Gene

KWMTBOMO06927  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA004666

Annotation

small_GTP-binding_protein_Rab10_[Bombyx_mori]

Location

Bomo_Chr11(+):20266868-20270561      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.924

CDS

ATGGCCAAAAAAACATACGACTTGTTATTCAAACTGCTTCTCATCGGTGACTCCGGAGTTGGAAAAACGTGCATATTGTTTAGGTTCTCAGATAACCACTTCACAACGACTTTTATTTCGACGATAGGTATCGACTTCAAAATAAAGACAGTGGAATTAAGGGGTAAGAAAATAAAGCTCCAGATATGGGACACTGCTGGGCAGGAGCGTTTCCACACCATCACGACGTCGTATTACCGCGGCGCTATGGGCATCATGCTCGTATACGACATAACAAATGAAAAAACATTTGATGATATCGTTAAATGGTTACGAAATATAGACGAGCATGCAAACGAGGATGTGGAAAAGATGATACTTGGCAATAAATGTGATATGGAGGAGAAACGTGTTGTCAGCAAGGAGCGCGGTGAAGCAATAGCCCGCGAGCACGGCATCCGCTTCATGGAGACGTCGGCTAAAGCGAACATAAATATAGACAGAGCTTTCTCGGAACTAGCGGAGGCTATACTCGACAAGACGGCGGGGCGCGAGGCAGACGCCGACCACTCCCGCATCGCGGTCGAGCGCCGCCCCTCCCGCGCCCCGCCCTCGCGCGCCTGCTGCACATAG

Protein

MAKKTYDLLFKLLLIGDSGVGKTCILFRFSDNHFTTTFISTIGIDFKIKTVELRGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKTFDDIVKWLRNIDEHANEDVEKMILGNKCDMEEKRVVSKERGEAIAREHGIRFMETSAKANINIDRAFSELAEAILDKTAGREADADHSRIAVERRPSRAPPSRACCT

Uniprot

Q0N2S2   A0A2A4JZU3   A0A2H1W7T4   A0A194QPG3   A0A2W1BZL4   A0A212FLX1   + More
A0A194Q9J9   A0A1A9Y8M3   A0A1A9UHY9   A0A1B0C3V9   A0A1A9ZBC2   D3TNT5   A0A1A9W935   A0A0L0C293   A0A1W4XUG1   A0A026WQJ3   F4W459   A0A195B3F1   A0A195ETC1   A0A158NF30   A0A151X1W9   A0A1Y1N6E8   B4NCN8   A0A154PCA5   B4M9Y7   A0A195CLK5   E2AT08   B4L7W8   B4PY14   B4I654   B3NWH1   O15971   E9I9V7   A0A067R747   A0A3B0K0F3   A0A0C9RTU9   A0A2J7PJS8   D6WHE1   A0A310STY6   A0A0N0U6J3   A0A087ZVR2   A0A1I8QCX8   B4JKA5   A0A1I8NAV0   A0A2A3EAQ6   A0A0M5J8A4   A0A034WV28   W8AGQ9   B5DN66   A0A1W4VG45   E2B6P6   A0A0T6AXI3   A0A0K8UJI2   A0A0K8TNH4   A0A1B6M051   A0A1B6F8F5   A0A023EJH6   A0A1Q3FWN5   A0A0L7QSX5   U5EZM3   Q17J36   A0A0J7L967   B3MQI0   A0A182FIL5   A0A1L8EH58   A0A1J1J4L1   A0A1B0CFI1   A0A1L8DVH3   K7INY9   A0A232F6K3   A0A336MMZ4   A0A0B4UBW3   A0A182NAD2   A0A084WPI3   A0A182JBA7   A0A2M4C024   A0A182QHP3   N6U250   A0A2M3ZJ48   W5JMM4   A0A182X7G4   A0A182V6E8   A0A182U510   A0A182LDM8   Q7QEG1   A0A182I9X5   A0A0A9WQ73   A0A2M4AQS5   T1D4Q7   A0A182M537   A0A1J1HNH7   A0A0V0G7B7   A0A023FAU6   A0A069DPZ5   A0A0P4VUC0   R4G8M2   A0A3R7M456   A0A0P4W546   T1DF43   E9HIB2  

Pubmed

19121390    26354079    28756777    22118469    20353571    26108605    + More
24508170    30249741    21719571    21347285    28004739    17994087    20798317    17550304    9074639    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    21282665    24845553    18362917    19820115    25315136    25348373    24495485    15632085    26369729    24945155    26483478    17510324    20075255    28648823    25542378    24438588    23537049    20920257    23761445    20966253    12364791    14747013    17210077    25401762    26823975    24330624    25474469    26334808    27129103    21292972   

