Gene

KWMTBOMO07028

Pre Gene Modal

BGIBMGA010510

Annotation

PREDICTED:_probable_ATP-dependent_RNA_helicase_DDX28_[Plutella_xylostella]

Location

Bomo_Chr12(+):2048310-2053038      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.112 Nuclear   Reliability : 1.691

CDS

ATGTCTAAATTACGTCAATTAATTAGCACATCTTATAGTCGTTATTATAGCCTCCAGCAGGCTAAGAAAAAATTACCTATTATAACATGCAAGCGACCGGAATTCAATCACTACGAAGGACAGAGTTATAGCAAGTATGAAGGTATAAAACTAGCTTCGCAGGGGTGGCTACACAATAAATCAAAGGGAGACTATTTCATCATACACGGGAATGCAAATAAAAAAGAAGAAACACCCGTGTATAGGAAGACTTTTGAAGATATCGGCTTGAAAGATAATTTGGTTAAAGTTGTCAAAGATTTAGGGTTTACGCTGCCCACGGCCATACAAACAAAGGCTGTACCCGCCATTCTCAATGGACACAATACGGTAATCACAGCGGAGACGGGCTGCGGGAAGACCTTAGCGTATTTGTTACCTATAATTCAACATATACTGGAATGGAAGCCAAGTATTCAAGAAGAATTTAATAGTCCATTGGCTGTTGTTATTACACCGAACAGAGAACTAGCTCTACAAATAGGAGAAGTGGCTCAAACAATAGCACAAAGCATAAACATAAATGTCACGACTTTAATAGGAGGCAAAACGAAAAAAAAAATGTTAAACCCTCCAATTGAGCACAGTGACATATTAATCACAACGCTCGGAGCTTACAGTAAACTAGTCACAACTGGAATATACAAGATTCACAATGTGCATCATATTGTGCTGGATGAAGCAGATTCCCTTTTGGATGACACATTTATTGATAAAGTCACATATCTGTTGAAGAAATTTTCGATACAATATAAAGTTGATATTCAAGTCCCTCCCACAGGTTGTCAGTTGACTTTAGTTAGTGCAACACTACCTAGGGACCTTCCGGAAACTGTCAATAGTTTTGTAGCGGCTGAATCACTGAAAATGGTTAGAACTTCAAATATACATCGGATATTACCACATGTGCCGCAGAAATTCTTACGTCTCGGGAAGGCGCACAAGCCCGCGGAACTCCTCAAACTTGTCCAAGCGGATCAGAACGAGAGGAGACCGGTCATGATCTTCAGCAATCAGACGTCTGGCTGCGACTTCGTGTCCATGTTCCTGAACGAGAACAACGTTGAATGCATCAACATCAACGGCCAGATGCCGGTACAGCTGAAGTTGGGGAAGTTTGAAATGTTCAGATCCGGGAAAGTTAATGTCATTTCGTGTACTGATATCGTTTCCCGAGGATTGGACACTACTAGGACGCACCACGTAATTAATTACGATTTCCCTCTGCACACGTCTGACTACATCCACCGGTGCGGGCGCGCGGGCCGGCTGGGCTCCCCGCCCGGATCCCACGTCACAAGCTTCGTGGCCTGGCCCCGCGAAGTCGAGCTGGTCCAGAAGATCGAGACCTCGGTCAGGACAAACTCTGACCTGCCCCACGTTAACGCCAACATCAAGCGGGTCATACGAGACAGGATTGTCAGGATGAGCGGGGCTCTTGCTAGGGCAAGTTGA

