Gene

KWMTBOMO07023

Pre Gene Modal

BGIBMGA010508

Annotation

PREDICTED:_probable_methyltransferase_TARBP1_[Bombyx_mori]

Location

Bomo_Chr12(+):1996830-2001478      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.886

CDS

ATGTACCGAATTGATCCACGAATAAAGAAATCTTTAGCCGCGAATATAGGAATTGATTCGCATTTTTTTAAATCTGCGAATTCTGAGAAAGCCAATGAAGGAAGTGCGAATAAGAAAGAGATCATCGGAGACTTGATAGTGGTAGCTTCTTTAGTAGATAAATTGCCGAACTTGGGCGGCATGGCCCGGACCAGCGAGGTGTTCGGGGTGAGGAGCTACGTGGTGGGCAGTCTGCGGCACCTCCAGGACAAGCAATTCCAGGGATTGAGTGTGTCAGCCGAGCGATGGATAGACGTTGAGGAAGTGAGACCCGGTCAGCCTCTGAAAGAGTTTCTGGCCAACAAGAAGTCGGAAGGTTACTCTGTGGTGGCAGCCGAGCAAACGTCGACCAGCGTCAAACTGGAAAGCTTTAAATTTCCAAAGAAAACTGTTTTATTACTCGGACACGAGAAGGAAGGCGTGCCGTGCGACCTGCTGCCGCTCATGGACCAGTGCGTGGAGATCCCGCAGCGCGGCGTCGTGCGCTCGCTCAACGTGCACGTCGCCGCCGCCATATTCGTCTGGGAGTACACCAGGCAAAACGTCTTGTGA

Protein

MYRIDPRIKKSLAANIGIDSHFFKSANSEKANEGSANKKEIIGDLIVVASLVDKLPNLGGMARTSEVFGVRSYVVGSLRHLQDKQFQGLSVSAERWIDVEEVRPGQPLKEFLANKKSEGYSVVAAEQTSTSVKLESFKFPKKTVLLLGHEKEGVPCDLLPLMDQCVEIPQRGVVRSLNVHVAAAIFVWEYTRQNVL

Uniprot

H9JLV6   A0A0L7LUU5   A0A2H1W2V7   A0A2A4K8N7   A0A194QTK3   A0A194PIT7   + More
A0A2J7R4Z6   V5HMX9   A0A2J7R4Y4   A0A2J7R4Y6   A0A2R5L604   L7MGU6   L7MGL0   E9H6E6   A0A0S7HMT4   A0A147BM09   A0A2J7R4Y8   B8A4Z4   A0A147BCS0   A0A0S7HQV1   A0A131YUS7   A0A1B6IZ52   A0A067RAR9   A7RT83   A0A2D4KT68   A0A087V057   A0A1A7XUZ7   E2A8V6   A0A0P5IQV3   A0A1A8PN31   A0A0P4ZKG1   A0A0P5VNE1   A0A0P5SW57   A0A0P4X8I4   A0A0N8CNW5   A0A0P6C8V0   A0A2C9JQH1   A0A0P5D1K9   A0A3B4B7G3   A0A151M2V4   Q0WLH7   A0A0P6HCJ9   A0A0P5N1P9   A0A0P6CZY3   A0A1A8M905   A0A3P9QIT3   A0A315VS85   F1Q8L2   A0A3B3TT16   A0A224XMH8   A0A3B3XK19   A0A3B3T950   K9KA80   A0A154NWE1   K1P8Q1   A0A2G8K9L9   A0A1A8HCX1   A0A3Q1C828   A0A3P9BC93   A0A3B4GW00   H2M436   S7NKP6   A0A3P9MKE3   I3JTV2   A0A3Q3BVS6   A0A1Y1MDV7   A0A3P9ITH8   L5K0I2   A0A1U8DDP0   M3XUM3   A0A1Q3DI49   A0A3P8V522   A0A1Q3DIS9   A0A3P8UYI1   A0A3Q0HAU2   A0A1A8IGW6   A0A3Q0HF71   A0A1A7WIE5   A0A1A7YB09   A0A1U8DGC2   A0A151Z8P4   A0A3B5K2I8   A0A1U8DNQ3   A0A3B3B6H9   A0A3P8NDU6   A0A3Q3F6X1   A0A1S3F1D8   A0A3Q0SW69   A0A226P673   A0A384C0B7   G1L9G6   D2I143   H0ZIX2   A0A1A8KAV7   A0A3Q3SXK3   A0A091JKD9   A0A3Q1JFH6   A0A3Q1FCJ3  

