SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO06950
Pre Gene Modal
BGIBMGA010304
Annotation
PREDICTED:_uncharacterized_protein_LOC101744654_[Bombyx_mori]
Location
Bomo_Chr12(+):220226-230145      View in EpiBrowser
Location in the cell
PlasmaMembrane   Reliability : 3.593
 

Sequence

CDS
ATGTCCCTTCAGAACAAAGTGACACTTTACAAAACTTACATAAGGCCCGTTATGACTTACGCGAGTGTGGTGTTCGCTCGCGTGGCCCACACACACAGACACTCTCCTATCCCTACAATTCCGCGGAACGTCGACCTACACGACGACCTGGGCTTCGAATCGATCCGCAAACACTTAAAGTCAGTGTCGGAACGTTACTTCGATAAGGCTATGCGTCATGATAATTGCCTTATCGTTGCCGCCGCTGACTACTCCCCGAATCCTGATCACGTAGGAGCAAGACACCGTCCTCGCCCTAGACACGTCCTTAAGAAATCAATTTCAGATGAGCAGCTGCTGCTGGTTGTCCTGTGCTGTGTGGGGCTGTCTGCGCAAGTACAATTGCCAGGGTGTCCCCCGCCACCGGCTCAATGCTCTTACTCGGAAGTCGTGGGGAATATGACACACGCGTATACAGTTAGAGGAATCAGGCTTGTCGTCTTCGTGCGTCCGGGTACAGATTTGAGATATTATTGTTTTAACTCGAACTTGACTATAGACGACCCGTCGCTACCCAAGTTCCGAGAGTTATCAGTTTACGACAAGATGCTTCGACTGACGGAGTTGTACCGGCTTCCCGCCCAAATGTTTTCAAGTCCCAGTTTGAGCGCTATCGTCATCAGCGAGTGCCACGTGAACTCGTTGCCCGCCGACCTGGCAGCCGGCGCAGTGAATTTGACAGTTCTAGACGTTTCGAACAACTATATCGAGAAATTAAACCATTTGTTCGAAGCCGAGCAGATGTTGCATCTTCAGTATCTGGACGTGTCAGTGAACTTGGTGTCGGCGATGTCGTTGGGCCTGCTGTCTCGGCTGCAGTCCCTGCTCGCGCTGAGGGTGGACGGCGCTGACCAGGCTCACCGGTGCCGAGTAAACTGGTCGCACTATGGAGGTGGTGATGTCATTGAAATTACAGAGATATTTCCGTGGCCGGTGTTGTCGTCCCTGACCGAGCTCTCACTGCGATACAGCGACGCCCGCGCGATCTGTCCGGAGTGGGGGGAGGCCATGCCCTCGCTACAGCTACTCAACCTCACTCACACACCCATAACTGCTCTTCAGTACAGCGACATTGAACTGTTGAGATACAAAAATTGGGAAGTAGATTTGCGCAGGAACACAGACTTAGCCATTATGTACAGCAGAGATGACTTTGAGAAAGTTATGTTGGACCAGACGATGGACCTCAGGTACAACCGACTGTCCACAGTTGATGAAGAGGTATTACAGAAAATGTTTGGCTCCAGTAAAGTGGAGTACCATCTAGCGGGGAACCCCATCCCGTGTCTGTGCAACAACAGCGCCTTCGTCGTCGCTCTGCAGCACCACCAGCACCAGGTCAAGGATTACCGAGACCTGTCCTGTATTGGCGGAGGTTCGATCGACCAGGCCAACATGCGGGCGATCTGCTTCTACGAACGTCTGCCGGTGTACGCGGGCGTGGCTGCATCACTCTGTTTCCTGCTCATCTTAATACTGGTAGTGTTGTACTACCGGTACCGGAACGAGATCCTCGTGATCATGTACTCATCGGGCTGGTTTTCGTGCTGCCTGATTGAGGACGAGCTAGACAAGGACAAAAGATACGACGTGTTCATATCGTTCGCTTACGGCGACAGTTCATTCGTGTCGGACACGCTGCTCCCGCGCCTAGAGGGCCCGCCGAACGAGTTCAGCGCGTGCGTGCACTACAGGGACTGGGTGCCCGGCAACTGGGTCCCGGCGCTCATCGCGCACTCGGTGGCGCAGTCGCGGCGAACGATCATCGTGCTCTCCAAGAACTTCCTGTCGTCGGTGTGGGCCCTGCTGGAGTTCCGGACGGCTCACGTCCAGGCGCTGGAAGATGGCCGAGTTCGGCTCATTGTCATCCTCCTCGATGACGTTACTAACGACGCCAGGATCGACGACGAGCTGAGGGCATATCTCTCCACGAACACGTTCATCAGGTGGGGAGACGCCTTGTTTTGGAACAAGCTCTTATACGCGCTGCCTCACAGGAAGCGCACTGCCGGGCTGCACACAGTGAACAGAGCTGACGGCGAGGAAGTCATGCAGAGGATGAGAGAAGACGATCCACCGATTGGACTGCGGCAAGATATGCCACTAGAGTTCTTTAGTTTGCCTGATACACCAGCGAATGCTGAATTATAG
Protein
MSLQNKVTLYKTYIRPVMTYASVVFARVAHTHRHSPIPTIPRNVDLHDDLGFESIRKHLKSVSERYFDKAMRHDNCLIVAAADYSPNPDHVGARHRPRPRHVLKKSISDEQLLLVVLCCVGLSAQVQLPGCPPPPAQCSYSEVVGNMTHAYTVRGIRLVVFVRPGTDLRYYCFNSNLTIDDPSLPKFRELSVYDKMLRLTELYRLPAQMFSSPSLSAIVISECHVNSLPADLAAGAVNLTVLDVSNNYIEKLNHLFEAEQMLHLQYLDVSVNLVSAMSLGLLSRLQSLLALRVDGADQAHRCRVNWSHYGGGDVIEITEIFPWPVLSSLTELSLRYSDARAICPEWGEAMPSLQLLNLTHTPITALQYSDIELLRYKNWEVDLRRNTDLAIMYSRDDFEKVMLDQTMDLRYNRLSTVDEEVLQKMFGSSKVEYHLAGNPIPCLCNNSAFVVALQHHQHQVKDYRDLSCIGGGSIDQANMRAICFYERLPVYAGVAASLCFLLILILVVLYYRYRNEILVIMYSSGWFSCCLIEDELDKDKRYDVFISFAYGDSSFVSDTLLPRLEGPPNEFSACVHYRDWVPGNWVPALIAHSVAQSRRTIIVLSKNFLSSVWALLEFRTAHVQALEDGRVRLIVILLDDVTNDARIDDELRAYLSTNTFIRWGDALFWNKLLYALPHRKRTAGLHTVNRADGEEVMQRMREDDPPIGLRQDMPLEFFSLPDTPANAEL

