SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO06924
Pre Gene Modal
BGIBMGA004663
Annotation
PREDICTED:_kelch-like_protein_2_[Amyelois_transitella]
Location in the cell
PlasmaMembrane   Reliability : 2.441
 

Sequence

CDS
ATGCCGCACATCCAACCCGAGACCTTCAGGCTCTTCATTCAATACGTTTACACTGGAAAGCTGCTTTTACAAGATTCAGGAGTGTTTGAAATGATGACGCTAGCAGCAGATCTTGGGGTAGAAGATTTGCGGTCTGCTTGCGAAGACCACGTCACTTCAACATTAAGCGTAGATAGTGCTTGTACTCTGTTGGCTGTTGCAATGGAAATACATGATAGACCAGGCGGAAAAAGTGCATCTTCGTTTATGGAGCGCTGCATCGCCTTCATTGGAGACAACGCGGCCGACTGTGTCAAGACCAACGCCTTCCTCAACCTGCCCAAGGAAGCTCTCATCAAGCTTATATCTTCGGATTTCCTGTGTCTTGAAGAGGAAGAAGTGTGGCGCTGTGCTCTCGCTTGGGCCAAGCAGCGCGCCGGCGTGACCCAACCCACGGCGCACTGGACGGAGGAGGAGAGGGCGCGGGTTTGCCACCACCTCGCACCCCTCATGCAACACATAAGACTGTTACTCATAGAGAGTTCAGTGTTCGCTGAGGAGGTGGAGCCGACGGGCGCGGTGCCCATGGAGGTCTCTCTGGAGCGGTACCGGCGCGCCGCGCTGCACGCCCAGCCCGACCACAACACGCAACCCAGGTTGGCTGTGAACATGTTCGCGGGCTCGGCGATCCTTCATCAGGATAAAAGCGCTTTTCAATCCGTCATTAACAACTGGTGTGGGACTCCAAAGCAGTCGTGGCGGCTTGTGTTCCGCGCCTCGACACACGGCTACTCCGCGCAGGCCTTCCACTCGCACTGCGATGGAATATCGCCCGTCTTACTTTTAGTGCAGTTGTCCCGCGGCGAGGTGGTGGGGGGGTACAGCAGCGCGGGGTGGGGGCCGGGCGGCGCGGGGGGCTACGTGTCGGCGGAGCGCGCCTTCCTGTTCGCGCTGTCGGAGCCCCCCGCGCGGCACCCGCTGCTCAAGAAGCCCTTCGCGCTCTGCTACCATCCCGACTGCGGTCCTATTTTCGGCGCCGGCGCGGATCTGTTCATCTCGAGTAACTGCAACACGAACTGTGACAGTTACAGCAACCTACACTCGTACGGGGATCCAATCGCGCCCGCCTCGCTCGCGTCAGAGTACAACTTTACCGTGTTAGACTACGAGATTTTCACTTATAAACATCAATAA
Protein
MPHIQPETFRLFIQYVYTGKLLLQDSGVFEMMTLAADLGVEDLRSACEDHVTSTLSVDSACTLLAVAMEIHDRPGGKSASSFMERCIAFIGDNAADCVKTNAFLNLPKEALIKLISSDFLCLEEEEVWRCALAWAKQRAGVTQPTAHWTEEERARVCHHLAPLMQHIRLLLIESSVFAEEVEPTGAVPMEVSLERYRRAALHAQPDHNTQPRLAVNMFAGSAILHQDKSAFQSVINNWCGTPKQSWRLVFRASTHGYSAQAFHSHCDGISPVLLLVQLSRGEVVGGYSSAGWGPGGAGGYVSAERAFLFALSEPPARHPLLKKPFALCYHPDCGPIFGAGADLFISSNCNTNCDSYSNLHSYGDPIAPASLASEYNFTVLDYEIFTYKHQ

Summary

EMBL
ODYU01012689    SOQ59130.1    NWSH01000674    PCG74882.1    BABH01039370    BABH01039371    + More
KZ149906    PZC78297.1    GDHF01025801    GDHF01007257    JAI26513.1    JAI45057.1    CH954177    EDV59271.1    CM000157    EDW87701.1    AE014134    AY051920    AAF52575.2    AAK93344.1    CH902624    EDV33069.1    GBHO01030033    JAG13571.1    GDHC01017171    JAQ01458.1    GBXI01003537    JAD10755.1    CM000361    CM002910    EDX04147.1    KMY88876.1    CH480818    EDW52049.1    KQ971320    EFA00193.1    CH479180    EDW29003.1    CH916368    EDW04000.1    CH940649    EDW64022.1    KRF81393.1    KRF81394.1    AGBW02007696    OWR54703.1    CH379060    EAL33778.1    OUUW01000004    SPP79172.1    NEVH01006580    PNF37627.1    KK853032    KDR12261.1    AAAB01008849    EAA07124.5    AXCN02001750    GBBI01002426    JAC16286.1    CH933807    EDW11244.2    ATLV01018866    KE525251    KFB43419.1    KQ459252    KPJ02187.1    ACPB03007967    GFXV01006466    MBW18271.1    AXCM01000294    KQ461185    KPJ07426.1    GGMR01004148    MBY16767.1    NNAY01000159    OXU30440.1    ABLF02040154    AAZX01002889    KQ414755    KOC61755.1    DS235149    EEB12516.1    KQ434870    KZC09542.1    CH477741    EAT36706.1    GBYB01003388    JAG73155.1    KQ977642    KYN00968.1    KQ976625    KYM79001.1    GL887491    EGI71044.1    CVRI01000040    CRK94933.1    QOIP01000012    RLU16196.1    KZ288350    PBC27357.1    KQ979609    KYN20136.1    KQ982585    KYQ54274.1    GL442439    EFN63432.1    GDRN01067928    GDRN01067925    JAI64289.1    APGK01043977    APGK01043978    APGK01043979    APGK01043980    KB741019    KB631645    ENN75155.1    ERL84980.1    QCYY01000555    ROT84365.1    KK107153    EZA56973.1    CP012523    ALC38966.1    ALC39472.1    GEGO01004895    JAR90509.1    GDRN01067924    JAI64293.1    GFAA01002792    JAU00643.1    APCN01005164    GDRN01067929    JAI64288.1    KQS70721.1    KRJ97318.1    JTDY01007026    KOB65514.1    GDRN01067927    JAI64290.1    KMY88877.1    UFQT01000021    SSX17936.1    ABJB010122231    ABJB010150017    ABJB010329568    ABJB010373711    ABJB010658350    ABJB010837073    ABJB010911255    DS854657    EEC13695.1    CH963852    EDW75626.2    AJVK01003145    JRES01001542    KNC22162.1    GGMS01013950    MBY83153.1    ADMH02001737    ETN61244.1    JXJN01007325    CCAG010023470    JH432016    GL446000    EFN88640.1    GL732527    EFX87674.1    ADTU01001478    ADTU01001479    ADTU01001480   
Pfam
PF07707   BACK        + More
PF07534   TLD
PF00651   BTB
PF01423   LSM
Interpro
IPR011705   BACK        + More
IPR006571   TLDc_dom       
IPR011333   SKP1/BTB/POZ_sf       
IPR000210   BTB/POZ_dom       
IPR001163   LSM_dom_euk/arc       
IPR010920   LSM_dom_sf       
IPR027078   snRNP-E       
SUPFAM
SSF54695   SSF54695        + More
SSF50182   SSF50182       
PDB
4HXI     E-value=5.34325e-07,     Score=128

Ontologies

Topology

Length:
390
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0308499999999999
Exp number, first 60 AAs:
0.02239
Total prob of N-in:
0.00729
outside
1  -  390
 
 

Population Genetic Test Statistics

Pi
20.540307
Theta
19.999223
Tajima's D
-1.004432
CLR
1.699036
CSRT
0.131393430328484
Interpretation
Uncertain
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