Gene

KWMTBOMO06986

Pre Gene Modal

BGIBMGA010484

Annotation

PREDICTED:_DDB1-_and_CUL4-associated_factor_7_[Papilio_xuthus]

Location

Bomo_Chr12(-):1098900-1105221      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 0.923

CDS

ATGCCACACAGCAGTTCGAGTACCAGTTCAGGCACGAAACGTAAAGAAATATACAAATACCAAGCGCCATGGCCATTATACTCAATGAATTGGTCTGTCAGACCTGACAAGAGATTCAGGTTAGCCCTGGGCAGTTTTGTTGAGGAATACAACAATAAAGTACAAATAATTTCCCTTGATGAAGACACAAGTGAGTTCACTGCAAAAAGTACCTTTGATCACCCGTACCCGACCACCAAGATTATGTGGATACCTGATAGCAAGGGGGTGTATCCAGACTTGTTGGCAACTAGCGGTGATTATCTACGCATATGGCGTGCCGGAGAGCCGTACACATTATTCGAATGTGTCCTAAATAATAATAAGAATTCTGACTTCTGTGCTCCTCTTACATCCTTTGATTGGAACGAAGTGGATCCTAACCTCATTGGCACCAGTAGTATTGACACGACCTGCACCATCTGGGGCTTGGAGACTGGACAGGTCTTGGGCAGGGTCAATGAAGTGTCTGGGCACGTGAAGACTCAGTTGATCGCTCATGATAAGGAAGTGTACGACATAGCGTTCAGTAGGGCCGGCGGGGGGCGAGATATGTTCGCTTCCGTGGGCGCCGACGGATCCGTCCGGATGTTCGACCTCAGGCATCTAGAACATTCCACCATCATTTATGAGGACCCTCAGCACACCCCGCTGCTCCGCCTGGCCTGGAACAAGCAGGACCCGAACTACCTGGCCACCATCGCCATGGACGCGTGCGAGGTGATCATACTGGACGTGCGCGTGCCCTGCACCCCGGTGGCCAGGCTCAACAACCACAGGGCGTGCGTCAACGGCATCGCCTGGGCGCCGCACAGTTCTTGTCACATCTGCACCGCCGGAGACGACCACCAGGCCCTCATCTGGGACATACAGCAGATGCCGCGCGCCATAGAGGACCCGATCCTCGCCTACACCGCCGCCGAGGGAGAGGTCAACCAGATCCAGTGGGGCGCCACACAACCCGACTGGATCGCCATCTGCTACAACCGGCACGCCGAGATACTGCGCGTCTGA

Protein

MPHSSSSTSSGTKRKEIYKYQAPWPLYSMNWSVRPDKRFRLALGSFVEEYNNKVQIISLDEDTSEFTAKSTFDHPYPTTKIMWIPDSKGVYPDLLATSGDYLRIWRAGEPYTLFECVLNNNKNSDFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWGLETGQVLGRVNEVSGHVKTQLIAHDKEVYDIAFSRAGGGRDMFASVGADGSVRMFDLRHLEHSTIIYEDPQHTPLLRLAWNKQDPNYLATIAMDACEVIILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAGDDHQALIWDIQQMPRAIEDPILAYTAAEGEVNQIQWGATQPDWIAICYNRHAEILRV

Similarity

Belongs to the class-I aminoacyl-tRNA synthetase family.

Uniprot

A0A3S2PGH9   A0A2W1BTC9   A0A2A4K3T6   A0A2H1W9M2   A0A212EX12   A0A194QPE3   + More
A0A194QIX9   A0A2Z5U7M8   A0A2J7RNU1   A0A2J7RNU3   A0A2P8YLS6   A0A2J7RNU2   A0A067R119   A0A232F4N0   T1HWD9   A0A154PGF2   A0A0P4VR09   E2BQZ7   A0A195CU17   A0A023F5V4   A0A0L7QTZ2   A0A2A3EE51   A0A088AS01   A0A0V0G9X0   A0A069DRZ7   A0A1Y1L0Z3   A0A026WM51   A0A1B6ERH5   A0A1W4WGR8   A0A0J7KM37   A0A1B6KXQ2   D6X2C7   A0A0M9AAL1   E2AHK0   A0A1B0GAE8   N6TMD4   A0A1L8DAL1   A0A1B0DLI1   A0A151WMK5   A0A0A9YD58   A0A1B0B9P1   A0A195E3L4   A0A182JKY7   A0A158NKW7   A0A1L8DAV0   A0A023ERD7   Q16QR0   A0A2H8TJZ8   J9JTS2   A0A2S2PAH2   A0A2M4CS55   A0A2S2Q3M4   A0A1A9XKN4   A0A182XY71   A0A182VVE9   A0A182LU38   A0A2M4CX96   A0A1B6DRM6   A0A1S4FSU1   A0A182KFY9   A0A182GM34   A0A084VVB6   A0A182RYS3   A0A182PU07   B0WSY7   A0A182QEA9   A0A182USZ9   Q7PRP8   A0A195FTS7   A0A2M4BTQ5   F4WAE3   W5JWV6   A0A182FID2   A0A2M4APR6   A0A2R7VUR6   A0A182X7H2   F5HJU6   A0A182I9W8   B4H2Z9   A0A1A9X3A6   A0A0K8V9Q8   A0A1A9UE49   A0A034WFR4   T1JKQ2   A0A1W4VWR8   B4NUV7   A0A3B0JWV7   Q29JF3   B4PZK0   B3MRG1   B3NY65   A0A0A1XRP9   A0A1B0A2Y0   Q9VR53   A0A1I8N6U4   A0A1I8Q193   B4JWR4   B4L2V4   B4M382   A0A0N8AZA6  

