Gene

KWMTBOMO06975  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA010495

Annotation

PREDICTED:_chromatin_assembly_factor_1_subunit_B_[Papilio_machaon]

Location

Bomo_Chr12(+):941672-946123      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.236

CDS

ATGAAGTTTGCGATACCAGAAATATCCTGGCATAATCGTGATCCAGTTCTAAGTGTAGATTTTCAGCCCAAAGCGGAACCGAATGACCCGTTACGACTCGCCAGCGGTGGAACAGATTCACACGTTTTGATCTGGTATTTATCAACCACGGAGACGGGTTCAGTTCATCTTGAAGTAGCAGCTGATTTAACAAGGCATCAGAAAGCTGTGAATGTAGTGAGATGGTCACCTAATGGACAGTTATTGGCTTCTGGGGATGATGAGTCCATCATATTCATTTGGAAGCAGAAACTGGAAGAACTTTCTCCGGCAACTGAGGGTGAGGAGCAATATAAAGAAACTTGGGTTGTTTATAAGACTCTTCGAGGGCACATGGAAGATGTCCTTGACATATCCTGGAGTATGGACGGCTTACAGTTGGCTTCTGGCTCAGTAGATAACAAATTAATTGTTTGGGACATACACAGAGCTCGTTACACTACTATACTTAGTGACCACAAAGGGTTTGTGCAAGGTGTCTGTTGGGATCCTAAAGGACAGTACATAACATCTACGAGTACAGACAGAGTGTTTCGAGCATTTGATGTATCTACCAAGAAGGTTGTATCAAGAAGCAGCAAAGCATCTCTCCCGTTCCCCACTGACCATCCTCTCCACGGCTCCAGACAACGGCTATACCATGATGACACACTCCAAACATATTACCGACGACTGCAGTTCAGCCCGGACGGCCTATACATTGCAGTTCCAGCAGGGAGAGTGGAGCCAGAGGGAAAACCTGATGTAAAACCAATCAATGCCGTGTATATCTATACGAGATATTGTTTGAAAATCCCAGTGTGTGTGGTACCATGCGGCGAGCCAGCCCTGGTGACCCGCTGGTCGCCGATAGGGTTCCGCCCCCGCGCCGCCGGGCCCGCGCCTCGCCTGCCGTCCCCGAGCGGAGCCCGGCACGTGCTGGCCGTGGGGACCAGGCGCTCCGTGTTGGTGTACGACACACAACAGAAGACTCCCATAGCCATAGTTGCCAATGTACATTACACTAGATTAACAGATCTAACATGGTCCAACAATGGTCGTATACTGGTGGCCTCCAGCACTGACGGCTTCTGCTCCATTATCACATTCAACAATGAGGAACTCGGCGAGCCACTTCCTCTAGAACCAAACACTGAGAATAAACCAGAACCAATGGAAACGCAAGACGAAAAGCCTGCAGCTCAAACAGAAGCGCCGAAACCGACAAAAATAGATTCGTTCATAAAATTCAAAGCGCCAGAAAAATCGCCCAAAAATTTAAAAACACAAACAGAAATCAAAACGCCCGTCAAAATAGACTTTTTAGAGGAAGTCGCCAACCCCTCGTGGTCCGATAACAGTAACAACGAAATTATAAAACATCGAGCGAGCGAACCGATGGACTCCGACGTGACGGTCATAGAAGACAGCGGCGATATAAAACTGGTTTACGAGGAAACTGAAGGCGTCAAGTCGCCGCCTAAAACGCAACAAGCCAACAAACTGGAAATTAAAAGTAAACAAAACACTTCGCCCAAAGACAATCAGTTCTTTAGACAGGCCAAGGTGACAGATGTCAAACAGCCAATAGCGGCAACAGTGTCCAGTCCTAAAGCGCCTCGGAGGGTCAGCTTCGTAACTTTGTCAAGTCCTAAAAATGCTAAAAAGAAATAG

Protein

MKFAIPEISWHNRDPVLSVDFQPKAEPNDPLRLASGGTDSHVLIWYLSTTETGSVHLEVAADLTRHQKAVNVVRWSPNGQLLASGDDESIIFIWKQKLEELSPATEGEEQYKETWVVYKTLRGHMEDVLDISWSMDGLQLASGSVDNKLIVWDIHRARYTTILSDHKGFVQGVCWDPKGQYITSTSTDRVFRAFDVSTKKVVSRSSKASLPFPTDHPLHGSRQRLYHDDTLQTYYRRLQFSPDGLYIAVPAGRVEPEGKPDVKPINAVYIYTRYCLKIPVCVVPCGEPALVTRWSPIGFRPRAAGPAPRLPSPSGARHVLAVGTRRSVLVYDTQQKTPIAIVANVHYTRLTDLTWSNNGRILVASSTDGFCSIITFNNEELGEPLPLEPNTENKPEPMETQDEKPAAQTEAPKPTKIDSFIKFKAPEKSPKNLKTQTEIKTPVKIDFLEEVANPSWSDNSNNEIIKHRASEPMDSDVTVIEDSGDIKLVYEETEGVKSPPKTQQANKLEIKSKQNTSPKDNQFFRQAKVTDVKQPIAATVSSPKAPRRVSFVTLSSPKNAKKK

