SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO06988
Annotation
reverse_transcriptase_[Bombyx_mori]
Location in the cell
Mitochondrial   Reliability : 2.314
 

Sequence

CDS
ATGAAACTAGGGTGCCCTCCTCCCGGGCCTAAGCGTAATCTGTTACGCAGACGACACGCTGGTCGTGGCCCGGGGGGGAGTTTTGCTGAGTCTGCTCGTCTTGCCACCGCTGGGGTGGCGCATGTCGTCGGCAAAATCAGGAGATTGGGCCTCGACGTGGCGCTCAGTAAATCCGAGGCCATGTGGTTCCACAGGCCCCGGAGAGTGCCACCTGTCGATGCCCATATCATGGTTGGAGGCGTCCGTATCGAGGTCGGGGTGCAGTTGAAGTACCTCGGCCTCATTCTGGACAGTCGTTGGACCTTCCGTGCTCACTTTCAGAACCTGGTCCCTCGTTTGTTGGGGGTGGCCGGCGCGTTAAGCCGGCTTCTGCCCAACGTGGGGGGGCCTGACCAGGTGACGCGCCGTCTCTATACGGGGGTGGTGCGATCAATGGCCCTATACGGGGCGCCCGTGTGGGGCCAGTCCCTGGCCGTGGGGGTAGCGAAGCTGCTGCAACGGCCGCAACGCACCATCGCGGTCAGGGTCGTCCGTGGCTATCGCACCATCTCCTTCGAGGCGGCGTGTGTACTGGCTGGGACGCCGCCTTGGGTCCTGGAGGCGGAGGCGCTCGCCGCTGACTATCAGTGGCGGGCTGACCTTCGTGCCCGGGGCGTGGCACGTCTCAGCCCCAGTGTGGTCAGAGCGCGGAGGGCCCAATCTCGGCGGTCCGTGCTGGAGTCATGGTCCAGACGGCTGGCCGATCCTTCGGCTGGTCGTAGGACCGTCGAGGCGATTCGCCCGGTTCTTGTGAACTGGGTGAATCGTGACAGAGGACGCCTCACTTTCCGGCTCACGCAGGTGCTCACTGGGCATGGTTGCTTCGGTGAGTTCCTGCACCGGATCGGAGCCGAGCCGACGGCAGAGTGCCACCATTGTGGTTGCGACTTGGACACGGCGGAGCACACGCTCGTTGACTGCCCCGCATGGGAGGGGTGGCGCCGTGTCCTCGTCGCAAAAATAGGAAACGACTTGTCGTTGCCGAGTGTTGTGGCATCGATGCTCGGTGACGACGAGTCGTGGAAGGCGATGCTCGACTTCTGCGAGTGCACCATCTCGCAGAAGGAGGCGGCGGGGCGCGTGAGAGACGCACAGGCCCGCCGCCGTCGAGCGGGGGCCAGGGAGGCGGATCTCGCCCAAGCCCTGGCCCTCTAA
Protein
MKLGCPPPGPKRNLLRRRHAGRGPGGSFAESARLATAGVAHVVGKIRRLGLDVALSKSEAMWFHRPRRVPPVDAHIMVGGVRIEVGVQLKYLGLILDSRWTFRAHFQNLVPRLLGVAGALSRLLPNVGGPDQVTRRLYTGVVRSMALYGAPVWGQSLAVGVAKLLQRPQRTIAVRVVRGYRTISFEAACVLAGTPPWVLEAEALAADYQWRADLRARGVARLSPSVVRARRAQSRRSVLESWSRRLADPSAGRRTVEAIRPVLVNWVNRDRGRLTFRLTQVLTGHGCFGEFLHRIGAEPTAECHHCGCDLDTAEHTLVDCPAWEGWRRVLVAKIGNDLSLPSVVASMLGDDESWKAMLDFCECTISQKEAAGRVRDAQARRRRAGAREADLAQALAL

