Gene

KWMTBOMO07041

Pre Gene Modal

BGIBMGA010454

Annotation

integrin_alpha-PS3-like_precursor_[Bombyx_mori]

Location

Bomo_Chr12(-):2331041-2347979      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 1.233

CDS

ATGTATAGATCAATTATCTATTTAAGCGTTTTACTGTGTTGTGAATTTGTATCCGGTATTGACGTATTCCACGAGGGATCAAAAATAACGTTTCACCCCAACGATGGAGGGTCAGGTTATTTTGGTTACAGCGTCTCTCTGAGCTCCTACGGTCTCGTAGTTGGTGCGCCAAAAGCTGTGGCCAAAATGCCCTCCTCCGTTTCATCAGGTTTGGTCTACAACTGTCCTCTAAAGGACACGATGGATGCTAGCAACGTTACTTGCAATGTAATTAGTCTGGGCAGCTCGCGATATCTGGGTTACGTGTCGTTTTTAGACGAAATGATCAAGGATGACATGTGGTTCGGTGCAACCATAGCCCCCATGTCGAAGAACAAACTATTGATCTGCGCTCCTCGTTGGCTGGTCACGTACAAACGCAAGCATTACTTGGCGAACGGAGTGTGTTTTTTACACAAAAACGAACGAGACTGGATATTGTATCCATTGAGGGACATGGATCGCCAGGCTTTCGTGGTAAACGGTGACAGGATTGAATACGGGGAATACGGTCTCCATGTCAACTTCTACGCTTACGGTCAAGCGGGAATGTCGACCAAAGTGACCGAAGACAATTACGTGATCGTGGGAGCCCCTGGACTACTGCAATGGACAGGCGGTATCGTGAGTTTCAAATACAGCCAGGACGAGGAGAGCTCGTATATCAGCAAACAGACAACTTCGAATCCTTACTACACCCGGGATCTTGAACCTTATAGCTATTTCGGTTACAGTGTAGAGTCTGGGATATTCGAACCAAACGGGAGCGTATTGTATGTAAGCGGAGGTCCGCGTGCACATATGGGCTATGGAGAGGTTTTAGTCTTCAAACCAGTTCAAAGAGAGAAGGATCCCTTGAATATCTTGGCGAAATTGGTAGGACCGCATCTCGGAGCTTATTTTGGAGCTAGTCTTTGCTGTACAGACATTGATGGTGACGGCCGATCAGATCTGCTGGTTGGAGCACCAACGTATGTGAAGAAAGACGGTGGACTGCCTTTTGATCAAGGCGCCGTATTCGTTTACATGACTCGAGAGAAAGATTCGAGCTTTGTTTTAGAAGAAGCGGGTATGGTCCTCGGCTCTGGTGAGAGCGGAGCTCATTTTGGGATAGCTATTGCTGATTTGGGTGATATTGATGGGGATGGCTATAAAGATATTGCCATAGGCGCACCCTGGGAGGATGAAGGAACTGGCGCTGTCTACATTTACAAAGGACATAAGAAAGGTTTAAGAAGTAATCACATTCAGAGGATATCGCCAGAAGGCGCAAGAAGCTTTGGAATGTCAATATCTAAAGGATACGACGTGGATAACAATAACTGTAGTGATCTAGCCGTGGGTGCTCATGAAAGTGCTGAAGTTTACCTCTTCAGATGCATTCCATCCATGGACGTTCACGCTCAGATCGAAGTTCCAGATGCCATCAATTTACCACAGAACACAACCGAATTCACAGCGCTTGCCTGTATTGAGATACCCGATAAGCCTTTGTGGCGACACGTTAAATTATATATAAAATCACGAATAATCGTTGACCCGGAACAAAACAGAGCGCAGGTATCGGGCGATTCGGAAACTATTGTAGTGGCGAGGCCCGGAGACAAACAATGCACTGAACGGACTATTGCGGTTAAAGTAAGTTACAGTATTGTTACACTCGATCCAGTATTCAGTGTGCTTAGTACGAGTTTTTAA