Summary

Uniprot
H9JLA3   A0A084WPQ1  
Pubmed
19121390    24438588   
EMBL
BABH01038777    ATLV01025119    KE525369    KFB52195.1   
Proteomes
UP000005204    UP000030765   
PRIDE
H9JLA3   
Pfam
PF01582   TIR        + More
PF13855   LRR_8
PF12799   LRR_4
Interpro
IPR035897   Toll_tir_struct_dom_sf        + More
IPR032675   LRR_dom_sf       
IPR001611   Leu-rich_rpt       
IPR000157   TIR_dom       
IPR003591   Leu-rich_rpt_typical-subtyp       
IPR000372   LRRNT       
IPR025875   Leu-rich_rpt_4       
SUPFAM
SSF52200   SSF52200       
Gene 3D
3.40.50.10140     3.80.10.10    
ProteinModelPortal
H9JLA3   A0A084WPQ1  
PDB
1O77     E-value=1.57331e-14,     Score=196

Ontologies

KEGG
101744654    K18809 protein toll | (RefSeq) uncharacterized LOC101744654
PATHWAY
04624    Toll and Imd signaling pathway - Bombyx mori (domestic silkworm)
GO
GO:0007165   GO:0016021   GO:0005515   GO:0016192   GO:0005484   GO:0006886   GO:0004317   GO:0004319   GO:0004320   GO:0016295   GO:0016296  

Topology

Length:
729
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
25.5579
Exp number, first 60 AAs:
1.72775
Total prob of N-in:
0.11290
outside
1  -  488
TMhelix
489  -  511
inside
512  -  729
 
 

Population Genetic Test Statistics

Pi
233.537427
Theta
197.875307
Tajima's D
0.02557
CLR
0
CSRT
0.375181240937953
Interpretation
Uncertain
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