Uniprot

H9JLU3   A0A2W1BH11   A0A2A4JR17   A0A2H1WFS2   A0A212F202   A0A194QNA1   + More
A0A194QJ32   A0A0L7L8G5   A0A336MIQ7   A0A336M445   A0A1B0DBG9   A0A2A3EDE1   A0A0M8ZPD4   A0A088ANE9   A0A0L7RGD8   B4MIQ2   D6W9X9   A0A154PCS2   A0A232FI28   K7J151   A0A026WMU4   A0A158NXS9   A0A151I429   A0A0J7KRW2   A0A151ITD1   F4WLS8   A0A195FX09   E2C1W7  

Pubmed

19121390    28756777    22118469    26354079    26227816    17994087    + More
18362917    19820115    28648823    20075255    24508170    30249741    21347285    21719571    20798317   

EMBL

BABH01005121    KZ150222    PZC72090.1    NWSH01000849    PCG73862.1    ODYU01008383    + More
SOQ51930.1    AGBW02010785    OWR47751.1    KQ461194    KPJ06834.1    KQ458671    KPJ05522.1    JTDY01002245    KOB71813.1    UFQT01001176    SSX29341.1    UFQT01000530    SSX25025.1    AJVK01029976    KZ288292    PBC29186.1    KQ435944    KOX68197.1    KQ414596    KOC70042.1    CH963719    EDW71991.1    KQ971312    EEZ98093.1    KQ434864    KZC09000.1    NNAY01000180    OXU30243.1    KK107151    QOIP01000003    EZA57248.1    RLU24388.1    ADTU01003493    ADTU01003494    KQ976462    KYM84657.1    LBMM01003848    KMQ93058.1    KQ981015    KYN10274.1    GL888216    EGI64810.1    KQ981204    KYN44973.1    GL452008    EFN78079.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053240    UP000053268    UP000037510    + More
UP000092462    UP000242457    UP000053105    UP000005203    UP000053825    UP000007798    UP000007266    UP000076502    UP000215335    UP000002358    UP000053097    UP000279307    UP000005205    UP000078540    UP000036403    UP000078492    UP000007755    UP000078541    UP000008237   

PRIDE

H9JLU3   

Pfam

PF00400   WD40        + More
PF12894   ANAPC4_WD40

Interpro

IPR017986   WD40_repeat_dom        + More
IPR036322   WD40_repeat_dom_sf       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR001680   WD40_repeat       
IPR019775   WD40_repeat_CS       
IPR001632   Gprotein_B       
IPR024977   Apc4_WD40_dom       

SUPFAM

SSF50978   SSF50978       

Gene 3D

2.130.10.10    

ProteinModelPortal

H9JLU3   A0A2W1BH11   A0A2A4JR17   A0A2H1WFS2   A0A212F202   A0A194QNA1   + More
A0A194QJ32   A0A0L7L8G5   A0A336MIQ7   A0A336M445   A0A1B0DBG9   A0A2A3EDE1   A0A0M8ZPD4   A0A088ANE9   A0A0L7RGD8   B4MIQ2   D6W9X9   A0A154PCS2   A0A232FI28   K7J151   A0A026WMU4   A0A158NXS9   A0A151I429   A0A0J7KRW2   A0A151ITD1   F4WLS8   A0A195FX09   E2C1W7  

PDB

4CY5     E-value=1.13333e-11,     Score=170

KEGG

101741922    K10751 chromatin assembly factor 1 subunit B | (RefSeq) chromatin assembly factor 1 subunit B

GO

GO:0042393   GO:0005634   GO:0033186   GO:0006334   GO:0005515   GO:0005622   GO:0005840   GO:0006412   GO:0006886   GO:0004317   GO:0004319   GO:0004320   GO:0016295   GO:0016296  

Length:

563

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00181

Exp number, first 60 AAs:

0.00057

Total prob of N-in:

0.00085

outside

1  -  563

 

 

Pi

337.163423

Theta

234.164605

Tajima's D

1.385317

CLR

0.000379

CSRT

0.75821208939553

Interpretation

Uncertain