SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO07020
Pre Gene Modal
BGIBMGA010463
Annotation
PREDICTED:_DDB1-_and_CUL4-associated_factor_8_[Amyelois_transitella]
Location
Bomo_Chr12(-):1963603-1982199      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 4.638
 

Sequence

CDS
ATGGATGATAATAATTCCAGCGATGACGAATTTAGAGAATCTCCTGCAAGTCCCAAATCAGGTGGTAAAAAGCTTAAACTTAACGACGGAAGCTCTCAGGACAGTTTCAAGGAGACTGTTTCGAACAGCAAAGATGAAAATATTGATAGTGGAGTGTCAGCAGATAAATCAGAGAGCACCAGCAGTGAAGGTCACAGCGCTGGAACATCAGAAGGGCCGTCTAACGAGTTGGTAAATGCAGCCCCTTCGACCAGTAATATTCATACGATACTTCTGAACATACGACGTCCAAAACGCAATAGAAATTACCGAAAAAGGAAGACGCCTGAGCGTGATACTGATAGTAATGATACTTCTCAAGATTCTGATGATTTATCTAGTGAAGACACTCCACAGCCAGCGAGACAGAATGAGAATAGTAATTCAGAAACAGAGAGCGATGATCAGCCAAGATATATGGATTTGTGTGCAACAGAATCTGATAGTTCAAATAGTGGTTCACAAAACTCACCAGACAGTCACACGTTTGAAGATTCAGATGAAATGATACAACTAAACTCTGGAGACACAGACAGCGATGAAGATGTGCCATGGAGTAGATTGAATGATGATAATGATGAAAATGAAGAATCAGAAGAAAATAGACAAAAAACACCAAGTGTACTTTTAAAAGCAAAACCAGAGCACAATTATGTGATTTTGCAAGAAATCATAAAACGCGAGATGGGAATAACATTTCCCTGCGGTAAAACGACGAAGACAGATGTGATATTTGAACAGAATTTCTATGGATCACTTCATGCTGTATACAGACTGGAGAAATTGCATCAGCTACAAAAACACAGGGGCTGTGTTAATTCGATAAATTTTCACCCCGAAGGTCGGCTTTTAGCCTCCGGTTCTGATGACACAAACGTCGTGATATGGGATTGGGCCAGGAAGAAAGTGATTCAAACTATAAAAACGGGTCACAAGTCAAATGTTTTCCAGAGCAAGTTTCTGCATTTGAATTCTAGGAGTCAGCTAAACATAGTCACGTGTGCTCGAGATGGCCAGGTCCGGCTGGTGCAGTGTCCGTCGAGCGGCGGCGGCGCGACCCGGCGGCGCCTCATGGGGCACTCCCGCGCCGCGCACAAGCTGCACGTGAGCGGCGCCGAGCCGCACCGCGTGCTGTCCGCCGGCGAGGACGGGCTCGTGCTGCACTGCGACCTGCGCCACGACAACGTCAACAGACTGGTGTCGGTGAAGGAGTGCGGGCGCGCGGTGCCGCTGTACAGCGTGGACGCGCACCCGCTGGAGCCGCGCGTGCTGCTGCTGGCGGGCCGGGACCGCTTCGTGCGCGCCTACGACACGCGCCGCGCCGCCTCCCCGCTCGCGCTCTACTGCCCCGCCGCCTTCACCAGCCGCAACGGCAGCGACTCGAAGCGCGCCAAGCTGTCGATGATGCACCTGACGTGCGCGGTGTACAGCCACGACGGCAGCGAGATCCTGGGCACCTACAACGACGACGATGTCTACCTCTTTGATGCCAAAAACGACGTATACGATAAGGACAGCACGAGCGCGTCGGAGGGCTACTCGAAGCGCTACAGCGGGCACCGCAACAGCGCCACGTACAAGGGCGTGTCGTTCTTCGGGCCCGGCAGCGAGTACGTGGTGTCGGGCTCGGACTGCGCGCACATCTACGTGTGGGACAAGAGCTCCGAGGCCATCGTGCAGTGGCTGCACGGCGACGCCAACGGAGTGGTGAACTGCATAGAGCCTCATCCCCGTTTCCCCGTGCTGGCGACCAGCGGCCTCGACAAGGACGTCAAGATATGGGCCCCCTACGCTCGCGCAGACCCCAAGTACGAAGGATTAGAAAAGGTTGTACGTGAAAATAGCGAGTCCCGACGAAGGAGTCCGCTGTTCAACGACTTCCTGCCGACCGTGTACAACGCGTGGCGCAGCGAGAACCAGATGTACGCGGACGGCGACATGTCCTCCCCGTACGGGGGGAACATCGAGTTCGACGGAAACGTCTGCACCGCCTTCTAG
Protein
MDDNNSSDDEFRESPASPKSGGKKLKLNDGSSQDSFKETVSNSKDENIDSGVSADKSESTSSEGHSAGTSEGPSNELVNAAPSTSNIHTILLNIRRPKRNRNYRKRKTPERDTDSNDTSQDSDDLSSEDTPQPARQNENSNSETESDDQPRYMDLCATESDSSNSGSQNSPDSHTFEDSDEMIQLNSGDTDSDEDVPWSRLNDDNDENEESEENRQKTPSVLLKAKPEHNYVILQEIIKREMGITFPCGKTTKTDVIFEQNFYGSLHAVYRLEKLHQLQKHRGCVNSINFHPEGRLLASGSDDTNVVIWDWARKKVIQTIKTGHKSNVFQSKFLHLNSRSQLNIVTCARDGQVRLVQCPSSGGGATRRRLMGHSRAAHKLHVSGAEPHRVLSAGEDGLVLHCDLRHDNVNRLVSVKECGRAVPLYSVDAHPLEPRVLLLAGRDRFVRAYDTRRAASPLALYCPAAFTSRNGSDSKRAKLSMMHLTCAVYSHDGSEILGTYNDDDVYLFDAKNDVYDKDSTSASEGYSKRYSGHRNSATYKGVSFFGPGSEYVVSGSDCAHIYVWDKSSEAIVQWLHGDANGVVNCIEPHPRFPVLATSGLDKDVKIWAPYARADPKYEGLEKVVRENSESRRRSPLFNDFLPTVYNAWRSENQMYADGDMSSPYGGNIEFDGNVCTAF

