SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO06917  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA014474
Annotation
PREDICTED:_cytosolic_Fe-S_cluster_assembly_factor_NUBP1_homolog_[Papilio_machaon]
Full name
Cytosolic Fe-S cluster assembly factor NUBP1 homolog       + More
Cytosolic Fe-S cluster assembly factor NUBP1      
Cytosolic Fe-S cluster assembly factor nubp1      
Alternative Name
Nucleotide-binding protein 1
Location in the cell
Cytoplasmic   Reliability : 1.361 Extracellular   Reliability : 1.034
 

Sequence

CDS
ATGAGTCCTGATATAAACGTAGGTATACTCGATGCCGACATCTGCGGCCCGAGCCAGCCGCGAGTGTTGGGCGTCCGCGGAGAGCAGGTCCACAACTCCGGCTCGGGGTGGTCCCCTGTTTACGTTACGGATAACTTGTCGCTGATGTCGATCGGGTTCCTGTTGGGCAGTCCCGACGACGCCGTCATATGGAGGGGACCGAAGAAGAACGGTATGATCAAGCAGTTCCTGAGCGAAGTGGACTGGGGAGACTTGGACTACTTGCTCATAGATACGCCTCCCGGTACGTCGGACGAACACCTGTCCGCGGTGCAGTACCTGGCGCAGGCGCAGGTGTCGGGCGCGCTGCTGGTCACCACGCCGCAGGAACTCTCGCTGCTCGACGTTCGCAAAGAGATTGACTTCTGTCGCAAAGTCGGGCTCAGGGTGCTCGGGGTCGTCGAGAACATGTCGCTGTTCGTGTGCCCCAACTGCAAGAGTCGCAGCGAGATCTTCCCGGCGACGTCTGGCGGGGCGGCCGCCATGTGCCGCGAGCTGCGCGTGCCGCTGCTGGGCGCGCTGCCGCTCGAGCCGCGACTGGCGCGCGCCTGCGACTCCGGCGCGCTGCCGCTGTCCGCGCCCGCCGCCGCCGCGCCCGCCGCCAACACGCACGACGCGCTGCGAGAGATCCTCGACAAAATCGTAGCAGCCTGTGAGAACTCGAACTAA
Protein
MSPDINVGILDADICGPSQPRVLGVRGEQVHNSGSGWSPVYVTDNLSLMSIGFLLGSPDDAVIWRGPKKNGMIKQFLSEVDWGDLDYLLIDTPPGTSDEHLSAVQYLAQAQVSGALLVTTPQELSLLDVRKEIDFCRKVGLRVLGVVENMSLFVCPNCKSRSEIFPATSGGAAAMCRELRVPLLGALPLEPRLARACDSGALPLSAPAAAAPAANTHDALREILDKIVAACENSN

