Gene

KWMTBOMO06972  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA010488

Annotation

PREDICTED:_pre-mRNA-splicing_factor_SPF27_[Papilio_polytes]

Location

Bomo_Chr12(-):928791-935611      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.258

CDS

ATGGCAGGAGAAGTTGTCGTAGATGCATTACCATATATAGACCAAGGATATGACGATCCTGGAGTAAGAGAAGCTGCATTGGCCATGGTGGAAGAAGAGTGCAGACGCTATAGACCCACAAAGAACTATCTTGAAAATGCAGGACCAGAACCAAGTTCTGCATTTGAAACTCCTGCTTTACAACGAGAGATGGAAAGAGTGCAACAGAGATTGCCGATGGAACCATTGTCTATGAAGAGGTATGAACTTCCACCCCCTCCAGTCGGAAGAATGAGTGAACCAAGTGCCTGGGCCGAGTCAGTTGACAACTCTCATGCACAGCTGTCACACCAAGCTATCAGAGTTCTCAATTTAGAGTTGCAGTTAGAGTACGGTTCAGAAGCATGGAGATCATACCTCAATACACTTCAAGCATTAGTCACAAGAGCTCAAAACGAACACAACCAGTTACGTAAACAAATAGGCTCTGTGAACTGGGAACGTAAACGCGTACAAACAGCAAGCGGTGCGAGGTTGCGGGCATTGAGGCGACGGTGGGCGCAACTTGTCTCGGACAATTATAGACTTGAAAGAGCCCTACTTCACTTACAACAGGCAAAGGGAGAAGTACCAGTAGAAGAAGGAGAAGAAGCCGATTTGGACATTGTAAAGTTACCTGAAAAACTCAATTCGGAAACAGAGAAGGAAGTGCAAAAGAAAATTGAAGATATGTTTGCGGATTAA

Protein

MAGEVVVDALPYIDQGYDDPGVREAALAMVEEECRRYRPTKNYLENAGPEPSSAFETPALQREMERVQQRLPMEPLSMKRYELPPPPVGRMSEPSAWAESVDNSHAQLSHQAIRVLNLELQLEYGSEAWRSYLNTLQALVTRAQNEHNQLRKQIGSVNWERKRVQTASGARLRALRRRWAQLVSDNYRLERALLHLQQAKGEVPVEEGEEADLDIVKLPEKLNSETEKEVQKKIEDMFAD

Uniprot

H9JLT6   A0A2W1BFT6   A0A2H1WFY7   A0A2A4JPW5   A0A194QTF8   A0A194QJF8   + More
A0A212F208   S4Q0A5   A0A076FHL3   A0A0M8ZYS3   A0A0L7QYH9   A0A154PLY9   A0A0L0CH84   Q16U78   A0A2A3EUZ9   A0A0B4J2N9   A0A067RGW9   B0WA23   A0A182JZB7   E2C704   A0A151JVH2   A0A2M4AYM5   A0A1Q3F3K4   A0A182SYY2   A0A151J691   A0A182NG96   A0A182XLZ7   A0A195BB77   A0A158NIM3   A0A182VCL5   A0A2J7QLQ8   A0A182JHP5   A0A182XVE8   A0A182UFJ1   A0A182LFN1   Q7QBT8   A0A182HTH1   A0A182PEL7   A0A1I8PUC9   A0A182FQ07   A0A151ILY0   A0A2M4AXQ0   W5JER8   A0A0J7KLM0   A0A1B6FQK1   A0A2M4BYV1   A0A182M245   U5ETJ1   A0A2M3ZCQ7   A0A2M4BYU4   A0A182W2M5   A0A1B6KAV1   A0A026WL09   A0A182Q497   E2A9S4   A0A151WQ78   A0A182R759   A0A1B6DPE7   A0A1S3D4Y6   B3M016   B4JEQ7   A0A1I8M2M0   F4WDL9   T1HTR9   A0A0N7Z8I8   A0A224XXK6   A0A023F585   A0A069DQ66   A0A0V0G8N5   A0A0B6XZ98   D6WKN2   A0A2H8TFM7   A0A232EE42   A0A161MQ43   J9K9X3   A0A1Y1NCX3   A0A034VG38   E0VPG5   N6U094   J3JZ00   T1EB99   A0A0M4EGN4   C4WW46   A0A0A9X2Y5   A0A1A9XG49   A0A1B0BEH2   D3TRT2   A0A2L2YG07   A0A1A9Z9K7   A0A1W4X679   A0A1A9UJQ4   A0A0K8VA35   A0A1L8DHP1   A0A0L8IB39   B3P5W1   B4G2B6   A0A1L8DHH4   B4PR85   A0A1A9WY30   V4AVU3  