Pubmed

19121390    26227816    26354079    25765539    25576852    21292972    + More
29652888    23594743    26830274    24845553    17615350    20798317    15562597    25463417    22293439    29703783    29240929    22992520    29023486    25186727    17554307    28004739    23258410    24487278    21551351    29451363    24621616    20010809    20360741   

EMBL

BABH01005217    BABH01005218    BABH01005219    JTDY01000041    KOB79222.1    ODYU01005904    + More
SOQ47276.1    NWSH01000039    PCG80366.1    KQ461194    KPJ06876.1    KQ459603    KPI92963.1    NEVH01007399    PNF35899.1    GANP01005279    JAB79189.1    PNF35894.1    PNF35896.1    GGLE01000783    MBY04909.1    GACK01002625    JAA62409.1    GACK01002626    JAA62408.1    GL732597    EFX72710.1    GBYX01439776    JAO41582.1    GEGO01003574    JAR91830.1    PNF35897.1    BX324188    GEGO01006850    JAR88554.1    GBYX01439777    JAO41581.1    GEDV01006265    JAP82292.1    GECU01015514    JAS92192.1    KK852777    KDR16784.1    DS469536    EDO45339.1    IACL01089992    LAB11899.1    KK122567    KFM82996.1    HADW01020496    SBP21896.1    GL437663    EFN70185.1    GDIQ01209253    JAK42472.1    HAEH01007646    SBR82422.1    GDIP01213218    JAJ10184.1    GDIP01097680    JAM06035.1    GDIP01134469    JAL69245.1    GDIP01247863    JAI75538.1    GDIP01113327    JAL90387.1    GDIP01007072    LRGB01003375    JAM96643.1    KZS02969.1    GDIP01164163    JAJ59239.1    AKHW03006780    KYO18816.1    AK230224    BAF02030.1    GDIQ01021163    JAN73574.1    GDIQ01148654    JAL03072.1    GDIQ01085025    JAN09712.1    HAEF01011672    SBR52789.1    NHOQ01001229    PWA26081.1    GFTR01002729    JAW13697.1    JL619649    AEP99192.1    KQ434772    KZC03901.1    JH817871    EKC20062.1    MRZV01000761    PIK44701.1    HAEC01013000    SBQ81217.1    KE164339    EPQ17140.1    AERX01006398    GEZM01034249    JAV83853.1    KB031047    ELK05090.1    AEYP01092078    BDDD01008499    GAV91983.1    BDDD01009153    GAV92223.1    HAED01009453    SBQ95665.1    HADW01004105    SBP05505.1    HADX01004898    SBP27130.1    LODT01000037    KYQ90343.1    AWGT02000162    OXB74987.1    ACTA01123540    ACTA01131540    ACTA01139540    ACTA01147539    GL193949    EFB17917.1    ABQF01014617    HAEE01008749    SBR28799.1    KK502085    KFP20373.1   

Proteomes

UP000005204    UP000037510    UP000218220    UP000053240    UP000053268    UP000235965    + More
UP000000305    UP000000437    UP000027135    UP000001593    UP000054359    UP000000311    UP000076858    UP000076420    UP000261520    UP000050525    UP000242638    UP000261500    UP000261480    UP000261540    UP000076502    UP000005408    UP000230750    UP000257160    UP000265160    UP000261460    UP000001038    UP000265180    UP000005207    UP000264840    UP000265200    UP000010552    UP000189705    UP000000715    UP000187406    UP000265120    UP000076078    UP000005226    UP000261560    UP000265100    UP000261660    UP000081671    UP000261340    UP000198419    UP000261680    UP000008912    UP000007754    UP000261640    UP000053119    UP000265040    UP000257200   