Summary

Uniprot
H9JLR1   A0A2A4K7W8   A0A3S2M9T9   A0A2W1B8H5   A0A2H1W2L5   A0A212EII8   + More
E9HJZ2  
Pubmed
19121390    28756777    22118469    21292972   
EMBL
BABH01005213    BABH01005214    NWSH01000039    PCG80365.1    RSAL01000003    RVE54725.1    + More
KZ150274    PZC71658.1    ODYU01005904    SOQ47277.1    AGBW02014643    OWR41280.1    GL732665    EFX67950.1   
Proteomes
UP000005204    UP000218220    UP000283053    UP000007151    UP000000305   
PRIDE
H9JLR1   
Pfam
PF00400   WD40
Interpro
IPR015943   WD40/YVTN_repeat-like_dom_sf        + More
IPR017986   WD40_repeat_dom       
IPR001680   WD40_repeat       
IPR036322   WD40_repeat_dom_sf       
SUPFAM
SSF50978   SSF50978       
Gene 3D
2.130.10.10    
ProteinModelPortal
H9JLR1   A0A2A4K7W8   A0A3S2M9T9   A0A2W1B8H5   A0A2H1W2L5   A0A212EII8   + More
E9HJZ2  
PDB
4CY5     E-value=5.40104e-10,     Score=157

Ontologies

KEGG
101744761    K11804 WD repeat-containing protein 42A | (RefSeq) DDB1- and CUL4-associated factor 8
GO
GO:0005515   GO:0006071   GO:0006468   GO:0007018   GO:0030286   GO:0004319   GO:0004320   GO:0016295   GO:0016296  

Topology

Length:
678
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00169
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00048
outside
1  -  678
 
 

Population Genetic Test Statistics

Pi
206.194126
Theta
159.214271
Tajima's D
0.382785
CLR
0.588849
CSRT
0.48207589620519
Interpretation
Uncertain
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