Protein

MSKLRQLISTSYSRYYSLQQAKKKLPIITCKRPEFNHYEGQSYSKYEGIKLASQGWLHNKSKGDYFIIHGNANKKEETPVYRKTFEDIGLKDNLVKVVKDLGFTLPTAIQTKAVPAILNGHNTVITAETGCGKTLAYLLPIIQHILEWKPSIQEEFNSPLAVVITPNRELALQIGEVAQTIAQSININVTTLIGGKTKKKMLNPPIEHSDILITTLGAYSKLVTTGIYKIHNVHHIVLDEADSLLDDTFIDKVTYLLKKFSIQYKVDIQVPPTGCQLTLVSATLPRDLPETVNSFVAAESLKMVRTSNIHRILPHVPQKFLRLGKAHKPAELLKLVQADQNERRPVMIFSNQTSGCDFVSMFLNENNVECININGQMPVQLKLGKFEMFRSGKVNVISCTDIVSRGLDTTRTHHVINYDFPLHTSDYIHRCGRAGRLGSPPGSHVTSFVAWPREVELVQKIETSVRTNSDLPHVNANIKRVIRDRIVRMSGALARAS

Uniprot

H9JLV8   A0A2W1BJ26   A0A2A4K814   A0A2H1V0T2   A0A3S2NY02   A0A194PJQ1   + More
A0A194QPH8   A0A212EH25   A0A0L7L6I0   S4PBL6   A0A067RK13   A0A2J7PS80   A0A1B6EFR9   A0A1B6JBV5   T1IFZ3   A0A1W4V3N9   A0A224XIG1   A0A3R7QIC6   A0A0A9Z2K7   B4Q6J6   A0A1B6M4H1   B3N885   A0A1B6KUR4   B4ID15   B3MAI3   Q9VPT3   A0A3B0K0J5   B4P2X4   A0A1Q3EYR4   A0A034WBB6   W8B0D8   B4G9K2   A0A0K8V8M1   B0XJF6   W5JE88   A0A1J1ILH0   B0X2Y7   A0A1I8Q410   Q29M92   Q17CQ0   B4N0T5   A0A182H4Z1   A0A0P6HED8   A0A0P5CH29   A0A0P5T140   A0A0P5SYF6   B4JDT1   A0A2J7PS79   E9HSC9   A0A0M4E8R6   A0A084VAK2   B4LTQ1   A0A182PT25   A0A182YHI1   A0A1I8MM25   A0A2S2NQZ6   A0A182SY94   A0A1B0GQP0   A0A2H8TMY3   A0A1L8DRL1   A0A182VWM6   A0A182LVC9   A0A1B0C8R6   J9JJJ7   A0A182Q8K6   A0A182HJ83   A0A1B0C103   A0A182LCF1   A0A182XE40   A0A182TYQ9   A0A182UPG5   B4KF80   A0A0V0GBP4   D3TPD0   A0A0L0C8U0   A0A1B0A7M7   A0A158NZ67   A0A232FG16   K7IQP8   A0A1A9YIR9   A0A0T6AUP4   A0A0P5YDA7   A0A182N510   A0A195AYK6   A0A195CW58   A0A1A9UNS1   Q7QM14   A0A2S2Q052   E9IUV1   A0A195F6U8   A0A151WQ97   A0A182FKU6   A0A026WQB9   A0A0P5EDW2   A0A182RC47   F4X348   A0A151J3Z5   A0A154PCU6   A0A226EW59   A0A0N8EDW2  

Pubmed

19121390    28756777    26354079    22118469    26227816    23622113    + More
24845553    25401762    17994087    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    25348373    24495485    20920257    23761445    15632085    17510324    26483478    21292972    24438588    25244985    25315136    20966253    20353571    26108605    21347285    28648823    20075255    9087549    12364791    14747013    17210077    21282665    24508170    21719571   

