMKHQLLQLQQLLMFASPELAQHLSQKDSGNMYFCFRWLLVWFKREFSHIDIMRLWEVLWTGLPCANFHLLICVAILDAEKEVIISRDYGFTEILKHVNDLSMTLDVDRVLSSAEGIYHQIVSAPHLTDQIRIVLGIEPLNLSMSTNSDPEPSTSTLPSTKPSQVELKEGNGNTIFGQEMDEDVVVYNGLRITIVTKTVWALLA

Uniprot

H9JLP7   A0A2W1BL30   A0A2H1W6T5   A0A1E1WCN4   A0A1E1W2B7   A0A194PHQ3   + More
A0A212FIC0   A0A1Y1KQT1   A0A2J7RC25   A0A151WQT4   E9IQK4   A0A151J196   A0A158NYX6   A0A195BVF4   A0A195FT32   A0A154PAU5   D2A2J8   A0A1W4X1R8   A0A026WDF5   A0A3L8DWS5   A0A067RD98   A0A2J7RC26   A0A088AMZ8   A0A2A3EE34   V5GV59   A0A0L7RDW4   A0A1W4WS45   A0A195D0S0   A0A1B6CAJ1   A0A0M8ZYD8   A0A1B6G5P0   A0A1B6E0S5   A0A1B6MVH7   A0A1B6L3E5   K7J9T2   A0A232EVQ4   A0A2J7RC34   A0A0J7P142   F4W5H6   E2C0H0   A0A1B6GMV3   A0A224X940   A0A069DVG0   A0A0P4VKX6   A0A0V0G4Y8   A0A023F1U4   T1HPL0   A0A1B0DJW6   A0A1L8DLW6   A0A210Q8D9   A0A034WN52   A0A1S3JNQ6   K1PL63   A0A1A9VDR9   A0A0K8TWX7   A0A1S3JPC1   A0A2C9LSD6   A0A2C9LS66   U5EQB4   A0A093EZ24   A0A0B6ZN35   A0A0P7WNE8   A0A1W5B703   A0A1W5B0V3   U3I4M7   A0A3S1I1Y8   A0A093CJD4   G1NE50   A0A091HK56   A0A1J1I6J6   A0A1W5B5V9   A0A093R021   G1NE62   K7FZI2   A0A3Q3BTR5   A0A2S2Q6R3   A0A0K8TNT5   A0A3B4FB82   W5K8E1   F1NBY5   A0A091QMM2   V3ZY25   A0A099ZQS3   A0A2I0UP05   A0A093HHW2   A0A151PFQ9   A0A091MND6   A0A091U4M8   A0A1V4K7F8   A0A087QQ98   B4JBF1  

Pubmed

19121390    28756777    26354079    22118469    28004739    21282665    + More
21347285    18362917    19820115    24508170    30249741    24845553    20075255    28648823    21719571    20798317    26334808    27129103    25474469    28812685    25348373    22992520    15562597    23749191    20838655    17381049    26369729    25329095    15592404    23254933    22293439    17994087   

EMBL

BABH01005279    KZ150015    PZC74991.1    ODYU01006707    SOQ48799.1    GDQN01006292    + More
JAT84762.1    GDQN01010013    JAT81041.1    KQ459603    KPI92946.1    AGBW02008401    OWR53476.1    GEZM01078312    JAV62771.1    NEVH01005887    PNF38393.1    KQ982821    KYQ50168.1    GL764834    EFZ17149.1    KQ980571    KYN15547.1    ADTU01004382    KQ976407    KYM91448.1    KQ981276    KYN43613.1    KQ434864    KZC09025.1    KQ971338    EFA02210.1    KK111572    KK107295    EZA46353.1    EZA53079.1    QOIP01000003    RLU24920.1    KK852532    KDR21856.1    PNF38394.1    KZ288269    PBC30015.1    GALX01004348    JAB64118.1    KQ414613    KOC69009.1    KQ977004    KYN06513.1    GEDC01030009    GEDC01026817    JAS07289.1    JAS10481.1    KQ435824    KOX72123.1    GECZ01012020    JAS57749.1    GEDC01005787    JAS31511.1    GEBQ01000042    JAT39935.1    GEBQ01021802    GEBQ01008286    JAT18175.1    JAT31691.1    AAZX01005570    NNAY01001967    OXU22427.1    PNF38392.1    LBMM01000433    KMQ98370.1    GL887645    EGI70626.1    GL451783    EFN78563.1    GECZ01006004    JAS63765.1    GFTR01007570    JAW08856.1    GBGD01000806    JAC88083.1    GDKW01001575    JAI55020.1    GECL01003025    JAP03099.1    GBBI01003731    JAC14981.1    ACPB03008272    AJVK01001177    AJVK01001178    GFDF01006719    JAV07365.1    NEDP02004628    OWF45003.1    GAKP01001941    JAC57011.1    JH817881    EKC19529.1    GDHF01033546    GDHF01009215    JAI18768.1    JAI43099.1    GANO01004328    JAB55543.1    KK378508    KFV47134.1    HACG01022937    CEK69802.1    JARO02008523    KPP62614.1    ADON01104804    RQTK01000028    RUS90612.1    KL241933    KFV12457.1    KL515096    KFO87733.1    CVRI01000038    CRK94033.1    KL432376    KFW91990.1    AGCU01075294    AGCU01075295    AGCU01075296    AGCU01075297    GGMS01004230    MBY73433.1    GDAI01002033    JAI15570.1    AADN05000096    KK664968    KFQ10699.1    KB203251    ESO85851.1    KL897682    KGL84754.1    KZ505669    PKU47785.1    KL206071    KFV78597.1    AKHW03000416    KYO47774.1    KK831060    KFP76577.1    KK416328    KFQ85381.1    LSYS01004200    OPJ80368.1    KL225807    KFM03402.1    CH916368    EDW03974.1   