Pubmed

28756777    22118469    26354079    29403074    24845553    28648823    + More
27129103    20798317    25474469    26334808    28004739    24508170    30249741    18362917    19820115    23537049    25401762    26823975    21347285    24945155    17510324    25244985    26483478    24438588    12364791    21719571    20920257    23761445    14747013    17210077    17994087    25348373    15632085    17550304    25830018    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    25315136    18057021   

EMBL

RSAL01000043    RVE50738.1    KZ149906    PZC78309.1    NWSH01000192    PCG78564.1    + More
ODYU01005429    ODYU01006905    SOQ46262.1    SOQ49174.1    AGBW02011856    OWR46011.1    KQ461194    KPJ06845.1    KQ458671    KPJ05513.1    AP017552    BBB06984.1    NEVH01002147    PNF42506.1    PNF42507.1    PYGN01000503    PSN45205.1    PNF42505.1    KK852819    KDR15607.1    NNAY01000958    OXU25731.1    ACPB03008408    KQ434892    KZC10544.1    GDKW01001640    JAI54955.1    GL449840    EFN81883.1    KQ977306    KYN03629.1    GBBI01002145    JAC16567.1    KQ414736    KOC62118.1    KZ288271    PBC29744.1    GECL01001556    JAP04568.1    GBGD01002056    JAC86833.1    GEZM01067904    GEZM01067903    JAV67333.1    KK107159    QOIP01000001    EZA56741.1    RLU26222.1    GECZ01029259    JAS40510.1    LBMM01005671    KMQ91304.1    GEBQ01025454    GEBQ01023741    JAT14523.1    JAT16236.1    KQ971371    EFA09880.1    KQ435710    KOX79886.1    GL439548    EFN67103.1    CCAG010011418    CCAG010011419    APGK01029540    KB740735    KB631642    ENN79188.1    ERL84905.1    GFDF01010578    JAV03506.1    AJVK01006674    AJVK01006675    AJVK01006676    KQ982937    KYQ49104.1    GBHO01016134    GBRD01012147    GDHC01011080    JAG27470.1    JAG53677.1    JAQ07549.1    JXJN01010502    JXJN01010503    KQ979701    KYN19661.1    ADTU01018978    GFDF01010579    JAV03505.1    GAPW01001853    JAC11745.1    CH477736    EAT36743.1    GFXV01002649    MBW14454.1    ABLF02030005    ABLF02030006    ABLF02030008    ABLF02030010    ABLF02040732    ABLF02040757    ABLF02040768    ABLF02043927    ABLF02063499    GGMR01013842    MBY26461.1    GGFL01003996    MBW68174.1    GGMS01002619    MBY71822.1    AXCM01002613    AXCM01002614    GGFL01005711    MBW69889.1    GEDC01008971    JAS28327.1    JXUM01073760    JXUM01073761    JXUM01073762    JXUM01073763    KQ562794    KXJ75121.1    ATLV01017170    KE525157    KFB41910.1    DS232078    EDS34120.1    AXCN02001335    AAAB01008847    EAA06830.4    KQ981281    KYN43294.1    GGFJ01006997    MBW56138.1    GL888048    EGI68826.1    ADMH02000148    ETN67604.1    GGFK01009465    MBW42786.1    KK854025    PTY09665.1    EGK96562.1    APCN01001063    CH479205    EDW30831.1    GDHF01016722    JAI35592.1    GAKP01004541    JAC54411.1    JH431912    CH984300    EDX16392.1    OUUW01000003    SPP77836.1    CH379063    EAL32348.3    CM000162    EDX03128.1    CH902622    EDV34366.1    CH954180    EDV47650.1    GBXI01000323    JAD13969.1    AE014298    BT099938    AAF50953.2    ACX36514.1    AFH07509.1    AFH07510.1    AHN59996.1    CH916376    EDV95190.1    CH933810    EDW06921.1    KRF93874.1    CH940651    EDW65257.1    KRF82147.1    GDIQ01228211    GDIP01091607    GDIQ01088752    LRGB01002793    JAK23514.1    JAM12108.1    KZS06325.1   