Pubmed

19121390    28756777    26354079    22118469    23622113    26108605    + More
17510324    24845553    20798317    21347285    25244985    20966253    12364791    14747013    17210077    20920257    23761445    24508170    30249741    17994087    25315136    21719571    27129103    25474469    26334808    18362917    19820115    28648823    28004739    25348373    20566863    23537049    22516182    25401762    20353571    26561354    17550304    23254933   

EMBL

BABH01005119    BABH01005120    KZ150222    PZC72087.1    ODYU01008383    SOQ51927.1    + More
NWSH01000849    PCG73859.1    KQ461194    KPJ06831.1    KQ458671    KPJ05524.1    AGBW02010785    OWR47754.1    GAIX01000128    JAA92432.1    KF803644    AII16886.1    KQ435821    KOX72329.1    KQ414688    KOC63649.1    KQ434948    KZC12464.1    JRES01000409    KNC31601.1    CH477631    EAT38055.1    KZ288185    PBC34891.1    KK852478    KDR23022.1    DS231868    EDS40756.1    GL453255    EFN76276.1    KQ981702    KYN37454.1    GGFK01012377    MBW45698.1    GFDL01012922    JAV22123.1    KQ979869    KYN18737.1    KQ976529    KYM81806.1    ADTU01017000    NEVH01013241    PNF29517.1    AAAB01008859    EAA07483.3    APCN01000528    KQ977085    KYN05890.1    GGFK01012229    MBW45550.1    ADMH02001428    ETN62566.1    LBMM01005671    KMQ91303.1    GECZ01017335    JAS52434.1    GGFJ01009098    MBW58239.1    AXCM01000235    GANO01002759    JAB57112.1    GGFM01005528    MBW26279.1    GGFJ01009099    MBW58240.1    GEBQ01031406    JAT08571.1    KK107159    QOIP01000001    EZA56742.1    RLU27283.1    AXCN02001627    GL437918    EFN69876.1    KQ982850    KYQ49961.1    GEDC01009769    JAS27529.1    CH902617    EDV44206.1    CH916369    EDV93188.1    GL888087    EGI67799.1    ACPB03011663    GDKW01003227    JAI53368.1    GFTR01003627    JAW12799.1    GBBI01002459    JAC16253.1    GBGD01002884    JAC86005.1    GECL01001843    JAP04281.1    HACG01001986    CEK48851.1    KQ971342    EFA03021.1    GFXV01000717    MBW12522.1    NNAY01005655    OXU16598.1    GEMB01002650    JAS00539.1    ABLF02003796    ABLF02009129    GEZM01006507    JAV95743.1    GAKP01018237    JAC40715.1    DS235366    EEB15271.1    APGK01054266    KB741248    KB632305    ENN71957.1    ERL91844.1    BT128481    AEE63438.1    GAMD01000068    JAB01523.1    CP012526    ALC47566.1    AK341845    BAH72116.1    GBHO01032129    JAG11475.1    JXJN01012899    CCAG010014727    EZ424134    ADD20410.1    IAAA01013251    LAA06165.1    GDHF01033524    GDHF01023230    GDHF01016500    JAI18790.1    JAI29084.1    JAI35814.1    GFDF01008177    JAV05907.1    KQ416196    KOF98235.1    CH954182    EDV53361.1    CH479179    EDW23961.1    GFDF01008176    JAV05908.1    CM000160    EDW98449.1    KB200505    ESP01498.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000053268    UP000007151    UP000053105    + More
UP000053825    UP000076502    UP000037069    UP000008820    UP000242457    UP000005203    UP000027135    UP000002320    UP000075881    UP000008237    UP000078541    UP000075901    UP000078492    UP000075884    UP000076407    UP000078540    UP000005205    UP000075903    UP000235965    UP000075880    UP000076408    UP000075902    UP000075882    UP000007062    UP000075840    UP000075885    UP000095300    UP000069272    UP000078542    UP000000673    UP000036403    UP000075883    UP000075920    UP000053097    UP000279307    UP000075886    UP000000311    UP000075809    UP000075900    UP000079169    UP000007801    UP000001070    UP000095301    UP000007755    UP000015103    UP000007266    UP000215335    UP000007819    UP000009046    UP000019118    UP000030742    UP000092553    UP000092443    UP000092460    UP000092444    UP000092445    UP000192223    UP000078200    UP000053454    UP000008711    UP000008744    UP000002282    UP000091820    UP000030746   