Proteomes

UP000005204    UP000053268    UP000007151    UP000235965    UP000075809    UP000078492    + More
UP000005205    UP000078540    UP000078541    UP000076502    UP000007266    UP000192223    UP000053097    UP000279307    UP000027135    UP000005203    UP000242457    UP000053825    UP000078542    UP000053105    UP000002358    UP000215335    UP000036403    UP000007755    UP000008237    UP000015103    UP000092462    UP000242188    UP000085678    UP000005408    UP000078200    UP000076420    UP000034805    UP000192224    UP000016666    UP000271974    UP000001645    UP000183832    UP000007267    UP000264840    UP000261460    UP000018467    UP000000539    UP000030746    UP000053641    UP000053584    UP000050525    UP000190648    UP000053286    UP000001070   

PRIDE

H9JLP7   

Pfam

PF12068   PH_RBD        + More
PF00566   RabGAP-TBC
PF15348   GEMIN8
PF12947   EGF_3
PF07645   EGF_CA
PF00058   Ldl_recept_b
PF07474   G2F
PF06119   NIDO

Interpro

IPR035969   Rab-GTPase_TBC_sf        + More
IPR021935   SGSM1/2_RBD       
IPR000195   Rab-GTPase-TBC_dom       
IPR034754   GEMIN8       
IPR000152   EGF-type_Asp/Asn_hydroxyl_site       
IPR011042   6-blade_b-propeller_TolB-like       
IPR000742   EGF-like_dom       
IPR013032   EGF-like_CS       
IPR006605   G2_nidogen/fibulin_G2F       
IPR003886   NIDO_dom       
IPR009017   GFP       
IPR009030   Growth_fac_rcpt_cys_sf       
IPR024731   EGF_dom       
IPR001881   EGF-like_Ca-bd_dom       
IPR000033   LDLR_classB_rpt       

SUPFAM

SSF47923   SSF47923        + More
SSF54511   SSF54511       
SSF57184   SSF57184       

Gene 3D

2.120.10.30    

ProteinModelPortal

H9JLP7   A0A2W1BL30   A0A2H1W6T5   A0A1E1WCN4   A0A1E1W2B7   A0A194PHQ3   + More
A0A212FIC0   A0A1Y1KQT1   A0A2J7RC25   A0A151WQT4   E9IQK4   A0A151J196   A0A158NYX6   A0A195BVF4   A0A195FT32   A0A154PAU5   D2A2J8   A0A1W4X1R8   A0A026WDF5   A0A3L8DWS5   A0A067RD98   A0A2J7RC26   A0A088AMZ8   A0A2A3EE34   V5GV59   A0A0L7RDW4   A0A1W4WS45   A0A195D0S0   A0A1B6CAJ1   A0A0M8ZYD8   A0A1B6G5P0   A0A1B6E0S5   A0A1B6MVH7   A0A1B6L3E5   K7J9T2   A0A232EVQ4   A0A2J7RC34   A0A0J7P142   F4W5H6   E2C0H0   A0A1B6GMV3   A0A224X940   A0A069DVG0   A0A0P4VKX6   A0A0V0G4Y8   A0A023F1U4   T1HPL0   A0A1B0DJW6   A0A1L8DLW6   A0A210Q8D9   A0A034WN52   A0A1S3JNQ6   K1PL63   A0A1A9VDR9   A0A0K8TWX7   A0A1S3JPC1   A0A2C9LSD6   A0A2C9LS66   U5EQB4   A0A093EZ24   A0A0B6ZN35   A0A0P7WNE8   A0A1W5B703   A0A1W5B0V3   U3I4M7   A0A3S1I1Y8   A0A093CJD4   G1NE50   A0A091HK56   A0A1J1I6J6   A0A1W5B5V9   A0A093R021   G1NE62   K7FZI2   A0A3Q3BTR5   A0A2S2Q6R3   A0A0K8TNT5   A0A3B4FB82   W5K8E1   F1NBY5   A0A091QMM2   V3ZY25   A0A099ZQS3   A0A2I0UP05   A0A093HHW2   A0A151PFQ9   A0A091MND6   A0A091U4M8   A0A1V4K7F8   A0A087QQ98   B4JBF1  

PDB

5TUB     E-value=1.36024e-107,     Score=998

KEGG

101746633    K20168 TBC1 domain family member 15 | (RefSeq) TBC1 domain family member 15

PATHWAY

04137    Mitophagy - animal - Bombyx mori (domestic silkworm)

GO

GO:0005623   GO:0017137   GO:0005096   GO:0006886   GO:0090630   GO:0032797   GO:0000387   GO:0007160   GO:0016020   GO:0005509   GO:0005576   GO:0005737  

Length:

660

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.05321

Exp number, first 60 AAs:

0.00023

Total prob of N-in:

0.00040

outside

1  -  660

 

 

Pi

166.238238

Theta

135.747217

Tajima's D

0.351294

CLR

0.00829

CSRT

0.472626368681566

Interpretation

Uncertain