Gene

KWMTBOMO07035

Annotation

PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Plutella_xylostella]

Location

Bomo_Chr12(-):2272691-2274299      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.939

CDS

ATGCTGGAGCGGCAGTTCGCTCCAAATAACTCTGCACCCTCAGAGGCCGCATTCCACCAATCGGTGGAAGAGAGCGTAGCAAGCCTACTCTCCTCCCCGGTGCCACCGTTGGGAGACGGTGATTTCATCACTCCCAGTGAATTGCGCCTCTCCATCAAGCGGATGAAGAGGCGCAAGGCGCCGGGCGAGGACGGTATTCCCTCCCTCGCATTTTTCCACTTCCCCGAAACGGTCGTGTCATTCATGACACGAATGTTCAATTCCATTCTGTCCACAGGACACTTCCCGGGAATTTGGAAATTGGGCAAGGTTATTGCCCTGCCCAAACCCGGCAAGGATAGGAGAAATCCCTCCAGCTATCGTCCGATCACTCTGCTGTCGCATATGGGCAAGTTGTTCGAGCGGCTGCTGCTGAGAAGGGTGTCGCCGCACATCCTTCTCAGACCCGAGCAATTCGGGTTTCGCAGCGGTCACTCGACAACGCTGCAATTGGTCCGCGTTATGCACCACTTGGCGGATCGGTCCAACGCGCGCCAGTACACGGCCGCAGTCTTTCTCGATATCGAGAAGGCCTTCGACCGTGTCTGGCATGCGGGACTGATCTACAAGCTGTTGCAGAACACGGACCTCCAGCACGCCTATGTGCGACTGCTGGGGTCGTACCTGGAGGGAAGATCCTTCCTTGTCGCGGTCGAGGGCGCAAAGTCGTCGGTGCGCCCAGTCACGGCCGGAGTTCCCCAGGGAAGCGTCCTGGCACCAGTCCTCTACGCTCTCTACACCAACGACATTCCCACGCTTGAGGGCAACCTCCAAGCGTGGGAAGCCGACGTGAAGTTGGCGCTGTTTGCCGACGACAGCGCCTACTTCTCGTCCTCTAATTTCCCCTCTGCGGCCATTTCGAGGATGCAGAGGCTGTTGGACCTACTGCCCCAGTGGCTGGACCGATGGAGGGTCGCGGTCAACGTGGGGAAGACCGCGGCTATCCTCTTCGGTCCGGTCCGCACAAGAGCCGTCCCAGGACAGCTCAGTCTCCGTGGAGTCAATGTCGAGTTTAGGCCCAGTGTCCGATACCTGGGAGTCAATATCGACCGGAGTTTGAGGATGACCGCCCACGCCAAGTCGGCGTTGGCGGCCGCCCGCTATGCGAGGTTTCTCCTCCGGCCGGTGTTGGCCTCCAGGTTGCCGACCAGGACTAGACTCGGCATTTACAAGACGTATGTCCGTTCCCGTATCACGTACGCAGCTGCAGCCTGGTATCACCTCATCCCGCAGATCATGCGGGTGAAGTTACAGGCCCAGCAGAATCTGGCTCTTCGCACGATAGTCGGAGCAGGGCGTTACGTCAGAAATGACGTAATCGCCCGGGATCTAGATGTGGAGTCGCTCGAGGAGTTCATTCGGAGGCTAGCTCGTAATATGTACGAGCGGGCTGACGGTGGACCCCACGAGCATCTCCACAATATAGCTCCCTTGCACGCCAGACCACCTGATGGTCAGGCGCTACCAAGGGAGCTACTGGAACCCCCGGCTATGGTAAGATAG

Protein

MLERQFAPNNSAPSEAAFHQSVEESVASLLSSPVPPLGDGDFITPSELRLSIKRMKRRKAPGEDGIPSLAFFHFPETVVSFMTRMFNSILSTGHFPGIWKLGKVIALPKPGKDRRNPSSYRPITLLSHMGKLFERLLLRRVSPHILLRPEQFGFRSGHSTTLQLVRVMHHLADRSNARQYTAAVFLDIEKAFDRVWHAGLIYKLLQNTDLQHAYVRLLGSYLEGRSFLVAVEGAKSSVRPVTAGVPQGSVLAPVLYALYTNDIPTLEGNLQAWEADVKLALFADDSAYFSSSNFPSAAISRMQRLLDLLPQWLDRWRVAVNVGKTAAILFGPVRTRAVPGQLSLRGVNVEFRPSVRYLGVNIDRSLRMTAHAKSALAAARYARFLLRPVLASRLPTRTRLGIYKTYVRSRITYAAAAWYHLIPQIMRVKLQAQQNLALRTIVGAGRYVRNDVIARDLDVESLEEFIRRLARNMYERADGGPHEHLHNIAPLHARPPDGQALPRELLEPPAMVR

