SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO07026
Pre Gene Modal
BGIBMGA010509
Annotation
PREDICTED:_transcriptional_protein_SWT1_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 4.284
 

Sequence

CDS
ATGAGTTCGAGTTGCAATGAAACATCTCAACTTCCTGATGGCTGGGTACTTTGCACTTCCAAATCAAGTCCTGGAAGGAAGTACTATTTCAATAAAAGAACGGGAAAGTCTTCCTGGACGCAACCACAGTTGGACGAGAGTAAAGATAAAAGTAAAAAAGAAAAAGATAATCAAAGGGATATGAAAAGTAAAGAAGAGGAAAAGAAGAGTTTAAAGCGTAAAAATGATGGCTCTGAACAAAACTCCCCAATTCGAAAGCAGAAAGAAGCTAAATCTTCTCCAGGGAAGTGTTGGCCCAGTCTTAATGAAATATCTCTTAAAAATGTAGAAACAAAGAGACAGAGCACAAGTCAAGAGCAAACTCAAAAAGATATCCCGGGGAGAGCACAAGAATCATACAGACACAGCAGCAGCCAAAGAGAGTCAGTCTCTAGAACAGACAGCCCTGACAGACGCACCCCAGCTAAGAATTTAGCTAACACAAGACTCACACAATTAAGGGCCCAACTTTCTTCAGAAGCACAAAAAGAGGAAAATAAAGATTCTACAGTAAAAAAACGCAAAATGTCCACAGACACTGAAACTTCACGTAACAGTAGAACGGAGAAAAGTCCTAGTTCTAGTGATGTAAAGAGTTCAACACAGTCTCCCAGCAGTGAGAGCCTACCATCAATACCATCACCATCACAGTTTTTTGCAGCAAATAAGATTATTTCATCCATGAAAGCTCAGTTACCTGAAGAATATTGTGATAAAGTGAAGCAAAAGGATATGTTTGCTGATATTGAACAAGGAATATATAATCAAGTTACAGAGTATCCATATATGAAACATCCAGCTACTCCACCACAATTTTCAGAAGCCAGCAAACTGGTTTCAGCTATAAAATCTAAGTTGACATATAAAAGTTCTGGTGTTGATTGTGACTTGATTACATATTCATCGGCACAAGATCGCTTAGATGCTCTACGTACAAGGTTGAGCAATGATGCAACTAATGCAGAATATAGCATCAACATTCCGGAAAGTAAGGAAGATTTTGCCTGTAATGAAGCTATGGACGTTGATTTGAAGAGTGAGATAAAAGAGCCAAGATCAAACACCATTTCACCAGTATCAAGTTTACATGAGGATACAAGTGATCTGAAGGAGAATTTAGTATTAGTTGTCGATACTAATATATTCATACATGAGCTAGATTTCATTAAGGATGTGTTGAATTCACACGTAAAAGGTTACAGTGAGCAGCCAACTTTGTTAGTACCGTGGAGGGTGATAAATGAACTGGACAGGCTAAAAGACAATAACAATGGCAATGGTGCCGTGTGCAAACGAGCCAAGTCAGCCATGGATTACTTATACAAATGTTTACCTGAAAATAATAGGATAAAAGGTCAATCATTACGCGATGCAAATTCTCATATATATCCGTGCGAACTGCCAGATGACGAGATACTGAACTGCTGCCTTCAACAAGCTGAGCGGAGCAAGGATGTGGCCCTCCTGTCGAACGACAAGAATCTCTGCAACAAGGCGGTCATAAACGGCGTGAAATTCTACAGCCTGTCCGGGCTGAGGAAGCTGCTGGAGAACAAGCCGCCGGCCAGTCACGACCCGGACCTGATCACCGGACTCAAGTACTACGAGAATGCTGTGTACCAGCTACTGTCCAATATATTGGAGAACGAGATGCGCGCCAAGTACAACAACCTGTGGCAGCACGTGCTGCTGAAGGCGCCGCCCTGGACGCTGCGCGACGTGCTGCAGTGCCTGCTCAAGCACTGGGTGGCCGTCTTCAACGACGTCTTCCCCAGGATACAGCACCTCATCCTCGACCTCAAGAACGCACTCACCGAGGTGCAGAGCAAAGACCCGACCACGATCTCGCAGTCGGACGTGTCGAACTTCAAGGAGCTGTCCCTGGACCTCGCCAAGAAGTGTCAGATAATCCCGGAGTACATGGAGCTGGCCAAGATCACGGTGGAGCGGCTGTCGCGCGACGCCCGCGACTCCGACGAGGAGGTGCCCGTCATCGAGGCCTTCGAGGGGCTCTGGACCGTGTTCTCCAGCTACTGTGCTAAGCTGTCCACCAACCTGGGCATCGTGCACGGCCTGGAGGACAGTCTCCCCCACGACGGGCCCGACAACCTGTCCAGCAAGCTGCCCATCATCAGCTGCCACATCAGCGGACTCACGAATGCTATCGAAGGCGCACTCAGCATAGAAGCTCACGACCCGAGCCTGGACGAGCACATGTACCGGCTCGAGACCACCTTCAAGGAGAGCCTCGCCTCGGCGGGGATGGACCCGGCCGTCGTCAACCAGGGGAACCTCACCGTCTTCTGCATCAAGTGCAGAAATATGCTCCAAGAGGCGTACACGAAGTTTGCTCAGCTCACCGAATTGTTAGACATATGCAATAAAAATACAATATTTAAATAA
Protein
MSSSCNETSQLPDGWVLCTSKSSPGRKYYFNKRTGKSSWTQPQLDESKDKSKKEKDNQRDMKSKEEEKKSLKRKNDGSEQNSPIRKQKEAKSSPGKCWPSLNEISLKNVETKRQSTSQEQTQKDIPGRAQESYRHSSSQRESVSRTDSPDRRTPAKNLANTRLTQLRAQLSSEAQKEENKDSTVKKRKMSTDTETSRNSRTEKSPSSSDVKSSTQSPSSESLPSIPSPSQFFAANKIISSMKAQLPEEYCDKVKQKDMFADIEQGIYNQVTEYPYMKHPATPPQFSEASKLVSAIKSKLTYKSSGVDCDLITYSSAQDRLDALRTRLSNDATNAEYSINIPESKEDFACNEAMDVDLKSEIKEPRSNTISPVSSLHEDTSDLKENLVLVVDTNIFIHELDFIKDVLNSHVKGYSEQPTLLVPWRVINELDRLKDNNNGNGAVCKRAKSAMDYLYKCLPENNRIKGQSLRDANSHIYPCELPDDEILNCCLQQAERSKDVALLSNDKNLCNKAVINGVKFYSLSGLRKLLENKPPASHDPDLITGLKYYENAVYQLLSNILENEMRAKYNNLWQHVLLKAPPWTLRDVLQCLLKHWVAVFNDVFPRIQHLILDLKNALTEVQSKDPTTISQSDVSNFKELSLDLAKKCQIIPEYMELAKITVERLSRDARDSDEEVPVIEAFEGLWTVFSSYCAKLSTNLGIVHGLEDSLPHDGPDNLSSKLPIISCHISGLTNAIEGALSIEAHDPSLDEHMYRLETTFKESLASAGMDPAVVNQGNLTVFCIKCRNMLQEAYTKFAQLTELLDICNKNTIFK

Summary

Pfam
PF00397   WW        + More
PF13638   PIN_4
Interpro
IPR002716   PIN_dom        + More
IPR001202   WW_dom       
IPR036020   WW_dom_sf       
IPR029060   PIN-like_dom_sf       
SUPFAM
SSF88723   SSF88723        + More
SSF51045   SSF51045       

Ontologies

Topology

Length:
813
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00386
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00012
outside
1  -  813
 
 

Population Genetic Test Statistics

Pi
28.452022
Theta
21.277342
Tajima's D
-1.468578
CLR
0.717483
CSRT
0.0627468626568672
Interpretation
Uncertain
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