Proteomes

UP000283053    UP000218220    UP000007151    UP000053240    UP000053268    UP000235965    + More
UP000245037    UP000027135    UP000215335    UP000015103    UP000076502    UP000008237    UP000078542    UP000053825    UP000242457    UP000005203    UP000053097    UP000279307    UP000192223    UP000036403    UP000007266    UP000053105    UP000000311    UP000092444    UP000019118    UP000030742    UP000092462    UP000075809    UP000092460    UP000078492    UP000075880    UP000005205    UP000008820    UP000007819    UP000092443    UP000076408    UP000075920    UP000075883    UP000075881    UP000069940    UP000249989    UP000030765    UP000075900    UP000075885    UP000002320    UP000075886    UP000075903    UP000007062    UP000078541    UP000007755    UP000000673    UP000069272    UP000076407    UP000075840    UP000008744    UP000091820    UP000078200    UP000192221    UP000000304    UP000268350    UP000001819    UP000002282    UP000007801    UP000008711    UP000092445    UP000000803    UP000095301    UP000095300    UP000001070    UP000009192    UP000008792    UP000076858   

PRIDE

Q9VR53   

Pfam

PF00400   WD40        + More
PF16042   DUF4794
PF07687   M20_dimer
PF01546   Peptidase_M20
PF09334   tRNA-synt_1g

Interpro

IPR019775   WD40_repeat_CS        + More
IPR036322   WD40_repeat_dom_sf       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR017986   WD40_repeat_dom       
IPR001680   WD40_repeat       
IPR011650   Peptidase_M20_dimer       
IPR036264   Bact_exopeptidase_dim_dom       
IPR002933   Peptidase_M20       
IPR010159   N-acyl_aa_amidohydrolase       
IPR032011   DUF4794       
IPR001261   ArgE/DapE_CS       
IPR014729   Rossmann-like_a/b/a_fold       
IPR015413   Methionyl/Leucyl_tRNA_Synth       

SUPFAM

SSF50978   SSF50978        + More
SSF55031   SSF55031       

Gene 3D

2.130.10.10     3.40.50.620    

ProteinModelPortal

A0A3S2PGH9   A0A2W1BTC9   A0A2A4K3T6   A0A2H1W9M2   A0A212EX12   A0A194QPE3   + More
A0A194QIX9   A0A2Z5U7M8   A0A2J7RNU1   A0A2J7RNU3   A0A2P8YLS6   A0A2J7RNU2   A0A067R119   A0A232F4N0   T1HWD9   A0A154PGF2   A0A0P4VR09   E2BQZ7   A0A195CU17   A0A023F5V4   A0A0L7QTZ2   A0A2A3EE51   A0A088AS01   A0A0V0G9X0   A0A069DRZ7   A0A1Y1L0Z3   A0A026WM51   A0A1B6ERH5   A0A1W4WGR8   A0A0J7KM37   A0A1B6KXQ2   D6X2C7   A0A0M9AAL1   E2AHK0   A0A1B0GAE8   N6TMD4   A0A1L8DAL1   A0A1B0DLI1   A0A151WMK5   A0A0A9YD58   A0A1B0B9P1   A0A195E3L4   A0A182JKY7   A0A158NKW7   A0A1L8DAV0   A0A023ERD7   Q16QR0   A0A2H8TJZ8   J9JTS2   A0A2S2PAH2   A0A2M4CS55   A0A2S2Q3M4   A0A1A9XKN4   A0A182XY71   A0A182VVE9   A0A182LU38   A0A2M4CX96   A0A1B6DRM6   A0A1S4FSU1   A0A182KFY9   A0A182GM34   A0A084VVB6   A0A182RYS3   A0A182PU07   B0WSY7   A0A182QEA9   A0A182USZ9   Q7PRP8   A0A195FTS7   A0A2M4BTQ5   F4WAE3   W5JWV6   A0A182FID2   A0A2M4APR6   A0A2R7VUR6   A0A182X7H2   F5HJU6   A0A182I9W8   B4H2Z9   A0A1A9X3A6   A0A0K8V9Q8   A0A1A9UE49   A0A034WFR4   T1JKQ2   A0A1W4VWR8   B4NUV7   A0A3B0JWV7   Q29JF3   B4PZK0   B3MRG1   B3NY65   A0A0A1XRP9   A0A1B0A2Y0   Q9VR53   A0A1I8N6U4   A0A1I8Q193   B4JWR4   B4L2V4   B4M382   A0A0N8AZA6  

PDB

4PSX     E-value=1.99465e-06,     Score=123

KEGG

101736941    K11805 WD repeat-containing protein 68 | (RefSeq) DDB1- and CUL4-associated factor 7

GO

GO:0005634   GO:0008237   GO:0005737   GO:0006520   GO:0004046   GO:0004812   GO:0005524   GO:0006418   GO:0048627   GO:0048747   GO:0045927   GO:0035331   GO:0007517   GO:0005515   GO:0016485   GO:0043085   GO:0004319   GO:0004320   GO:0016295   GO:0016296  

Length:

350

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00154

Exp number, first 60 AAs:

0.00051

Total prob of N-in:

0.00895

outside

1  -  350

 

 

Pi

47.37018

Theta

73.925844

Tajima's D

-1.228133

CLR

0.612149

CSRT

0.100844957752112

Interpretation

Uncertain