PRIDE

H9JLT6   

Pfam

PF05700   BCAS2

Interpro

IPR008409   SPF27       

ProteinModelPortal

H9JLT6   A0A2W1BFT6   A0A2H1WFY7   A0A2A4JPW5   A0A194QTF8   A0A194QJF8   + More
A0A212F208   S4Q0A5   A0A076FHL3   A0A0M8ZYS3   A0A0L7QYH9   A0A154PLY9   A0A0L0CH84   Q16U78   A0A2A3EUZ9   A0A0B4J2N9   A0A067RGW9   B0WA23   A0A182JZB7   E2C704   A0A151JVH2   A0A2M4AYM5   A0A1Q3F3K4   A0A182SYY2   A0A151J691   A0A182NG96   A0A182XLZ7   A0A195BB77   A0A158NIM3   A0A182VCL5   A0A2J7QLQ8   A0A182JHP5   A0A182XVE8   A0A182UFJ1   A0A182LFN1   Q7QBT8   A0A182HTH1   A0A182PEL7   A0A1I8PUC9   A0A182FQ07   A0A151ILY0   A0A2M4AXQ0   W5JER8   A0A0J7KLM0   A0A1B6FQK1   A0A2M4BYV1   A0A182M245   U5ETJ1   A0A2M3ZCQ7   A0A2M4BYU4   A0A182W2M5   A0A1B6KAV1   A0A026WL09   A0A182Q497   E2A9S4   A0A151WQ78   A0A182R759   A0A1B6DPE7   A0A1S3D4Y6   B3M016   B4JEQ7   A0A1I8M2M0   F4WDL9   T1HTR9   A0A0N7Z8I8   A0A224XXK6   A0A023F585   A0A069DQ66   A0A0V0G8N5   A0A0B6XZ98   D6WKN2   A0A2H8TFM7   A0A232EE42   A0A161MQ43   J9K9X3   A0A1Y1NCX3   A0A034VG38   E0VPG5   N6U094   J3JZ00   T1EB99   A0A0M4EGN4   C4WW46   A0A0A9X2Y5   A0A1A9XG49   A0A1B0BEH2   D3TRT2   A0A2L2YG07   A0A1A9Z9K7   A0A1W4X679   A0A1A9UJQ4   A0A0K8VA35   A0A1L8DHP1   A0A0L8IB39   B3P5W1   B4G2B6   A0A1L8DHH4   B4PR85   A0A1A9WY30   V4AVU3  

PDB

6QDV     E-value=3.41698e-45,     Score=455

KEGG

101741443    K12861 pre-mRNA-splicing factor SPF27 | (RefSeq) pre-mRNA-splicing factor SPF27

PATHWAY

03040    Spliceosome - Bombyx mori (domestic silkworm)

GO

GO:0006397   GO:0000974   GO:0016787   GO:0043565   GO:0003677   GO:0006886   GO:0004317   GO:0004319   GO:0004320   GO:0016295   GO:0016296  

PANTHER

PTHR13296  

Length:

240

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02414

outside

1  -  240

 

 

Pi

208.970449

Theta

172.35255

Tajima's D

0.621286

CLR

0.168379

CSRT

0.547972601369932

Interpretation

Uncertain