EMBL

BABH01039391    DQ646409    ABH10799.1    NWSH01000369    PCG76930.1    ODYU01006893    + More
SOQ49149.1    KQ461185    KPJ07423.1    KZ149906    PZC78300.1    AGBW02007696    OWR54699.1    KQ459252    KPJ02192.1    JXJN01025121    CCAG010013941    EZ423087    ADD19363.1    JRES01000984    KNC26473.1    KK107131    QOIP01000012    EZA58208.1    RLU16268.1    GL887491    EGI71055.1    KQ976625    KYM79016.1    KQ981979    KYN31483.1    ADTU01001500    KQ982585    KYQ54285.1    GEZM01011831    GEZM01011830    JAV93421.1    CH964239    EDW82597.1    KQ434870    KZC09525.1    CH940655    EDW66046.1    KQ977642    KYN00954.1    GL442439    EFN63443.1    CH933814    EDW05543.1    CM000162    EDX02986.1    CH480823    EDW56260.1    CH954180    EDV46791.1    AE014298    AY060425    AB006189    AAF50924.1    AAL25464.1    BAA21744.1    GL761846    EFZ22660.1    KK852833    KDR15303.1    OUUW01000003    SPP78491.1    GBYB01012160    JAG81927.1    NEVH01024946    PNF16559.1    KQ971321    EFA00103.1    KQ760208    OAD61379.1    KQ435727    KOX78078.1    CH916370    EDW00008.1    KZ288304    PBC28798.1    CP012528    ALC49381.1    GAKP01001324    JAC57628.1    GAMC01019002    GAMC01019000    JAB87555.1    CH379064    EDY72873.1    GL446000    EFN88630.1    LJIG01022608    KRT79659.1    GDHF01025462    JAI26852.1    GDAI01001661    JAI15942.1    GEBQ01010676    JAT29301.1    GECZ01027922    GECZ01023338    GECZ01020028    JAS41847.1    JAS46431.1    JAS49741.1    JXUM01099004    GAPW01004483    KQ564462    JAC09115.1    KXJ72236.1    GFDL01003087    JAV31958.1    KQ414755    KOC61742.1    GANO01000527    JAB59344.1    CH477235    EAT46674.1    EJY57406.1    LBMM01000221    KMR04267.1    CH902621    EDV44606.1    GFDG01000778    JAV18021.1    CVRI01000065    CRL05809.1    AJWK01010107    GFDF01003789    JAV10295.1    NNAY01000833    OXU26275.1    UFQT01001779    SSX31772.1    KP216760    AJC97117.1    ATLV01025079    KE525369    KFB52127.1    AXCP01007413    GGFJ01009463    MBW58604.1    AXCN02001450    APGK01042609    KB741007    KB632182    ENN75610.1    ERL89617.1    GGFM01007744    MBW28495.1    ADMH02001131    ETN64009.1    AAAB01008847    EAA06827.3    APCN01001073    GBHO01034991    GBRD01002698    GDHC01003916    JAG08613.1    JAG63123.1    JAQ14713.1    GGFK01009802    MBW43123.1    GALA01000853    JAA93999.1    AXCM01006226    CVRI01000013    CRK89607.1    GECL01002106    JAP04018.1    GBBI01000558    JAC18154.1    GBGD01003004    JAC85885.1    GDKW01000967    JAI55628.1    ACPB03004243    GAHY01000727    JAA76783.1    QCYY01002892    ROT66744.1    GDRN01091327    JAI60291.1    GALA01000797    JAA94055.1    GL732654    EFX68468.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000007151    UP000053268    UP000092443    + More
UP000078200    UP000092460    UP000092445    UP000092444    UP000091820    UP000037069    UP000192223    UP000053097    UP000279307    UP000007755    UP000078540    UP000078541    UP000005205    UP000075809    UP000007798    UP000076502    UP000008792    UP000078542    UP000000311    UP000009192    UP000002282    UP000001292    UP000008711    UP000000803    UP000027135    UP000268350    UP000235965    UP000007266    UP000053105    UP000005203    UP000095300    UP000001070    UP000095301    UP000242457    UP000092553    UP000001819    UP000192221    UP000008237    UP000069940    UP000249989    UP000053825    UP000008820    UP000036403    UP000007801    UP000069272    UP000183832    UP000092461    UP000002358    UP000215335    UP000075884    UP000030765    UP000075880    UP000075886    UP000019118    UP000030742    UP000000673    UP000076407    UP000075903    UP000075902    UP000075882    UP000007062    UP000075840    UP000075883    UP000015103    UP000283509    UP000000305   

