Silkworm Genome Informatics Database

Gene

KWMTBOMO07039

Pre Gene Modal

BGIBMGA010454

Annotation

integrin_alpha-PS3-like_precursor_[Bombyx_mori]

Location

Bomo_Chr12(-):2317726-2325699 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 2.218 Nuclear Reliability : 1.721

CDS

ATGCAACCTACTGCCGATCTCTCAACACCGATATCCCTGAAACACGAATTAGTTCTAGAAGAACGCCTGAAGAAAGACTCAAGAGAATTTTTATATGATGCTGCGAGATTATCTGAAGAGTCAACTCTACGCGCCACATTCTTATTGCAAATATTAAGGGACTGTGGTAACGATCTCATCTGCTTACCATGGCTGAAGATGACTCTGGAACCGCTGACAAGTCCATATGTTCCAGGTACAGACGACAAATTAGGATTTAAATTGAAGATATTGAATACCGAAGAACCGGCTTACGGTGCTAAAGTCAACATTACTCTTCCGTCTGCCCCTAAGAGAGTTCCAAGCGAATGTTCTTTAGAAGATTTAATCATGAACTGTGATGTGCCAGCCCCTTTATTGAGGAACGAAGAAATAGTTTGGGAGGTTGAACTGGAATACACTGAGGAAGCTGATAAGTTTATTGTTGAAGCTGAATTGGCAGATTTATTGTATAGGACCATTACTGATGATGCAAGCAAAGAATTGACAATCGATGTAAATCCTGTGGCTAATTTCAGTATTAGTGGTAATCAATTACCAAATATTACCATTCATGTCTCGAGAGATAAGCTGAATGACGGCGAGATGATATTATTTACGCATTTTTATAAGATCACGAACTACGGGCCCTCAAATTGGCATGTTTTGGATGCTGACATCATCATACCAGAAAAGATTGAGCTGATTGATTCGCTGAAGGGCTGCCACAGCATCAAATCACACGTGGAATGCGGATGGTCCGTACCAGCTATGGTATCCATGCCGGTGATTCTGAATTTACGGTTCAACTTGTCTAAGCACGGAGATTTTCTACAATCCAACAATAATTTCAACGTCACCACTGCAATCGTGCTGCGCTTGAAGGATCTAAATAAATCATTCGAAATCACAACCACGTTGATTCTGGAGCCGGTTCCACCGATCTGGCCACAAATAGTTGGCTCGGTGGTCGGCTTCATTGTTCTTGCTGCAATTGTGTTCGGATTATACAAAGCTGGTTTCTTCTCGAGGAAACAAAGGGATCAACTGAAACTGCTTCAAGACGAAACACAAAGTGGCCAAGAGACGCTTGAACATGTCAATGACGAGATCAAACAATCAACATCAGATTTACTGGAAGACACATAA

Protein

MQPTADLSTPISLKHELVLEERLKKDSREFLYDAARLSEESTLRATFLLQILRDCGNDLICLPWLKMTLEPLTSPYVPGTDDKLGFKLKILNTEEPAYGAKVNITLPSAPKRVPSECSLEDLIMNCDVPAPLLRNEEIVWEVELEYTEEADKFIVEAELADLLYRTITDDASKELTIDVNPVANFSISGNQLPNITIHVSRDKLNDGEMILFTHFYKITNYGPSNWHVLDADIIIPEKIELIDSLKGCHSIKSHVECGWSVPAMVSMPVILNLRFNLSKHGDFLQSNNNFNVTTAIVLRLKDLNKSFEITTTLILEPVPPIWPQIVGSVVGFIVLAAIVFGLYKAGFFSRKQRDQLKLLQDETQSGQETLEHVNDEIKQSTSDLLEDT

Subunit

Heterodimer of an alpha and a beta subunit.

Similarity

Belongs to the integrin alpha chain family.

Uniprot

A0A076JQH6 Q1G0S5 A0A194QPI3 A0A212F4X5 A0A2A4JPM1 A0A2H1V8F5 + More
A0A194PIS8 Q86G86 A0A3S2NWJ7 A0A3S2P8H4 A0A2J7QMB1 T1F029 A0A212EXX6 A0A194RNQ6 E9GMZ7 A0A336LTI8 A0A2P6KP11

Pubmed

25064490 17868866 26354079 22118469 12974949 23254933 + More
21292972

EMBL

KJ511850 AII79409.1 DQ531846 ABF59520.1 KQ461194 KPJ06885.1 + More
AGBW02010302 OWR48769.1 NWSH01000832 PCG73951.1 ODYU01001218 SOQ37130.1 KQ459603 KPI92953.1 AY237587 AAO85805.1 RSAL01000043 RVE50694.1 RSAL01000201 RVE44446.1 NEVH01013215 PNF29707.1 AMQM01002886 KB095905 ESO10161.1 AGBW02011645 OWR46348.1 KQ459984 KPJ19044.1 GL732553 EFX79204.1 UFQT01000100 SSX19939.1 MWRG01007780 PRD28069.1

Proteomes

UP000053240 UP000007151 UP000218220 UP000053268 UP000283053 UP000235965 + More
UP000015101 UP000000305

Pfam

PF01839 FG-GAP + More
PF08441 Integrin_alpha2

Interpro

IPR032695   Integrin_dom_sf        + More
IPR018184   Integrin_alpha_C_CS
IPR028994   Integrin_alpha_N
IPR000413   Integrin_alpha
IPR013519   Int_alpha_beta-p
IPR013517   FG-GAP
IPR013649   Integrin_alpha-2

SUPFAM

SSF69179 SSF69179

Gene 3D

2.130.10.130

ProteinModelPortal

A0A076JQH6 Q1G0S5 A0A194QPI3 A0A212F4X5 A0A2A4JPM1 A0A2H1V8F5 + More
A0A194PIS8 Q86G86 A0A3S2NWJ7 A0A3S2P8H4 A0A2J7QMB1 T1F029 A0A212EXX6 A0A194RNQ6 E9GMZ7 A0A336LTI8 A0A2P6KP11

PDB

4CAK E-value=9.35893e-06, Score=117

KEGG

101746113 no KO assigned | (RefSeq) integrin alpha-PS3-like

GO

GO:0008305 GO:0007229 GO:0007155 GO:0016021 GO:0004965 GO:0030286 GO:0005515 GO:0004319 GO:0004320 GO:0016295 GO:0016296

Subcellular location

Membrane

Length:

388

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

22.92397

Exp number, first 60 AAs:

2e-05

Total prob of N-in:

0.00681

outside

1 - 320

TMhelix

321 - 343

inside

344 - 388

Pi

192.133014

Theta

154.904417

Tajima's D

1.217841

CLR

0.31483

CSRT

0.72016399180041

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics