Silkworm Genome Informatics Database

Gene

KWMTBOMO06936

Pre Gene Modal

BGIBMGA001742

Annotation

PREDICTED:_syntaxin-1B-like_[Papilio_polytes]

Location

Bomo_Chr12(-):65315-66275 View in EpiBrowser

Location in the cell

Extracellular Reliability : 1.697

CDS

ATGATGACCAACCTCGCGATATCCGACGAGGAGTGTCAGAGCTTGCTGGACTCGAACAACATCTCGCTGTTTGTCGACAATGTGCGCGCGGAGACGGCGGCGGCGCGGCTGGAGCTGCGCGCAGTGGAGGCGCGGCGCGAGGAGCTGGCGCGGGTCGAGGCGGCGCTGCGGGAGGTGCGCGAGCTGTTCCAGCAGCTGGCCGCGCTCGTGGCGGCGCAGCAGGACCAGATCGATAGCGTCGAGTACTACGCGCTGCAGGCCACCGAGCACGTCGAGTGCGGCGGCCAGCAACTCCTCAAGGGCACCGTCACCAGGACCAAGGCCAGAAAGAAAAAGATGAGTCTGTTGCTGTGTCTGGCGATCGGCTTCCTTATAGTACTGCTGGTCCTCTTGCTGACGTAG

Protein

MMTNLAISDEECQSLLDSNNISLFVDNVRAETAAARLELRAVEARREELARVEAALREVRELFQQLAALVAAQQDQIDSVEYYALQATEHVECGGQQLLKGTVTRTKARKKKMSLLLCLAIGFLIVLLVLLLT

Similarity

Belongs to the syntaxin family.

Uniprot

H9IWV9 A0A2H1VKV1 A0A2W1BIY8 A0A2A4J465 A0A212F225 K7IPL7 + More
A0A1B6CDC8 A0A1B6BY23 A0A1B6DP27

Pubmed

19121390 28756777 22118469 20075255

EMBL

BABH01021014 BABH01021015 ODYU01003114 SOQ41460.1 KZ150059 PZC74261.1 + More
NWSH01003340 PCG66516.1 AGBW02010785 OWR47779.1 GEDC01025880 JAS11418.1 GEDC01031125 JAS06173.1 GEDC01009877 JAS27421.1

Proteomes

UP000005204 UP000218220 UP000007151 UP000002358

PRIDE

H9IWV9

Pfam

PF00804 Syntaxin + More
PF05739 SNARE

Interpro

IPR000727   T_SNARE_dom        + More
IPR006011   Syntaxin_N
IPR006012   Syntaxin/epimorphin_CS
IPR010989   SNARE
IPR028669   STX1

SUPFAM

SSF47661 SSF47661

ProteinModelPortal

H9IWV9 A0A2H1VKV1 A0A2W1BIY8 A0A2A4J465 A0A212F225 K7IPL7 + More
A0A1B6CDC8 A0A1B6BY23 A0A1B6DP27

KEGG

101744018 no KO assigned | (RefSeq) syntaxin-1A

GO

GO:0005484 GO:0005623 GO:0016192 GO:0016020 GO:0006886 GO:0016021 GO:0030154 GO:0007340 GO:0000149 GO:0017157 GO:0005515 GO:0004317 GO:0004319 GO:0004320 GO:0016295 GO:0016296

PANTHER

PTHR19957:SF84

Length:

133

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

18.94472

Exp number, first 60 AAs:

0

Total prob of N-in:

0.98585

inside

1 - 112

TMhelix

113 - 132

outside

133 - 133

Pi

164.568203

Theta

65.533459

Tajima's D

0.278836

CLR

0

CSRT

0.450677466126694

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics