Gene
KWMTBOMO07008
Pre Gene Modal
BGIBMGA010504
Annotation
PREDICTED:_RDS/peripherin-like_protein_xRDS35_[Papilio_machaon]
Location in the cell
PlasmaMembrane Reliability : 3.728
Sequence
CDS
ATGGGCGCTCTGGTGAAGGAGCTCAGCTCCTCGTTGCGAGTCGGCATGTCTCAGTATTTAATTGAACCATCCTGGAAGAAGCTCCTGGACACGATGCAAGTAGATTTGTGTTGTTGTGGTGCCGATAGACCTGGGGACTGGCACGAGATACCGTGGCTCAGCGTGGACTTCCTCAACGAGAACTCAAGTGTCGTCATGAAATTAGCAGGAACGGATGGTAAAATATTACCGCCTGTATCTCCGTACTCATGCTGCACACCGCGGGTCCTAGCGCCGTGCTACCACGATCCTTTGCAGCAGTGGTCCGACACTACAGCATGGAGAGCATCTCCGCTAGTGGCAGCGTCGCTGCACACGAGGGGCTGCGTGGAGGCGGTGCGTGCTCCACTCGTCAGAGCGCTGTTGGCGTTGCAGTTTTTCAACATCCTCATCCTTATATTTCAAGTCTTAATAATATTACTGATACAATTGTTGAGTACGAGCGCGCGAGCGGCGGCTTTGCGGGGGGAGTGCGGGGGCGCGGGGCGGGGCTCGCTGTTCGGTACGCCTGCACCCGCGCCGAGCGTTGACCCTGAACGCCGCGTGGTGGCGGGCTGCACGTGGAATGTGGGGGGCGGGCGCCGAGCCGCCGTCCGAGCGAGGAGCAGCTATCCATATTTATCATGA
Protein
MGALVKELSSSLRVGMSQYLIEPSWKKLLDTMQVDLCCCGADRPGDWHEIPWLSVDFLNENSSVVMKLAGTDGKILPPVSPYSCCTPRVLAPCYHDPLQQWSDTTAWRASPLVAASLHTRGCVEAVRAPLVRALLALQFFNILILIFQVLIILLIQLLSTSARAAALRGECGGAGRGSLFGTPAPAPSVDPERRVVAGCTWNVGGGRRAAVRARSSYPYLS
Summary
Similarity
Belongs to the tetraspanin (TM4SF) family.
Uniprot
Pubmed
EMBL
Proteomes
Pfam
PF00335 Tetraspanin
Interpro
SUPFAM
SSF48652
SSF48652
Gene 3D
ProteinModelPortal
PDB
2M7Z
E-value=0.014979,
Score=87
Ontologies
GO
Topology
Length:
221
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
22.447
Exp number, first 60 AAs:
0.00013
Total prob of N-in:
0.15124
outside
1 - 135
TMhelix
136 - 158
inside
159 - 221
Population Genetic Test Statistics
Pi
155.836262
Theta
148.195909
Tajima's D
-0.701129
CLR
2.848188
CSRT
0.1994400279986
Interpretation
Uncertain
