Gene

KWMTBOMO06935

Pre Gene Modal

BGIBMGA013961

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC106709759_[Papilio_machaon]

Location

Bomo_Chr12(+):29256-33109      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.063

CDS

ATGGAATACAAAGTCCGAATTGCTAGGGCTGCAGTCAAATATTCCAATCTGGGGAGGGGTCAAGCTGCCACTCAAGAATGCCTGGCAACGGCATCCCTGGATGAATTTTCCATCGCGCTACTGCAAGAACCTTATGTTGGAAATAAAGGGATACTATCAACTAGAAACAGGATCATACAGGATAAAGGGGACAAGAATAATCCTGTCAAATCTGCCATTGTGATATTCGACAGAAGTCTGGTAGTAATTGAAAATAATTTACTCATAGATCGTAACATAGTAGCTGTTACGATAGATACACAGGGACATAGAATCGGGTGCATCTCAGTGTACTGGGAGGATTACGTGAACGTGGACACATATCTAAACAAACTGCAATACGTAATCAACAATCTAAAAACGGACACTTATATAGTTGGTGGTGATGTAAACGCTCGTAGCCAGTGGTGGGGATGCCCCAACGACGATTTAAGAGGAGCGGCTATCGCCGTTTTCTTAGCCCAGAATGATCTCCAAATACTAAACAAAGGAAACACCCCTACATTTTGGACTGTCAGACAAAACAGGCTGTACACAAGTATAATAGATATAACGGCATGCAGTGACGGACTTCTCAACTCAATATCAGATTGGAAAGTAGATGAGAATCTAATCACCACCTCCGATCATCGCTCAATCACGTTCAGCGTCGACCTTACCGGGAACAGAGGTTCTCAGAAAGGAAATCTTACCACTACAAAGATATACAATACTAATAAAGCAAACTGGCCTAAATTCAAAAATAAGCTACTGGAGCAATTCTCTGAACGAAATATCACAGTTGAAACCATCGCCTCAAAAACTGACAACGAAGAGTTCAACAAAATGGTAGAGGACTACGCGGGATGCATTGCGGTAGCCTGTGATTCCGCGATTCCTCTGATTGACCATAGTAAAAATCAATGTAGGCTATCCTGGTGGACCAAAGAACTAACCGAACTTAAAAATGAGGTTAAAAGAATCAGAAGCAAGATTAGGAAGGCAAACCCTAGAAGAAGGCCGCTTCTGATAAAAGATTATCAAGAAAGGTTAAAAGAATATAAACACACAATAATCATAACGAGGACCACCAGTTGGAAAGAATATACATCACGACAGAAGAGAGAATCGATGTGGGATAAATTCTACCGCATTATACGTACTAATAATAGAAGCAGAGATGAGGTAATGCTCAAGAAAGGGAATGACGTCCTCGACCCCCTCAAATCCGCAGAACTACTAGCTGATACATTCTATCCTAAGGACAATAAAGATATCGAAAACGAAGAACATCACCGCATACGAGAGGAGATAGCTGCATGGAGGAAGAAAATAATCGAAGAGAAGGACCCAGAATTTAAAGAAAAGCCGTTCACACCGAAAGAAATACAAATGATCTTGGACTTTGCCATGGACACTCAAAACTTCCCCAGTATTATCGAGGACGACAGTGCTAGAGAAGCGTTCCTGAAATTCGCTATAAACAGTATAAAAATTGCCAACAACAGAAATAATAGTATAATGAAATACGCTATAGATTAA

Protein

MEYKVRIARAAVKYSNLGRGQAATQECLATASLDEFSIALLQEPYVGNKGILSTRNRIIQDKGDKNNPVKSAIVIFDRSLVVIENNLLIDRNIVAVTIDTQGHRIGCISVYWEDYVNVDTYLNKLQYVINNLKTDTYIVGGDVNARSQWWGCPNDDLRGAAIAVFLAQNDLQILNKGNTPTFWTVRQNRLYTSIIDITACSDGLLNSISDWKVDENLITTSDHRSITFSVDLTGNRGSQKGNLTTTKIYNTNKANWPKFKNKLLEQFSERNITVETIASKTDNEEFNKMVEDYAGCIAVACDSAIPLIDHSKNQCRLSWWTKELTELKNEVKRIRSKIRKANPRRRPLLIKDYQERLKEYKHTIIITRTTSWKEYTSRQKRESMWDKFYRIIRTNNRSRDEVMLKKGNDVLDPLKSAELLADTFYPKDNKDIENEEHHRIREEIAAWRKKIIEEKDPEFKEKPFTPKEIQMILDFAMDTQNFPSIIEDDSAREAFLKFAINSIKIANNRNNSIMKYAID

Uniprot

Q9BLI0   Q9BLI5   Q9BLI4   Q9BLI3   A0A194QZG8   Q93139   + More
A0A212F890   K7JMI9   A0A1B6FCA5   A0A1Y3BRS2   K7JAI1   A0A0J7KIV1   K7JWL9   A0A2R7WW78   A0A2R7WHA3   J9M8T8   A0A142LX24   T1HJW2   A0A023EX80   A0A147BCI0   A0A0J7K3F1   A0A0J7MWN5   A0A224X653   A0A1I8IBT3   A0A1S3DM51   A0A0C9QD64   J9LES5   A0A224XAL8   A0A087TI44   A0A1B6D5E4   T1I8Q1   A0A2R7WYT6   A0A1B6E1N0   A0A1B6DRM7   A0A2R7WZM4   J9KPX6   X1XKA4   A0A0K8TL06   A0A0K8TLH8   A0A1S3D5J4   A0A0J7KTH2   J9KRH3   J9JXR0   O18558   J9L0V3   V5GNF6   A0A087T6T3   A0A087TAD8   B7QBV7   A0A0K1IK29   A0A1S4EPA1   U5EW32   A0A1Y1MFF8   A0A0J7N8F6   J9LNF5   A0A0J7KF40   A0A1I8FVG9   O46184   X1X2B5   J9KMZ9  

Pubmed

11319268    26354079    7623845    15247245    22118469    20075255    + More
25527032    25474469    29652888    26392545    26369729    28004739    9364772   

EMBL

AB046673    BAB21516.1    AB046668    BAB21511.1    AB046669    BAB21512.1    + More
AB046670    BAB21513.1    KQ461108    KPJ08991.1    D38414    BAA07467.1    AGBW02009775    OWR49941.1    AAZX01008070    GECZ01021958    JAS47811.1    MUJZ01008278    OTF82483.1    AAZX01006426    LBMM01006940    KMQ90177.1    AAZX01018244    KK855758    PTY23794.1    KK854804    PTY18889.1    ABLF02007471    ABLF02007472    KU543672    AMS38350.1    ACPB03028300    GBBI01004920    JAC13792.1    GEGO01007232    JAR88172.1    LBMM01015025    KMQ84953.1    LBMM01015285    KMQ84870.1    GFTR01008469    JAW07957.1    GBYB01012318    JAG82085.1    ABLF02008889    ABLF02041820    GFTR01008452    JAW07974.1    KK115320    KFM64783.1    GEDC01016405    JAS20893.1    ACPB03026099    PTY23785.1    GEDC01005462    JAS31836.1    GEDC01008950    JAS28348.1    KK856129    PTY24962.1    ABLF02019936    ABLF02057951    ABLF02011057    ABLF02048793    GDAI01002584    JAI15019.1    GDAI01002592    JAI15011.1    LBMM01003366    KMQ93606.1    ABLF02020082    ABLF02020086    ABLF02020092    ABLF02014981    U87543    AAB65093.1    ABLF02012458    ABLF02012459    GALX01005354    JAB63112.1    KK113699    KFM60822.1    KK114278    KFM62077.1    ABJB010425648    DS903648    EEC16329.1    KP771711    AKU04648.1    GANO01003141    JAB56730.1    GEZM01035254    JAV83320.1    LBMM01008384    KMQ88925.1    ABLF02006133    LBMM01008422    KMQ88894.1    U73803    AAB92393.1    ABLF02019402    ABLF02059310    ABLF02039177   

Proteomes

UP000053240    UP000007151    UP000002358    UP000036403    UP000007819    UP000015103    + More
UP000095280    UP000079169    UP000054359    UP000001555   

PRIDE

Q9BLI5    Q9BLI4    Q9BLI3    Q93139   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF00075   RNase_H
PF00004   AAA
PF17862   AAA_lid_3
PF16725   Nucleolin_bd
PF16012   DUF4780
PF05585   DUF1758
PF03564   DUF1759

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR012337   RNaseH-like_sf       
IPR036397   RNaseH_sf       
IPR002156   RNaseH_domain       
IPR036875   Znf_CCHC_sf       
IPR001878   Znf_CCHC       
IPR003959   ATPase_AAA_core       
IPR027417   P-loop_NTPase       
IPR003960   ATPase_AAA_CS       
IPR031996   NVL2_nucleolin-bd       
IPR041569   AAA_lid_3       
IPR003593   AAA+_ATPase       
IPR038100   NLV2_N_sf       
IPR031961   DUF4780       
IPR005312   DUF1759       
IPR008737   Peptidase_asp_put       

SUPFAM

SSF56219   SSF56219        + More
SSF53098   SSF53098       
SSF57756   SSF57756       
SSF52540   SSF52540       

Gene 3D

3.60.10.10     3.30.420.10     1.10.10.2010    

ProteinModelPortal

Q9BLI0   Q9BLI5   Q9BLI4   Q9BLI3   A0A194QZG8   Q93139   + More
A0A212F890   K7JMI9   A0A1B6FCA5   A0A1Y3BRS2   K7JAI1   A0A0J7KIV1   K7JWL9   A0A2R7WW78   A0A2R7WHA3   J9M8T8   A0A142LX24   T1HJW2   A0A023EX80   A0A147BCI0   A0A0J7K3F1   A0A0J7MWN5   A0A224X653   A0A1I8IBT3   A0A1S3DM51   A0A0C9QD64   J9LES5   A0A224XAL8   A0A087TI44   A0A1B6D5E4   T1I8Q1   A0A2R7WYT6   A0A1B6E1N0   A0A1B6DRM7   A0A2R7WZM4   J9KPX6   X1XKA4   A0A0K8TL06   A0A0K8TLH8   A0A1S3D5J4   A0A0J7KTH2   J9KRH3   J9JXR0   O18558   J9L0V3   V5GNF6   A0A087T6T3   A0A087TAD8   B7QBV7   A0A0K1IK29   A0A1S4EPA1   U5EW32   A0A1Y1MFF8   A0A0J7N8F6   J9LNF5   A0A0J7KF40   A0A1I8FVG9   O46184   X1X2B5   J9KMZ9  

PDB

1WDU     E-value=7.09301e-36,     Score=379

KEGG

105841336    no KO assigned | (RefSeq) uncharacterized LOC105841336

GO

GO:0004523   GO:0003676   GO:0016021   GO:0008270   GO:0003964   GO:0004519   GO:0005524  

Length:

519

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00304

Exp number, first 60 AAs:

0.00043

Total prob of N-in:

0.01143

outside

1  -  519

 

 

Pi

5.700757

Theta

152.135955

Tajima's D

-1.554823

CLR

1295.167348

CSRT

0.055597220138993

Interpretation

Uncertain