PRIDE

H9JLV6    L7MGU6    L7MGL0   

Pfam

PF00588   SpoU_methylase

Interpro

IPR001537   SpoU_MeTrfase        + More
IPR029028   Alpha/beta_knot_MTases       
IPR029026   tRNA_m1G_MTases_N       
IPR016024   ARM-type_fold       
IPR025806   Prob_MeTrfase_TARBP1       

SUPFAM

SSF75217   SSF75217        + More
SSF48371   SSF48371       

Gene 3D

3.40.1280.10    

ProteinModelPortal

H9JLV6   A0A0L7LUU5   A0A2H1W2V7   A0A2A4K8N7   A0A194QTK3   A0A194PIT7   + More
A0A2J7R4Z6   V5HMX9   A0A2J7R4Y4   A0A2J7R4Y6   A0A2R5L604   L7MGU6   L7MGL0   E9H6E6   A0A0S7HMT4   A0A147BM09   A0A2J7R4Y8   B8A4Z4   A0A147BCS0   A0A0S7HQV1   A0A131YUS7   A0A1B6IZ52   A0A067RAR9   A7RT83   A0A2D4KT68   A0A087V057   A0A1A7XUZ7   E2A8V6   A0A0P5IQV3   A0A1A8PN31   A0A0P4ZKG1   A0A0P5VNE1   A0A0P5SW57   A0A0P4X8I4   A0A0N8CNW5   A0A0P6C8V0   A0A2C9JQH1   A0A0P5D1K9   A0A3B4B7G3   A0A151M2V4   Q0WLH7   A0A0P6HCJ9   A0A0P5N1P9   A0A0P6CZY3   A0A1A8M905   A0A3P9QIT3   A0A315VS85   F1Q8L2   A0A3B3TT16   A0A224XMH8   A0A3B3XK19   A0A3B3T950   K9KA80   A0A154NWE1   K1P8Q1   A0A2G8K9L9   A0A1A8HCX1   A0A3Q1C828   A0A3P9BC93   A0A3B4GW00   H2M436   S7NKP6   A0A3P9MKE3   I3JTV2   A0A3Q3BVS6   A0A1Y1MDV7   A0A3P9ITH8   L5K0I2   A0A1U8DDP0   M3XUM3   A0A1Q3DI49   A0A3P8V522   A0A1Q3DIS9   A0A3P8UYI1   A0A3Q0HAU2   A0A1A8IGW6   A0A3Q0HF71   A0A1A7WIE5   A0A1A7YB09   A0A1U8DGC2   A0A151Z8P4   A0A3B5K2I8   A0A1U8DNQ3   A0A3B3B6H9   A0A3P8NDU6   A0A3Q3F6X1   A0A1S3F1D8   A0A3Q0SW69   A0A226P673   A0A384C0B7   G1L9G6   D2I143   H0ZIX2   A0A1A8KAV7   A0A3Q3SXK3   A0A091JKD9   A0A3Q1JFH6   A0A3Q1FCJ3  

PDB

2HA8     E-value=1.67976e-47,     Score=474

KEGG

101738311    K15333 tRNA guanosine-2'-O-methyltransferase [EC:2.1.1.34] | (RefSeq) probable methyltransferase TAR

GO

GO:0008173   GO:0003723   GO:0006396   GO:0030488   GO:0016423   GO:0016021   GO:0008168   GO:0007018   GO:0030286   GO:0005515   GO:0004319   GO:0004320   GO:0016295   GO:0016296  

Length:

196

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.408

Exp number, first 60 AAs:

0.0043

Total prob of N-in:

0.38085

outside

1  -  196

 

 

Pi

19.585466

Theta

21.930055

Tajima's D

-1.46214

CLR

0.538287

CSRT

0.0623468826558672

Interpretation

Uncertain