Summary

Description
Component of the cytosolic iron-sulfur (Fe/S) protein assembly (CIA) machinery. Required for maturation of extramitochondrial Fe-S proteins. The NUBP1-NUBP2 heterotetramer forms a Fe-S scaffold complex, mediating the de novo assembly of an Fe-S cluster and its transfer to target apoproteins.
Component of the cytosolic iron-sulfur (Fe/S) protein assembly (CIA) machinery. Required for maturation of extramitochondrial Fe-S proteins. The NUBP1-NUBP2 heterotetramer forms a Fe-S scaffold complex, mediating the de novo assembly of an Fe-S cluster and its transfer to target apoproteins. Implicated in the regulation of centrosome duplication.
Component of the cytosolic iron-sulfur (Fe/S) protein assembly (CIA) machinery. Required for maturation of extramitochondrial Fe-S proteins. The NUBP1-NUBP2 heterotetramer forms a Fe-S scaffold complex, mediating the de novo assembly of an Fe-S cluster and its transfer to target apoproteins (By similarity). Implicated in the regulation of centrosome duplication (PubMed:16638812, PubMed:23807208). Negatively regulates cilium formation and structure (PubMed:23807208).
Cofactor
[4Fe-4S] cluster
Subunit
Heterotetramer of 2 NUBP1 and 2 NUBP2 chains.
Heterotetramer of 2 NUBP1 and 2 NUBP2 chains. Interacts with KIFC1.
Heterotetramer of 2 NUBP1 and 2 NUBP2 chains (PubMed:16638812). Interacts with KIFC1 (PubMed:16638812). Interacts with NUBP2 (PubMed:16638812). Interacts with the BBS/CCT complex subunit CCT1 (PubMed:23807208).
Miscellaneous
NIH3T3 cells expressing reduced levels of Nubp1 show an increase in number of centrosomes per cell and an increase in the fraction of multinucleated cells.
Similarity
Belongs to the Mrp/NBP35 ATP-binding proteins family. NUBP1/NBP35 subfamily.
Keywords
4Fe-4S   ATP-binding   Complete proteome   Cytoplasm   Iron   Iron-sulfur   Metal-binding   Nucleotide-binding   Reference proteome   Acetylation   Cell projection   Cilium   Cytoskeleton   Nucleus   Phosphoprotein  
Feature
chain  Cytosolic Fe-S cluster assembly factor NUBP1 homolog
EMBL
BABH01042256    BABH01042257    KQ461185    KPJ07441.1    GAIX01003441    JAA89119.1    + More
NWSH01000092    PCG79654.1    ODYU01000452    SOQ35270.1    KQ459252    KPJ02175.1    KZ149906    PZC78285.1    AGBW02007696    OWR54713.1    GEZM01013421    JAV92576.1    KQ971318    EFA00451.1    GL448558    EFN84288.1    RSAL01000034    RVE51383.1    NEVH01006580    PNF37673.1    GL436894    EFN71396.1    GL764397    EFZ17748.1    GL888148    EGI66516.1    GBYB01015341    JAG85108.1    JXUM01033983    KQ561007    KXJ80063.1    KQ982636    KYQ53309.1    LBMM01001148    KMQ96824.1    JR040269    AEY59057.1    KK852999    KDR12672.1    NNAY01002918    OXU20310.1    PYGN01002997    PSN29762.1    CH477658    KN124499    KFO20982.1    AERX01035694    AERX01035695    JH172216    GEBF01005148    EHB13617.1    JAN98484.1    GGLE01005174    MBY09300.1    ATLV01020328    KE525298    KFB45091.1    GU196316    ACZ26272.1    AXCM01001644    AAKN02007515    GANO01001800    JAB58071.1    AHAT01013584    AGTP01047032    AMQN01004585    KB293867    ELU15310.1    AB984715    BAT46579.1    HADW01018592    HADX01003809    SBP19992.1    HAEF01003253    HAEG01000497    SBR40635.1    GL192934    EFB25174.1    HAEA01012581    SBQ41061.1    HADY01010735    HAEJ01012190    SBS52647.1    HADZ01005904    SBP69845.1    HAED01022201    HAEE01007148    SBR27168.1    GECU01034955    GECU01030666    GECU01027094    GECU01026824    GECU01024582    GECU01021566    GECU01019587    GECU01007020    GECU01002594    GECU01002361    JAS72751.1    JAS77040.1    JAS80612.1    JAS80882.1    JAS83124.1    JAS86140.1    JAS88119.1    JAT00687.1    JAT05113.1    JAT05346.1    RAZU01000238    RLQ63458.1    AEMK02000018    JH000052    EGV96311.1    AAGW02056958    AAGW02056959    HAEH01000191    HAEI01006838    SBR64390.1    IACM01181825    LAB45230.1    AF114170    AK020141    AK157212    BC055436    DS469540    GFJQ02004184    JAW02786.1    HAEB01002035    HAEC01012197    SBQ80414.1    GFDL01007864    JAV27181.1    ACTA01137194    ACTA01145193    UFQT01000836    SSX27525.1    UFQT01001491    SSX30798.1    SSX27524.1   
Pfam
PF10609   ParA
Interpro
IPR027417   P-loop_NTPase        + More
IPR019591   Mrp/NBP35_ATP-bd       
IPR000808   Mrp_CS       
IPR033756   YlxH/NBP35       
IPR028601   NUBP1/Nbp35       
IPR003593   AAA+_ATPase       
SUPFAM
SSF52540   SSF52540       
PDB
6G2G     E-value=3.72048e-53,     Score=524