Protein

MYRSIIYLSVLLCCEFVSGIDVFHEGSKITFHPNDGGSGYFGYSVSLSSYGLVVGAPKAVAKMPSSVSSGLVYNCPLKDTMDASNVTCNVISLGSSRYLGYVSFLDEMIKDDMWFGATIAPMSKNKLLICAPRWLVTYKRKHYLANGVCFLHKNERDWILYPLRDMDRQAFVVNGDRIEYGEYGLHVNFYAYGQAGMSTKVTEDNYVIVGAPGLLQWTGGIVSFKYSQDEESSYISKQTTSNPYYTRDLEPYSYFGYSVESGIFEPNGSVLYVSGGPRAHMGYGEVLVFKPVQREKDPLNILAKLVGPHLGAYFGASLCCTDIDGDGRSDLLVGAPTYVKKDGGLPFDQGAVFVYMTREKDSSFVLEEAGMVLGSGESGAHFGIAIADLGDIDGDGYKDIAIGAPWEDEGTGAVYIYKGHKKGLRSNHIQRISPEGARSFGMSISKGYDVDNNNCSDLAVGAHESAEVYLFRCIPSMDVHAQIEVPDAINLPQNTTEFTALACIEIPDKPLWRHVKLYIKSRIIVDPEQNRAQVSGDSETIVVARPGDKQCTERTIAVKVSYSIVTLDPVFSVLSTSF

Subunit

Heterodimer of an alpha and a beta subunit.

Similarity

Belongs to the integrin alpha chain family.

Uniprot

A0A076JQH6   H9JLQ2   Q1G0S5   A0A2A4JPM1   A0A194QPI3   A0A194PIS8   + More
A0A212F4X5   A0A2W1B894   A0A2H1VUW8   Q86G86   A0A3S2NWJ7   A0A2H1V8F5   A0A0L7LUC9   A0A2J7QMA1   A0A3R7SKY0   A0A0A0PGH3   A0A087UCA8   A0A2Z5WPE6   A0A147BHT3   A0A034VIP4   A0A0K8V796   A0A0K8VM67   A0A0K8VIA7   A0A0A1XJR9   A0A0A1X2M1   Q16R90   Q16JC5   W8BH52   W8AK36   A0A182HAI7   A0A1I8N608   A0A293N3R2   A0A1Y1LAY1   A0A1W4WBX2   A0A3Q4N2Y5   A0A1Z5LDZ0   A0A3Q2VM08   F6R3Z0   A0A3B4YNS0   A0A0P4VVE3   A0A3B4U9I1   A0A1Y1LCJ3   A0A182Y859   A0A1A9VE28   A0A3Q3FQK3   A0A1Y1L8R1   I3JIG3   Q8BQ25   A0A3B4FXJ4   A0A195E483   A0A1A9WWH1   A0A151X2M7   A0A1B0FDC0   A0A1B0A219   A0A1W4XY44   A0A3B4YHB7   A0A1W4Y7P2   A0A3Q3IQ87   A0A195FIX9   Q3U0V9   T2HRB1   A0A3Q1HR28   Q3U1F2   A0A0R4IWQ3   Q8N6H6   Q792F9   A0A2J8NQC4   A0A1W4W0F9   E9PDS3   A0A3Q3Q209   A0A1A9XFD6   A0A1B0BAL8   A0A0F8B184   A0A2K5PV54   A0A1I8NPW8   A0A0N8AHQ2   A0A3P9NB79   F4W6F4   A0A3Q3SNW5   G1TR44   A0A151IQS9   A0A2K6LJ44   Q6NV53   A0A3B0J7L9   M3VY81   A0A3B0JT85   F6UVL3   A0A2K6PQH5   A0A091E739   F6TLC2   B4GBW0   A0A096M0L4   A0A0R4ICS1   A0A0P5BAH1  

Pubmed

25064490    19121390    17868866    26354079    22118469    28756777    + More
12974949    26227816    24982879    29652888    25348373    25830018    17510324    24495485    26483478    25315136    28004739    25186727    28528879    17495919    25244985    10349636    11042159    11076861    11217851    12466851    16141073    23594743    15489334    7772255    8756341    12040188    19144319    19468303    21183079    16641997    25835551    21719571    21993624    17975172    19892987    25362486    17994087   