EMBL

BABH01005227    KZ150274    PZC71663.1    NWSH01000039    PCG80371.1    ODYU01000155    + More
SOQ34447.1    RSAL01000028    RVE51878.1    KQ459603    KPI92959.1    KQ461194    KPJ06880.1    AGBW02014975    OWR40789.1    JTDY01002689    KOB70916.1    GAIX01004561    JAA87999.1    KK852424    KDR24181.1    NEVH01021938    PNF19192.1    GEDC01000520    JAS36778.1    GECU01010985    JAS96721.1    ACPB03004178    GFTR01006818    JAW09608.1    QCYY01001184    ROT79860.1    GBHO01007559    JAG36045.1    CM000361    CM002910    EDX03262.1    KMY87368.1    GEBQ01009152    JAT30825.1    CH954177    EDV57272.1    GEBQ01024836    JAT15141.1    CH480829    EDW45441.1    CH902618    EDV41270.1    AE014134    AY058512    AAF51458.1    AAL13741.1    OUUW01000004    SPP79136.1    CM000157    EDW87181.1    GFDL01014603    JAV20442.1    GAKP01007517    JAC51435.1    GAMC01019879    JAB86676.1    CH479180    EDW29032.1    GDHF01017374    JAI34940.1    DS233504    EDS30287.1    ADMH02001488    ETN62371.1    CVRI01000054    CRL00412.1    DS232303    EDS39489.1    CH379060    EAL33802.2    CH477305    EAT44146.1    CH963920    EDW77698.1    JXUM01110641    KQ565430    KXJ70985.1    GDIQ01020422    JAN74315.1    GDIP01175534    JAJ47868.1    GDIP01134971    LRGB01000243    JAL68743.1    KZS20218.1    GDIP01136224    JAL67490.1    CH916368    EDW03451.1    PNF19193.1    GL732749    EFX65346.1    CP012523    ALC38451.1    ATLV01004128    KE524190    KFB34996.1    CH940649    EDW65024.1    GGMR01007001    MBY19620.1    AJVK01017752    AJVK01017753    GFXV01003476    MBW15281.1    GFDF01004978    JAV09106.1    AXCM01004774    AJWK01001311    ABLF02033919    AXCN02000180    APCN01002131    JXJN01023846    CH933807    EDW13063.1    GECL01000728    JAP05396.1    CCAG010011565    EZ423282    ADD19558.1    JRES01000753    KNC28691.1    ADTU01003923    ADTU01003924    NNAY01000250    OXU29706.1    LJIG01022779    KRT78758.1    GDIP01061448    JAM42267.1    KQ976701    KYM77318.1    KQ977220    KYN04865.1    AAAB01005643    EAA02581.4    GGMS01001858    MBY71061.1    GL766050    EFZ15649.1    KQ981768    KYN35917.1    KQ982843    KYQ50034.1    KK107151    EZA57309.1    GDIP01144280    JAJ79122.1    GL888608    EGI59148.1    KQ980228    KYN17151.1    KQ434864    KZC09088.1    LNIX01000002    OXA60856.1    GDIQ01036372    JAN58365.1   

Proteomes

UP000005204    UP000218220    UP000283053    UP000053268    UP000053240    UP000007151    + More
UP000037510    UP000027135    UP000235965    UP000015103    UP000192221    UP000283509    UP000000304    UP000008711    UP000001292    UP000007801    UP000000803    UP000268350    UP000002282    UP000008744    UP000002320    UP000000673    UP000183832    UP000095300    UP000001819    UP000008820    UP000007798    UP000069940    UP000249989    UP000076858    UP000001070    UP000000305    UP000092553    UP000030765    UP000008792    UP000075885    UP000076408    UP000095301    UP000075901    UP000092462    UP000075920    UP000075883    UP000092461    UP000007819    UP000075886    UP000075840    UP000092460    UP000075882    UP000076407    UP000075902    UP000075903    UP000009192    UP000092444    UP000037069    UP000092445    UP000005205    UP000215335    UP000002358    UP000092443    UP000075884    UP000078540    UP000078542    UP000078200    UP000007062    UP000078541    UP000075809    UP000069272    UP000053097    UP000075900    UP000007755    UP000078492    UP000076502    UP000198287   

PRIDE

H9JLV8   

Pfam

PF00270   DEAD        + More
PF00271   Helicase_C
PF16087   DUF4817
PF02759   RUN
PF12068   PH_RBD
PF00566   RabGAP-TBC