PRIDE

Q0N2S2    O15971   

Pfam

PF00071   Ras        + More
PF06071   YchF-GTPase_C
PF01926   MMR_HSR1

Interpro

IPR027417   P-loop_NTPase        + More
IPR001806   Small_GTPase       
IPR005225   Small_GTP-bd_dom       
IPR012676   TGS-like       
IPR023192   TGS-like_dom_sf       
IPR013029   YchF_C       
IPR006073   GTP_binding_domain       
IPR041706   YchF_N       
IPR031167   G_OBG       
IPR012675   Beta-grasp_dom_sf       

SUPFAM

SSF52540   SSF52540        + More
SSF81271   SSF81271       

Gene 3D

1.10.150.300     3.10.20.30    

CDD

cd01900  YchF
cd04867  TGS_YchF_C

ProteinModelPortal

Q0N2S2   A0A2A4JZU3   A0A2H1W7T4   A0A194QPG3   A0A2W1BZL4   A0A212FLX1   + More
A0A194Q9J9   A0A1A9Y8M3   A0A1A9UHY9   A0A1B0C3V9   A0A1A9ZBC2   D3TNT5   A0A1A9W935   A0A0L0C293   A0A1W4XUG1   A0A026WQJ3   F4W459   A0A195B3F1   A0A195ETC1   A0A158NF30   A0A151X1W9   A0A1Y1N6E8   B4NCN8   A0A154PCA5   B4M9Y7   A0A195CLK5   E2AT08   B4L7W8   B4PY14   B4I654   B3NWH1   O15971   E9I9V7   A0A067R747   A0A3B0K0F3   A0A0C9RTU9   A0A2J7PJS8   D6WHE1   A0A310STY6   A0A0N0U6J3   A0A087ZVR2   A0A1I8QCX8   B4JKA5   A0A1I8NAV0   A0A2A3EAQ6   A0A0M5J8A4   A0A034WV28   W8AGQ9   B5DN66   A0A1W4VG45   E2B6P6   A0A0T6AXI3   A0A0K8UJI2   A0A0K8TNH4   A0A1B6M051   A0A1B6F8F5   A0A023EJH6   A0A1Q3FWN5   A0A0L7QSX5   U5EZM3   Q17J36   A0A0J7L967   B3MQI0   A0A182FIL5   A0A1L8EH58   A0A1J1J4L1   A0A1B0CFI1   A0A1L8DVH3   K7INY9   A0A232F6K3   A0A336MMZ4   A0A0B4UBW3   A0A182NAD2   A0A084WPI3   A0A182JBA7   A0A2M4C024   A0A182QHP3   N6U250   A0A2M3ZJ48   W5JMM4   A0A182X7G4   A0A182V6E8   A0A182U510   A0A182LDM8   Q7QEG1   A0A182I9X5   A0A0A9WQ73   A0A2M4AQS5   T1D4Q7   A0A182M537   A0A1J1HNH7   A0A0V0G7B7   A0A023FAU6   A0A069DPZ5   A0A0P4VUC0   R4G8M2   A0A3R7M456   A0A0P4W546   T1DF43   E9HIB2  

PDB

5SZJ     E-value=3.23323e-82,     Score=773

KEGG

778528    K07903 Ras-related protein Rab-10 | (RefSeq) Rab-10; small GTP-binding protein Rab10

PATHWAY

04144    Endocytosis - Bombyx mori (domestic silkworm)

GO

GO:0005525   GO:0003924   GO:0007295   GO:0110010   GO:0045175   GO:0110011   GO:0045178   GO:0016192   GO:0005737   GO:0031254   GO:0061864   GO:0016328   GO:0032482   GO:0045202   GO:0031982   GO:0055037   GO:0043025   GO:0032869   GO:0005768   GO:0072659   GO:0006886   GO:0017157   GO:0009306   GO:0005794   GO:0005886   GO:0006904   GO:0008021   GO:0032593   GO:0007264   GO:0005515   GO:0004888   GO:0043565   GO:0043401   GO:0006418   GO:0016020   GO:0005634   GO:0006260  

Length:

203

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.26234

Exp number, first 60 AAs:

0.24243

Total prob of N-in:

0.09249

outside

1  -  203

 

 

Pi

5.723842

Theta

15.216663

Tajima's D

-1.09805

CLR

17.731144

CSRT

0.115694215289236

Interpretation

Uncertain