Ontologies

Topology

Subcellular location
Cytoplasm  
Nucleus   Enriched in centrioles of microtubule asters during prophase, prometaphase and telophase stages of mitosis. Localized at centrioles and in the nucleus at interphase. Colocalizes with NUBP2 at prometaphase. Specifically localizes to the axenome of motile cilia as opposed to primary non-motile cilia. Localization is independent of NUBP2 and KIFC1.   With evidence from 5 publications.
Cell projection   Enriched in centrioles of microtubule asters during prophase, prometaphase and telophase stages of mitosis. Localized at centrioles and in the nucleus at interphase. Colocalizes with NUBP2 at prometaphase. Specifically localizes to the axenome of motile cilia as opposed to primary non-motile cilia. Localization is independent of NUBP2 and KIFC1.   With evidence from 5 publications.
Cytoskeleton   Enriched in centrioles of microtubule asters during prophase, prometaphase and telophase stages of mitosis. Localized at centrioles and in the nucleus at interphase. Colocalizes with NUBP2 at prometaphase. Specifically localizes to the axenome of motile cilia as opposed to primary non-motile cilia. Localization is independent of NUBP2 and KIFC1.   With evidence from 5 publications.
Cilium axoneme   Enriched in centrioles of microtubule asters during prophase, prometaphase and telophase stages of mitosis. Localized at centrioles and in the nucleus at interphase. Colocalizes with NUBP2 at prometaphase. Specifically localizes to the axenome of motile cilia as opposed to primary non-motile cilia. Localization is independent of NUBP2 and KIFC1.   With evidence from 5 publications.
Cilium basal body   Enriched in centrioles of microtubule asters during prophase, prometaphase and telophase stages of mitosis. Localized at centrioles and in the nucleus at interphase. Colocalizes with NUBP2 at prometaphase. Specifically localizes to the axenome of motile cilia as opposed to primary non-motile cilia. Localization is independent of NUBP2 and KIFC1.   With evidence from 5 publications.
Microtubule organizing center   Enriched in centrioles of microtubule asters during prophase, prometaphase and telophase stages of mitosis. Localized at centrioles and in the nucleus at interphase. Colocalizes with NUBP2 at prometaphase. Specifically localizes to the axenome of motile cilia as opposed to primary non-motile cilia. Localization is independent of NUBP2 and KIFC1.   With evidence from 5 publications.
Centrosome   Enriched in centrioles of microtubule asters during prophase, prometaphase and telophase stages of mitosis. Localized at centrioles and in the nucleus at interphase. Colocalizes with NUBP2 at prometaphase. Specifically localizes to the axenome of motile cilia as opposed to primary non-motile cilia. Localization is independent of NUBP2 and KIFC1.   With evidence from 5 publications.
Centriole   Enriched in centrioles of microtubule asters during prophase, prometaphase and telophase stages of mitosis. Localized at centrioles and in the nucleus at interphase. Colocalizes with NUBP2 at prometaphase. Specifically localizes to the axenome of motile cilia as opposed to primary non-motile cilia. Localization is independent of NUBP2 and KIFC1.   With evidence from 5 publications.
Length:
235
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0415
Exp number, first 60 AAs:
0.03451
Total prob of N-in:
0.01650
outside
1  -  235
 
 

Population Genetic Test Statistics

Pi
18.450131
Theta
17.169232
Tajima's D
0.570863
CLR
1.435295
CSRT
0.547072646367682
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
26280517 SDTIFPDR 100.00 7e-05
25044914 SEIEYYAIIAK 100.00 7e-05
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