EMBL

KJ511850    AII79409.1    BABH01005253    BABH01005254    BABH01005255    BABH01005256    + More
BABH01005257    DQ531846    ABF59520.1    NWSH01000832    PCG73951.1    KQ461194    KPJ06885.1    KQ459603    KPI92953.1    AGBW02010302    OWR48769.1    KZ150367    PZC71171.1    ODYU01004594    SOQ44635.1    AY237587    AAO85805.1    RSAL01000043    RVE50694.1    ODYU01001218    SOQ37130.1    JTDY01000080    KOB78989.1    NEVH01013215    PNF29696.1    QCYY01003118    ROT65225.1    KC715736    AHH32887.1    KK119179    KFM74997.1    LC114983    BBC20717.1    GEGO01005083    JAR90321.1    GAKP01017524    JAC41428.1    GDHF01017527    JAI34787.1    GDHF01012345    JAI39969.1    GDHF01026317    GDHF01014059    JAI25997.1    JAI38255.1    GBXI01014337    GBXI01003157    JAC99954.1    JAD11135.1    GBXI01009292    JAD05000.1    CH477721    EAT36913.1    CH478017    EAT34371.1    GAMC01017582    GAMC01017581    JAB88974.1    GAMC01017580    JAB88975.1    JXUM01005310    KQ560190    KXJ83915.1    GFWV01023037    MAA47764.1    GEZM01066073    JAV68207.1    GFJQ02001344    JAW05626.1    GDRN01105887    JAI57655.1    GEZM01062083    JAV70050.1    GEZM01062082    JAV70052.1    AERX01026760    AERX01026761    AK051676    BAC34715.1    KQ979657    KYN19896.1    KQ982580    KYQ54454.1    CCAG010020817    KQ981523    KYN40358.1    AK156517    BAE33742.1    AB850880    BAN82540.1    AK156015    BAE33546.1    CABZ01009769    FP102798    FP102862    BC030198    AAH30198.1    AL844590    AH003666    U34627    U34628    U34629    U34631    U34632    U34633    U34634    U34635    U34763    U34764    U34765    U34766    U34767    U34768    U34769    U34770    U34797    U34798    U34799    AF109136    CH466519    AAB09630.1    AAC95388.1    EDL27240.1    NBAG03000225    PNI73938.1    AC092055    AC093415    AP006240    JXJN01011053    KQ041982    KKF19882.1    GDIP01146321    JAJ77081.1    GL887707    EGI70289.1    AAGW02047530    AAGW02047531    AAGW02047532    AAGW02047533    AAGW02047534    AAGW02047535    AAGW02047536    AAGW02047537    KQ976755    KYN08585.1    BC068313    AAH68313.1    OUUW01000001    SPP75912.1    AANG04001816    SPP75911.1    KN122353    KFO30946.1    CH479181    EDW31339.1    AYCK01002109    GDIP01191525    JAJ31877.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000053268    UP000007151    UP000283053    + More
UP000037510    UP000235965    UP000283509    UP000054359    UP000008820    UP000069940    UP000249989    UP000095301    UP000192221    UP000261580    UP000264840    UP000002280    UP000261360    UP000261420    UP000076408    UP000078200    UP000261660    UP000005207    UP000261460    UP000078492    UP000091820    UP000075809    UP000092444    UP000092445    UP000192224    UP000261600    UP000078541    UP000265040    UP000000437    UP000000589    UP000005640    UP000092443    UP000092460    UP000233040    UP000095300    UP000242638    UP000007755    UP000261640    UP000001811    UP000078542    UP000233180    UP000268350    UP000011712    UP000002281    UP000233200    UP000028990    UP000008744    UP000028760   

PRIDE

H9JLQ2    Q8N6H6    E9PDS3   

Pfam

PF01839   FG-GAP        + More
PF08441   Integrin_alpha2
PF00357   Integrin_alpha