Uniprot

A0A3S2NJ07   A0A2A4JQF8   A0A2S2RAN7   J9LF86   X1XGU0   J9L876   + More
J9KPF1   A0A1Y1KUU7   A0A087U2S8   X1WN18   A0A2S2NJB5   J9LFC9   X1WZH0   A0A2J7QEZ4   J9KCZ4   X1WLB2   A0A2J7Q5G9   X1WNI2   J9LC21   A0A2J7PMP9   A0A2J7RB54   A0A2J7PMP6   A0A2J7Q4F7   A0A2J7RS77   A0A2S2PR14   A0A2J7R4B7   A0A2J7RIW7   A0A2J7RM10   A0A2J7Q059   X1WMU5   A0A2J7QUJ9   A0A2J7RPU2   A0A1Y1NA23   A0A2J7QFL0   A0A2S2Q823   A0A2J7Q0Q6   J9KKL3   V5GNJ2   A0A2J7R6U1   A0A2J7R2E1   J9KEU4   A0A2J7RKP3   A0A2J7Q6J2   A0A2J7Q1Y9   A0A2J7PU96   X1WWC4   V5GNF3   J9JUG3   X1X928   J9JS95   A0A2J7PBY3   A0A2J7QY69   A0A2J7QR37   A0A2J7PDS9   X1WQR0   A0A2S2QTZ8   A0A2A4K8E7   X1WXU3   A0A0N0PA09   A0A2J7Q2R1   J9LF85   Q9XXW0   A0A0N1PFV1   A0A087T1W0   A0A182GA28   A0A2A4K918   A0A224XF24   Q9BPQ0   A0A2S2PX53   A0A139WA11   A0A2L2YNL2   A0A1Y1LKN6   A0A023EZE6   A0A2S2QJM7   A0A2J7RS81   A0A0A9Y7Q6   A0A2H8TV33   A0A087TMJ9   A0A139W8G9   A0A146LCK7   A0A2J7RL12   A0A2J7Q627   A0A023EYS8   A0A1Y1JXT3   A0A2J7R4B1   A0A2J7PQB5   A0A2J7QPI2   A0A182GMD9   A0A2J7R579   A0A087SWJ5   A0A087UCW3   A0A0A9YGU9   A0A0A9YJ00   A0A2J7PEB1   A0A2J7R8R8   Q93137   A0A224X6Q4   A0A0A9YU04   O96546   A0A087U3E2  

Pubmed

28004739    26354079    10333566    26483478    18362917    19820115    + More
26561354    25474469    25401762    26823975    10380107   

EMBL

RSAL01000708    RVE41206.1    NWSH01000895    PCG73652.1    GGMS01017914    MBY87117.1    + More
ABLF02017815    ABLF02055645    ABLF02033522    ABLF02041767    GEZM01074951    JAV64378.1    KK117880    KFM71667.1    ABLF02021177    ABLF02027367    ABLF02066338    GGMR01004661    MBY17280.1    ABLF02023911    ABLF02034467    NEVH01015305    NEVH01006671    PNF27154.1    PNF37357.1    ABLF02008463    ABLF02042518    ABLF02057746    NEVH01017559    PNF23833.1    ABLF02008153    ABLF02008462    ABLF02008464    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    NEVH01023961    PNF17613.1    NEVH01005938    PNF38077.1    NEVH01023962    PNF17612.1    NEVH01018383    PNF23463.1    NEVH01000280    PNF43672.1    GGMR01019198    MBY31817.1    NEVH01007443    PNF35684.1    NEVH01003017    PNF40781.1    NEVH01021586    NEVH01006600    NEVH01002584    PNF19589.1    PNF37419.1    PNF41868.1    NEVH01020071    PNF21969.1    ABLF02014862    ABLF02014866    ABLF02061908    NEVH01010546    PNF32261.1    NEVH01001355    PNF42855.1    GEZM01008457    JAV94772.1    NEVH01014858    PNF27387.1    GGMS01004685    MBY73888.1    NEVH01019964    PNF22161.1    ABLF02029306    ABLF02029314    ABLF02060138    GALX01005299    JAB63167.1    NEVH01006754    PNF36554.1    NEVH01007838    PNF34986.1    ABLF02040650    ABLF02040651    ABLF02056776    NEVH01002716    PNF41415.1    NEVH01017470    PNF24199.1    NEVH01019376    PNF22596.1    NEVH01021205    PNF19912.1    ABLF02003961    ABLF02059872    GALX01005359    JAB63107.1    ABLF02008677    ABLF02011967    ABLF02052409    ABLF02056408    ABLF02066620    ABLF02028535    ABLF02028545    NEVH01027074    PNF13841.1    NEVH01009134    PNF33528.1    NEVH01011985    PNF31054.1    NEVH01026154    PNF14491.1    ABLF02050434    ABLF02064867    GGMS01012005    MBY81208.1    NWSH01000032    PCG80497.1    ABLF02008933    KQ459259    KPJ02068.1    NEVH01019080    PNF22876.1    ABLF02017813    AB018558    BAA76304.1    KQ459265    KPJ02064.1    KK113014    KFM59099.1    JXUM01155316    KQ572171    KXJ68070.1    PCG80496.1    GFTR01008038    JAW08388.1    AB055391    BAB21761.1    GGMS01000737    MBY69940.1    KQ971729    KYB24751.1    IAAA01035747    LAA09607.1    GEZM01053022    JAV74219.1    GBBI01004571    JAC14141.1    GGMS01008766    MBY77969.1    NEVH01000269    PNF43694.1    GBHO01016496    JAG27108.1    GFXV01005866    MBW17671.1    KK115908    KFM66338.1    KQ973342    KXZ75569.1    GDHC01014349    JAQ04280.1    NEVH01002704    PNF41489.1    NEVH01017542    PNF24034.1    GBBI01004395    JAC14317.1    GEZM01101509    JAV52620.1    NEVH01007578    PNF35646.1    NEVH01022639    PNF18527.1    NEVH01012089    PNF30491.1    JXUM01014072    KQ560393    KXJ82651.1    NEVH01007393    PNF35987.1    KK112269    KFM57234.1    KK119261    KFM75202.1    GBHO01013276    JAG30328.1    GBHO01010547    GBHO01010546    JAG33057.1    JAG33058.1    NEVH01026106    PNF14658.1    NEVH01006721    PNF37225.1    U07847    AAA17752.1    GFTR01008279    JAW08147.1    GBHO01021814    GBHO01010549    JAG21790.1    JAG33055.1    AF081103    AAC72921.1    KK117974    KFM71881.1   