Interpro

IPR011545   DEAD/DEAH_box_helicase_dom        + More
IPR014014   RNA_helicase_DEAD_Q_motif       
IPR001650   Helicase_C       
IPR014001   Helicase_ATP-bd       
IPR027417   P-loop_NTPase       
IPR032135   DUF4817       
IPR037213   Run_dom_sf       
IPR035969   Rab-GTPase_TBC_sf       
IPR004012   Run_dom       
IPR037745   SGSM1/2       
IPR021935   SGSM1/2_RBD       
IPR000195   Rab-GTPase-TBC_dom       

SUPFAM

SSF52540   SSF52540        + More
SSF47923   SSF47923       
SSF140741   SSF140741       

CDD

cd00079  HELICc
cd15784  PH_RUTBC

ProteinModelPortal

H9JLV8   A0A2W1BJ26   A0A2A4K814   A0A2H1V0T2   A0A3S2NY02   A0A194PJQ1   + More
A0A194QPH8   A0A212EH25   A0A0L7L6I0   S4PBL6   A0A067RK13   A0A2J7PS80   A0A1B6EFR9   A0A1B6JBV5   T1IFZ3   A0A1W4V3N9   A0A224XIG1   A0A3R7QIC6   A0A0A9Z2K7   B4Q6J6   A0A1B6M4H1   B3N885   A0A1B6KUR4   B4ID15   B3MAI3   Q9VPT3   A0A3B0K0J5   B4P2X4   A0A1Q3EYR4   A0A034WBB6   W8B0D8   B4G9K2   A0A0K8V8M1   B0XJF6   W5JE88   A0A1J1ILH0   B0X2Y7   A0A1I8Q410   Q29M92   Q17CQ0   B4N0T5   A0A182H4Z1   A0A0P6HED8   A0A0P5CH29   A0A0P5T140   A0A0P5SYF6   B4JDT1   A0A2J7PS79   E9HSC9   A0A0M4E8R6   A0A084VAK2   B4LTQ1   A0A182PT25   A0A182YHI1   A0A1I8MM25   A0A2S2NQZ6   A0A182SY94   A0A1B0GQP0   A0A2H8TMY3   A0A1L8DRL1   A0A182VWM6   A0A182LVC9   A0A1B0C8R6   J9JJJ7   A0A182Q8K6   A0A182HJ83   A0A1B0C103   A0A182LCF1   A0A182XE40   A0A182TYQ9   A0A182UPG5   B4KF80   A0A0V0GBP4   D3TPD0   A0A0L0C8U0   A0A1B0A7M7   A0A158NZ67   A0A232FG16   K7IQP8   A0A1A9YIR9   A0A0T6AUP4   A0A0P5YDA7   A0A182N510   A0A195AYK6   A0A195CW58   A0A1A9UNS1   Q7QM14   A0A2S2Q052   E9IUV1   A0A195F6U8   A0A151WQ97   A0A182FKU6   A0A026WQB9   A0A0P5EDW2   A0A182RC47   F4X348   A0A151J3Z5   A0A154PCU6   A0A226EW59   A0A0N8EDW2  

PDB

5IVL     E-value=1.90481e-38,     Score=401

KEGG

101745532    K20096 ATP-dependent RNA helicase DDX28 [EC:3.6.4.13] | (RefSeq) probable ATP-dependent RNA helicase

GO

GO:0005524   GO:0003676   GO:0004386   GO:0005737   GO:0016887   GO:0005096   GO:0016491   GO:0007018   GO:0030286   GO:0005515   GO:0004319   GO:0004320   GO:0016295   GO:0016296  

Length:

497

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0083

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00344

outside

1  -  497

 

 

Pi

24.221652

Theta

21.203329

Tajima's D

-0.963877

CLR

0.958607

CSRT

0.142892855357232

Interpretation

Uncertain