Interpro

IPR032695   Integrin_dom_sf        + More
IPR018184   Integrin_alpha_C_CS       
IPR028994   Integrin_alpha_N       
IPR000413   Integrin_alpha       
IPR013519   Int_alpha_beta-p       
IPR013517   FG-GAP       
IPR013649   Integrin_alpha-2       

SUPFAM

SSF69179   SSF69179       

Gene 3D

2.130.10.130    

ProteinModelPortal

A0A076JQH6   H9JLQ2   Q1G0S5   A0A2A4JPM1   A0A194QPI3   A0A194PIS8   + More
A0A212F4X5   A0A2W1B894   A0A2H1VUW8   Q86G86   A0A3S2NWJ7   A0A2H1V8F5   A0A0L7LUC9   A0A2J7QMA1   A0A3R7SKY0   A0A0A0PGH3   A0A087UCA8   A0A2Z5WPE6   A0A147BHT3   A0A034VIP4   A0A0K8V796   A0A0K8VM67   A0A0K8VIA7   A0A0A1XJR9   A0A0A1X2M1   Q16R90   Q16JC5   W8BH52   W8AK36   A0A182HAI7   A0A1I8N608   A0A293N3R2   A0A1Y1LAY1   A0A1W4WBX2   A0A3Q4N2Y5   A0A1Z5LDZ0   A0A3Q2VM08   F6R3Z0   A0A3B4YNS0   A0A0P4VVE3   A0A3B4U9I1   A0A1Y1LCJ3   A0A182Y859   A0A1A9VE28   A0A3Q3FQK3   A0A1Y1L8R1   I3JIG3   Q8BQ25   A0A3B4FXJ4   A0A195E483   A0A1A9WWH1   A0A151X2M7   A0A1B0FDC0   A0A1B0A219   A0A1W4XY44   A0A3B4YHB7   A0A1W4Y7P2   A0A3Q3IQ87   A0A195FIX9   Q3U0V9   T2HRB1   A0A3Q1HR28   Q3U1F2   A0A0R4IWQ3   Q8N6H6   Q792F9   A0A2J8NQC4   A0A1W4W0F9   E9PDS3   A0A3Q3Q209   A0A1A9XFD6   A0A1B0BAL8   A0A0F8B184   A0A2K5PV54   A0A1I8NPW8   A0A0N8AHQ2   A0A3P9NB79   F4W6F4   A0A3Q3SNW5   G1TR44   A0A151IQS9   A0A2K6LJ44   Q6NV53   A0A3B0J7L9   M3VY81   A0A3B0JT85   F6UVL3   A0A2K6PQH5   A0A091E739   F6TLC2   B4GBW0   A0A096M0L4   A0A0R4ICS1   A0A0P5BAH1  

PDB

4IRZ     E-value=8.23729e-42,     Score=430

KEGG

101746113    no KO assigned | (RefSeq) integrin alpha-PS3-like

GO

GO:0008305   GO:0007229   GO:0007155   GO:0016021   GO:0016020   GO:0019960   GO:1904646   GO:0050839   GO:0043113   GO:2000353   GO:0035987   GO:0009986   GO:0050901   GO:1905564   GO:0034446   GO:0140039   GO:0003366   GO:0034113   GO:0090074   GO:0034669   GO:0033631   GO:1903238   GO:2000406   GO:0070062   GO:0060385   GO:1990771   GO:0030426   GO:0071345   GO:1990138   GO:0050904   GO:1990405   GO:0043025   GO:0001968   GO:0009925   GO:0030593   GO:0004965   GO:0030286   GO:0005515   GO:0004319   GO:0004320   GO:0016295   GO:0016296  

Subcellular location

Membrane  

SignalP

Position:   1 - 19,         Likelihood:  0.995706

 

 

Length:

578

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

4.48436

Exp number, first 60 AAs:

4.21762

Total prob of N-in:

0.18292

outside

1  -  578

 

 

Pi

193.087042

Theta

160.852615

Tajima's D

0.375593

CLR

0.012905

CSRT

0.471126443677816

Interpretation

Uncertain