Proteomes

UP000283053    UP000218220    UP000007819    UP000054359    UP000235965    UP000053268    + More
UP000069940    UP000249989    UP000007266   

PRIDE

Q9XXW0    Q9BPQ0    Q93137   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF07530   PRE_C2HC
PF10551   MULE
PF03372   Exo_endo_phos
PF03184   DDE_1
PF07727   RVT_2

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR006579   Pre_C2HC_dom       
IPR018289   MULE_transposase_dom       
IPR036875   Znf_CCHC_sf       
IPR004875   DDE_SF_endonuclease_dom       
IPR013103   RVT_2       

SUPFAM

SSF56219   SSF56219        + More
SSF57756   SSF57756       

Gene 3D

3.60.10.10    

ProteinModelPortal

A0A3S2NJ07   A0A2A4JQF8   A0A2S2RAN7   J9LF86   X1XGU0   J9L876   + More
J9KPF1   A0A1Y1KUU7   A0A087U2S8   X1WN18   A0A2S2NJB5   J9LFC9   X1WZH0   A0A2J7QEZ4   J9KCZ4   X1WLB2   A0A2J7Q5G9   X1WNI2   J9LC21   A0A2J7PMP9   A0A2J7RB54   A0A2J7PMP6   A0A2J7Q4F7   A0A2J7RS77   A0A2S2PR14   A0A2J7R4B7   A0A2J7RIW7   A0A2J7RM10   A0A2J7Q059   X1WMU5   A0A2J7QUJ9   A0A2J7RPU2   A0A1Y1NA23   A0A2J7QFL0   A0A2S2Q823   A0A2J7Q0Q6   J9KKL3   V5GNJ2   A0A2J7R6U1   A0A2J7R2E1   J9KEU4   A0A2J7RKP3   A0A2J7Q6J2   A0A2J7Q1Y9   A0A2J7PU96   X1WWC4   V5GNF3   J9JUG3   X1X928   J9JS95   A0A2J7PBY3   A0A2J7QY69   A0A2J7QR37   A0A2J7PDS9   X1WQR0   A0A2S2QTZ8   A0A2A4K8E7   X1WXU3   A0A0N0PA09   A0A2J7Q2R1   J9LF85   Q9XXW0   A0A0N1PFV1   A0A087T1W0   A0A182GA28   A0A2A4K918   A0A224XF24   Q9BPQ0   A0A2S2PX53   A0A139WA11   A0A2L2YNL2   A0A1Y1LKN6   A0A023EZE6   A0A2S2QJM7   A0A2J7RS81   A0A0A9Y7Q6   A0A2H8TV33   A0A087TMJ9   A0A139W8G9   A0A146LCK7   A0A2J7RL12   A0A2J7Q627   A0A023EYS8   A0A1Y1JXT3   A0A2J7R4B1   A0A2J7PQB5   A0A2J7QPI2   A0A182GMD9   A0A2J7R579   A0A087SWJ5   A0A087UCW3   A0A0A9YGU9   A0A0A9YJ00   A0A2J7PEB1   A0A2J7R8R8   Q93137   A0A224X6Q4   A0A0A9YU04   O96546   A0A087U3E2  

PDB

6AR3     E-value=0.000335652,     Score=105

KEGG

105842439    no KO assigned | (RefSeq) uncharacterized LOC105842439

GO

GO:0003964   GO:0008270   GO:0003676   GO:0004519  

Length:

513

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.16169

Exp number, first 60 AAs:

0.00027

Total prob of N-in:

0.00803

outside

1  -  513

 

 

Pi

178.700549

Theta

160.434538

Tajima's D

0.137005

CLR

147.301988

CSRT

0.407879606019699

Interpretation

Uncertain