SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO07010
Pre Gene Modal
BGIBMGA010470
Annotation
PREDICTED:_nesprin-1-like_isoform_X1_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 4.275
 

Sequence

CDS
ATGTCGGACGGCCGCGAGTCCCCGTCGCAGAGCGGTCTACGGAACCGCGTCAGTTTCTTCGAAAAAGTATGGAGCGGACAGTCCAGTAATGACGCCATCGATGCTACCACCGATGTAGACGAGATAGAGCGTCGCATCGAGCAGCGCAAGAGACGACCCGACTCCCCGAAGATCGAGGTCAAATTGAAACACACCAGAGACACGGAATCGCCGACCAAATCGTACGAGTCTGCTTTTCCGAATTTGAAGTTGAGGCATGTCGAACCCGGGGAAACTGTCGAAAAGCACGAGCGGGAGGTCGAAGAGGGCGACCTTGCCGCAGGAGTGCGTCTCGTCAAATTCGAAAGGGTCACGGTCAAACGGACAGTTACGGAAACCAGGAGCGAGGAGCGATCCGAATCGCCCCAACACGAATGGTACTCCGAATACAAGCAACAGACTTTACAGACTGGCCCCAGGAAGGACTACTTGCGGAGCAAATCGGAATATGACTCTCACATCGCAGAAATTCGCGGCAGACGAGCGTACGGCCCACCTGATGGTGAGTGGTTACCGTCGCCCATGGACTTCAGCAATGCCAAGGGCAGAGCCAAGCCGCTGCCTACCGCTATATCTTGTAGGTCCTAA
Protein
MSDGRESPSQSGLRNRVSFFEKVWSGQSSNDAIDATTDVDEIERRIEQRKRRPDSPKIEVKLKHTRDTESPTKSYESAFPNLKLRHVEPGETVEKHEREVEEGDLAAGVRLVKFERVTVKRTVTETRSEERSESPQHEWYSEYKQQTLQTGPRKDYLRSKSEYDSHIAEIRGRRAYGPPDGEWLPSPMDFSNAKGRAKPLPTAISCRS

Summary

Pfam
PF00435   Spectrin        + More
PF00307   CH
Interpro
IPR018159   Spectrin/alpha-actinin        + More
IPR036872   CH_dom_sf       
IPR001715   CH-domain       
IPR002017   Spectrin_repeat       
IPR001589   Actinin_actin-bd_CS       
SUPFAM
SSF47576   SSF47576       
Gene 3D

Ontologies

Topology

Length:
208
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.06593
outside
1  -  208
 
 

Population Genetic Test Statistics

Pi
181.60497
Theta
149.402702
Tajima's D
0.626019
CLR
0
CSRT
0.550522473876306
Interpretation
Uncertain
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