Summary

EMBL
AB090825    BAC57926.1    AB126050    BAD86650.1    KZ150386    PZC71062.1    + More
AB078935    BAC06462.1    AB078931    BAC06456.1    AB078930    BAC06454.1    AB078929    BAC06452.1    KZ149896    PZC78733.1    RSAL01000481    RVE41577.1    D85594    BAA19776.1    LBMM01012027    KMQ86470.1    KZ150308    PZC71477.1    LBMM01008861    KMQ88580.1    LBMM01014132    KMQ85305.1    GL450953    EFN80213.1    LBMM01009494    KMQ88097.1    LBMM01019839    KMQ83438.1    LBMM01019838    KMQ83439.1    LBMM01006671    KMQ90407.1    LBMM01006954    KMQ90166.1    LBMM01006657    KMQ90417.1    LBMM01005733    KMQ91252.1    QOIP01000010    RLU18098.1    LBMM01004272    KMQ92618.1    LBMM01007036    KMQ90099.1    LBMM01008682    KMQ88705.1    LBMM01002052    KMQ95336.1    QOIP01000031    RLU14697.1    LBMM01006725    KMQ90373.1    LBMM01006063    KMQ90967.1    LBMM01008349    KMQ88951.1    LBMM01004634    KMQ92224.1    LBMM01003245    KMQ93755.1    LBMM01003988    KMQ92922.1    LBMM01015018    KMQ84954.1    LBMM01005216    KMQ91703.1    LBMM01005634    KMQ91349.1    LBMM01004505    KMQ92346.1    LBMM01005948    KMQ91066.1    LBMM01007425    KMQ89740.1    LBMM01009738    KMQ87908.1    LBMM01015025    KMQ84953.1    LBMM01002480    KMQ94776.1    LBMM01007659    KMQ89538.1    LBMM01008422    KMQ88894.1    LBMM01008448    KMQ88867.1    GGMR01011974    MBY24593.1    LBMM01014122    KMQ85315.1    LBMM01014956    KMQ84982.1    LBMM01004697    KMQ92167.1    GGMS01012744    MBY81947.1    LBMM01005474    KMQ91485.1    QOIP01000007    RLU20280.1    LBMM01005465    KMQ91492.1    LBMM01008278    KMQ89009.1    LBMM01012412    KMQ86235.1    GGMR01014918    MBY27537.1    GGMR01015354    MBY27973.1    RSAL01003504    RVE40273.1    LBMM01006496    KMQ90570.1    KMQ94772.1    GGMR01016864    MBY29483.1    ABLF02005203    ABLF02041316    GFXV01001748    MBW13553.1    LBMM01021647    KMQ83033.1    ABLF02041886    ABLF02011238    GGMR01019609    MBY32228.1    ABLF02015311    ABLF02015320    ABLF02034009    ABLF02043484    ABLF02004597    ABLF02041324    GGMR01015159    MBY27778.1    ABLF02017307    ABLF02034925    ABLF02004854    ABLF02041317    GFXV01003903    MBW15708.1    ABLF02016435    ABLF02016436    ABLF02064751    ABLF02016099    ABLF02041594   
Pfam
PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF01553   Acyltransferase
PF07776   zf-AD
PF00096   zf-C2H2
PF03372   Exo_endo_phos
PF00098   zf-CCHC
PF01421   Reprolysin
PF13843   DDE_Tnp_1_7
PF05699   Dimer_Tnp_hAT
Interpro
IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR002123   Plipid/glycerol_acylTrfase       
IPR012934   Znf_AD       
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR024079   MetalloPept_cat_dom_sf       
IPR001590   Peptidase_M12B       
IPR029526   PGBD       
IPR037220   BED_dom       
IPR012337   RNaseH-like_sf       
IPR008906   HATC_C_dom       
SUPFAM
SSF56219   SSF56219        + More
SSF57667   SSF57667       
SSF57756   SSF57756       
SSF53098   SSF53098       
SSF140996   SSF140996       
Gene 3D

Ontologies

Topology

Length:
397
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.13392
Exp number, first 60 AAs:
0.00651
Total prob of N-in:
0.00268
outside
1  -  397
 
 

Population Genetic Test Statistics

Pi
45.060834
Theta
54.143834
Tajima's D
-0.52253
CLR
0
CSRT
0.230838458077096
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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