Silkworm Genome Informatics Database

Gene

KWMTBOMO07003 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA010473

Annotation

PREDICTED:_dynein_heavy_chain_2?_axonemal_[Amyelois_transitella]

Location

Bomo_Chr12(-):1575132-1579069 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 1.827 Nuclear Reliability : 1.576

CDS

ATGCCCGCCGACTTAAATCAATTGGCCTCAGCCATCGCCACGTACGAGCATCTGATGTCCGATATCAGCCGGGTCCAGCACACCTTCCCGCCCATCACTGACCAAATGCAGACTTTGGCGAAATTTGAAGTAGAACTAAGTTCCGATATGGTCGCTCGTCACGAGAATATACCAGTCATTTGGGCGGAATATTTAGCGCTATTGGAAGAAGCGAAAAAAGCCTTAGAATTGAATAAGGACAAGTTTAAAGCGGACTTATTGGAGCAAGCTGAGGACACCAGTAAATCTGGACCTGCAAAAGATGGAAAAAGAACTGGAAAAGCTGGAAGAGGTTTGGGGATTAGTTTTTCAATGGGAGGAGTCGTGGGAAAAATACAAAACTCAAACGTTCTGGGAGATGGAAACCGATGA

Protein

MPADLNQLASAIATYEHLMSDISRVQHTFPPITDQMQTLAKFEVELSSDMVARHENIPVIWAEYLALLEEAKKALELNKDKFKADLLEQAEDTSKSGPAKDGKRTGKAGRGLGISFSMGGVVGKIQNSNVLGDGNR

Uniprot

A0A139WBF9 A0A1S3JQN3 A0A2C9JP30 A0A2C9JP23 A0A0L0H969 E1ZVJ0 + More
A0A2G9P413 A0A2G9SER8 F2U1V3

Pubmed

18362917 19820115 15562597 20798317

EMBL

KQ971372 KYB25181.1 KQ257464 KNC97489.1 GL434547 EFN74800.1 + More
KV923439 PIN98091.1 KV924144 PIO38637.1 GL832959 EGD81605.1

Proteomes

UP000007266 UP000085678 UP000076420 UP000053201 UP000000311 UP000007799 + More

Pfam

PF08385   DHC_N1        + More
PF12777   MT
PF18199   Dynein_C
PF17852   Dynein_AAA_lid
PF18198   AAA_lid_11
PF12780   AAA_8
PF03028   Dynein_heavy
PF12781   AAA_9
PF12774   AAA_6
PF08393   DHC_N2
PF17857   AAA_lid_1

Interpro

IPR027417   P-loop_NTPase        + More
IPR024317   Dynein_heavy_chain_D4_dom
IPR024743   Dynein_HC_stalk
IPR035706   AAA_9
IPR042222   Dynein_2_N
IPR041658   AAA_lid_11
IPR042228   Dynein_2_C
IPR041228   Dynein_C
IPR035699   AAA_6
IPR004273   Dynein_heavy_D6_P-loop
IPR013602   Dynein_heavy_dom-2
IPR042219   AAA_lid_11_sf
IPR013594   Dynein_heavy_dom-1
IPR041466   Dynein_AAA5_ext
IPR003593   AAA+_ATPase
IPR041589   DNAH3_AAA_lid_1
IPR026983   DHC_fam
IPR025662   Sigma_54_int_dom_ATP-bd_1

SUPFAM

SSF52540 SSF52540

Gene 3D

1.10.8.720 1.20.140.100 3.20.180.20

ProteinModelPortal

A0A139WBF9 A0A1S3JQN3 A0A2C9JP30 A0A2C9JP23 A0A0L0H969 E1ZVJ0 + More
A0A2G9P413 A0A2G9SER8 F2U1V3

KEGG

101737362 K10408 dynein heavy chain, axonemal | (RefSeq) dynein heavy chain 2, axonemal-like

GO

GO:0003777 GO:0005524 GO:0007018 GO:0030286

PANTHER

PTHR10676

Length:

136

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.06675

Exp number, first 60 AAs:

0.00041

Total prob of N-in:

0.08249

outside

1 - 136

Pi

255.82363

Theta

186.911507

Tajima's D

1.111157

CLR

0

CSRT

0.693515324233788

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics